mRNA_M-pyrifera_M_contig88340.20519.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig88340.20519.1
Unique NamemRNA_M-pyrifera_M_contig88340.20519.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig88340.20519.1 vs. uniprot
Match: A0A5A8DT51_CAFRO (Uncharacterized protein n=5 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DT51_CAFRO)

HSP 1 Score: 130 bits (326), Expect = 1.200e-31
Identity = 82/168 (48.81%), Postives = 106/168 (63.10%), Query Frame = 1 
Query:   10 HMEARLKEQRHQLDREVAEMQKAVEXXXXXXXXXXXXXXXXXXEADRGERVALHLEEELKVAREKRGEQLKELESAIAKQKHRRALVSDRERRRVTMASLPRGDLDEAGEERLKQLFLVRRIFGSMLARRLREDTRRLDRLDAAFRRVRVATGLSQAPAIVAKFRGRD 513
            HM ARLK+QR +LD  V  +Q+ +E                  E      +A  L  +L+  R +R  ++  +E+A+ +Q  RR    +RERRR+ +A LPRGDLDEAGE+RLKQLF+VRRI+ SMLARRLRED RR DRL AAF+R+R ATGL+    IVAKF  RD
Sbjct:   98 HMVARLKQQRGELDTGVENLQRDLELLRRQRSEARLSLQTTRTERKHALALAERLRAQLEADRAQREGKMAAMEAALVEQGERRRAFDERERRRLNIAHLPRGDLDEAGEDRLKQLFVVRRIYASMLARRLREDARRCDRLQAAFQRIRGATGLTDTKEIVAKFLDRD 265
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BLAST of mRNA_M-pyrifera_M_contig88340.20519.1 vs. uniprot
Match: A0A812ZZB6_9DINO (Hypothetical protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812ZZB6_9DINO)

HSP 1 Score: 94.7 bits (234), Expect = 2.530e-19
Identity = 70/179 (39.11%), Postives = 99/179 (55.31%), Query Frame = 1 
Query:    1 MYAHMEARLKEQRHQLDREVAEMQKAVEXXXXXXXXXXXXXXXXXXEADRGERVALHLEEELKVAREKRGEQLKELESAIAKQKHRRALVSDRERRRVTMASLPRGDLDEAGEERLKQLFLVRRIFGSMLARRLREDTRRLDRLDAAFRRVRVATGLSQAPAIVAKFRGRDRTRVQLLA 537
            MY  M  RLK ++  +D E+  M++                     EA R E +   L   L+ AR  R  +L E+++ ++ Q  +RA       +  T   L R DLDEA EER+K+LFLVR+++G+ML R+LRED RR D+L++AF+R+R ATGLS   AIV KF  R  T+  L A
Sbjct:  137 MYLFMIERLKNEKTDVDLELRAMKRQTAQLKRSLKEGGLHKQGSRNEAARAEALVEQLRARLEHARGARQRKLDEVDATMSAQAAQRAAFDGAALQAAT-GGLRRRDLDEAQEERMKELFLVRKVYGNMLLRKLREDQRRSDKLESAFQRIRAATGLSDVRAIVDKFLHRADTQASLNA 314
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BLAST of mRNA_M-pyrifera_M_contig88340.20519.1 vs. uniprot
Match: A0A482RAU5_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RAU5_9ARCH)

HSP 1 Score: 88.6 bits (218), Expect = 5.130e-18
Identity = 46/76 (60.53%), Postives = 60/76 (78.95%), Query Frame = 1 
Query:  316 GDLDEAGEERLKQLFLVRRIFGSMLARRLREDTRRLDRLDAAFRRVRVATGLSQAPAIVAKFRGRDRTRVQLLARL 543
            GDLDE GE+RLKQLFLVR+I+ +ML+RRLR+D RR DRL  AF+R+R ATGLS   AI++K+  RD T + L A++
Sbjct:    6 GDLDEEGEDRLKQLFLVRKIYNNMLSRRLRDDQRRTDRLALAFQRIRTATGLSDVDAIISKYEQRDATVLALQAQM 81
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig88340.20519.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A5A8DT51_CAFRO1.200e-3148.81Uncharacterized protein n=5 Tax=Cafeteria roenberg... [more]
A0A812ZZB6_9DINO2.530e-1939.11Hypothetical protein (Fragment) n=1 Tax=Symbiodini... [more]
A0A482RAU5_9ARCH5.130e-1860.53Uncharacterized protein (Fragment) n=1 Tax=archaeo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig88340contigM-pyrifera_M_contig88340:10..552 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size543
Cds size543
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816793.2037885-CDS-M-pyrifera_M_contig88340:9..5521622816793.2037885-CDS-M-pyrifera_M_contig88340:9..552Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88340 10..552 -
1692278181.6596084-CDS-M-pyrifera_M_contig88340:9..5521692278181.6596084-CDS-M-pyrifera_M_contig88340:9..552Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88340 10..552 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig88340.20519.1prot_M-pyrifera_M_contig88340.20519.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig88340 10..552 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig88340.20519.1

>prot_M-pyrifera_M_contig88340.20519.1 ID=prot_M-pyrifera_M_contig88340.20519.1|Name=mRNA_M-pyrifera_M_contig88340.20519.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=181bp
MYAHMEARLKEQRHQLDREVAEMQKAVEKSKKLVREGQREVTAGRAEADR
GERVALHLEEELKVAREKRGEQLKELESAIAKQKHRRALVSDRERRRVTM
ASLPRGDLDEAGEERLKQLFLVRRIFGSMLARRLREDTRRLDRLDAAFRR
VRVATGLSQAPAIVAKFRGRDRTRVQLLARL
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mRNA from alignment at M-pyrifera_M_contig88340:10..552-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig88340.20519.1 ID=mRNA_M-pyrifera_M_contig88340.20519.1|Name=mRNA_M-pyrifera_M_contig88340.20519.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=543bp|location=Sequence derived from alignment at M-pyrifera_M_contig88340:10..552- (Macrocystis pyrifera P11B4 male)
ATGTACGCGCACATGGAGGCGCGGCTGAAGGAGCAGCGGCACCAGCTGGA
CCGAGAAGTCGCCGAAATGCAGAAAGCGGTCGAAAAGTCCAAAAAACTCG
TGCGTGAAGGGCAGAGGGAAGTCACGGCAGGGCGCGCGGAGGCCGACAGA
GGGGAGAGGGTGGCGCTGCATCTGGAGGAGGAGCTGAAGGTGGCCAGGGA
GAAGCGCGGGGAGCAACTGAAGGAGTTGGAGAGCGCGATTGCCAAGCAAA
AGCACCGGAGGGCGCTTGTGAGCGATCGGGAGCGGCGCAGGGTGACGATG
GCGAGTTTACCGCGTGGGGATTTGGACGAGGCTGGAGAAGAGCGTTTGAA
GCAGCTTTTTTTGGTGCGTCGAATTTTCGGGTCGATGCTCGCGCGGCGAT
TGCGTGAAGATACCCGTCGTTTGGATCGCCTTGACGCTGCCTTTCGTCGT
GTTCGGGTCGCCACGGGTCTGTCCCAAGCCCCTGCGATTGTGGCAAAGTT
TCGGGGCAGAGATCGGACAAGGGTGCAATTGCTCGCTCGATTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig88340:10..552-

>mRNA_M-pyrifera_M_contig88340.20519.1 ID=mRNA_M-pyrifera_M_contig88340.20519.1|Name=mRNA_M-pyrifera_M_contig88340.20519.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1086bp|location=Sequence derived from alignment at M-pyrifera_M_contig88340:10..552- (Macrocystis pyrifera P11B4 male)
ATGTACGCGCACATGGAGGCGCGGCTGAAGGAGCAGCGGCACCAGCTGGA
CCGAGAAGTCGCCGAAATGCAGAAAGCGGTCGAAAAGTCCAAAAAACTCG
TGCGTGAAGGGCAGAGGGAAGTCACGGCAGGGCGCGCGGAGGCCGACAGA
GGGGAGAGGGTGGCGCTGCATCTGGAGGAGGAGCTGAAGGTGGCCAGGGA
GAAGCGCGGGGAGCAACTGAAGGAGTTGGAGAGCGCGATTGCCAAGCAAA
AGCACCGGAGGGCGCTTGTGAGCGATCGGGAGCGGCGCAGGGTGACGATG
GCGAGTTTACCGCGTGGGGATTTGGACGAGGCTGGAGAAGAGCGTTTGAA
GCAGCTTTTTTTGGTGCGTCGAATTTTCGGGTCGATGCTCGCGCGGCGAT
TGCGTGAAGATACCCGTCGTTTGGATCGCCTTGACGCTGCCTTTCGTCGT
GTTCGGGTCGCCACGGGTCTGTCCCAAGCCCCTGCGATTGTGGCAAAGTT
TCGGGGCAGAGATCGGACAAGGGTGCAATTGCTCGCTCGATTGATGTACG
CGCACATGGAGGCGCGGCTGAAGGAGCAGCGGCACCAGCTGGACCGAGAA
GTCGCCGAAATGCAGAAAGCGGTCGAAAAGTCCAAAAAACTCGTGCGTGA
AGGGCAGAGGGAAGTCACGGCAGGGCGCGCGGAGGCCGACAGAGGGGAGA
GGGTGGCGCTGCATCTGGAGGAGGAGCTGAAGGTGGCCAGGGAGAAGCGC
GGGGAGCAACTGAAGGAGTTGGAGAGCGCGATTGCCAAGCAAAAGCACCG
GAGGGCGCTTGTGAGCGATCGGGAGCGGCGCAGGGTGACGATGGCGAGTT
TACCGCGTGGGGATTTGGACGAGGCTGGAGAAGAGCGTTTGAAGCAGCTT
TTTTTGGTGCGTCGAATTTTCGGGTCGATGCTCGCGCGGCGATTGCGTGA
AGATACCCGTCGTTTGGATCGCCTTGACGCTGCCTTTCGTCGTGTTCGGG
TCGCCACGGGTCTGTCCCAAGCCCCTGCGATTGTGGCAAAGTTTCGGGGC
AGAGATCGGACAAGGGTGCAATTGCTCGCTCGATTG
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