mRNA_M-pyrifera_M_contig88339.20518.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig88339.20518.1
Unique NamemRNA_M-pyrifera_M_contig88339.20518.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig88339.20518.1 vs. uniprot
Match: A0A2H3JZ35_WOLCO (HET-R (Fragment) n=1 Tax=Wolfiporia cocos (strain MD-104) TaxID=742152 RepID=A0A2H3JZ35_WOLCO)

HSP 1 Score: 58.2 bits (139), Expect = 3.940e-7
Identity = 43/137 (31.39%), Postives = 71/137 (51.82%), Query Frame = 1
Query:   31 SILTCSRELRLWDAHSGELRWSHRHYEADPRNAIYSPDGQMIATAIGNRIVALIDPTSGEIIGELQSDKGRGTTLAFASDSRTLAVSTHKSNI-----ITLWDIQTRQ--ELCVLETNLKYLSSLAFSPDAKRLVAA 420
            SI   S   + WDA    LR    H  A   +  +SP+GQ IA+A G++ V + D  SG  +  ++  KGR T++A + DS+     ++   I     + +WD  T +  +L ++  +  Y+ S+A+SPD  R+V A
Sbjct:   11 SISLLSPRRQQWDAC---LRVIGDHANA-VNSVTFSPNGQWIASASGDKTVRMFDAVSGTTLNTMRGHKGRVTSVAVSPDSQFAVSGSYNGEINMEAMLHMWDPDTGECLQLAIVGEDT-YVYSVAYSPDGGRIVTA 142          
BLAST of mRNA_M-pyrifera_M_contig88339.20518.1 vs. uniprot
Match: A0A1Q7ZWK7_9CYAN (Uncharacterized protein n=1 Tax=Cyanobacteria bacterium 13_1_40CM_2_61_4 TaxID=1805101 RepID=A0A1Q7ZWK7_9CYAN)

HSP 1 Score: 56.2 bits (134), Expect = 2.570e-6
Identity = 42/160 (26.25%), Postives = 78/160 (48.75%), Query Frame = 1
Query:   13 FSPNAESILTC-SRELRLWDAHSGELRWSHRHYEADPRNAIYSPDGQMIATAIGNRIVALIDPTSGEIIGELQS----------------DKGRGTTLAFASDSRTLAVSTH-KSNIITLWDIQTRQELCVLETNLKYLSS--------LAFSPDAKRLV 414
            FSP++  ++T      ++WDA +G+L++S   ++AD  +A++SP+G+ +AT+  +  V L   T+G++I  L                  D      ++F+SD R L  +   +S+   LWD++T + L  L+   +              FSPD K ++
Sbjct:  130 FSPDSHLLVTLRGTTAKVWDAATGQLKYSLTGHQADIDSAVFSPNGERLATSSADGTVRLWSSTTGQLITMLAVWRVKKIPRWRVVSQFLDIPISIYVSFSSDGRRLLTAVEWESSPAKLWDVETGRLLATLDGPTERWGGGKGPAAVKAMFSPDGKLIL 289          
BLAST of mRNA_M-pyrifera_M_contig88339.20518.1 vs. uniprot
Match: A0A2Z3H048_9BACT (Uncharacterized protein n=1 Tax=Gemmata obscuriglobus TaxID=114 RepID=A0A2Z3H048_9BACT)

HSP 1 Score: 55.5 bits (132), Expect = 5.320e-6
Identity = 35/100 (35.00%), Postives = 53/100 (53.00%), Query Frame = 1
Query:  118 PRNAIYSPDGQMIATAIGNRIVALIDPTSGEIIGELQSDKGRGTTLAFASDSRTLAVSTHKSNIITLWDIQTRQELCVLETNLKYLSSLAFSPDAKRLVA 417
            P +  +SPDG+ +  A  +    L++  +GE +  L+ +    T   F+ D +T+A  T  +  + LWD  T  EL  L      LSS+AFSPD K+LVA
Sbjct:  103 PNSVAFSPDGRRVLIAGTDPEARLVEGDTGEAVFSLKLNDS--TRAVFSPDGKTIATGTAAA-AVQLWDAATGDELVKLPGATGRLSSVAFSPDGKKLVA 199          
BLAST of mRNA_M-pyrifera_M_contig88339.20518.1 vs. uniprot
Match: A0A225EEX0_9BACT (High-affnity carbon uptake protein Hat/HatR n=1 Tax=Fimbriiglobus ruber TaxID=1908690 RepID=A0A225EEX0_9BACT)

HSP 1 Score: 54.7 bits (130), Expect = 9.920e-6
Identity = 41/103 (39.81%), Postives = 56/103 (54.37%), Query Frame = 1
Query:  133 YSPDGQMIATAIGNRIVALIDPTSGEIIGELQSDKGRGTTLAFASDSRTLAVSTHK---SNIITLWDIQTR---QELCVLETNLKYLSSLAFSPDAKRLVAAG 423
            Y  DG ++A      +V LIDPT+GE IGEL     R T LAF S    LAV++ +   S +I L+D  T    + L  +  +   + +LAFSPD K L +AG
Sbjct:   31 YRTDGSLLAAGSRGTVV-LIDPTTGEAIGELTGQTQRVTALAF-SHGGLLAVASGEPGISGLIGLYDATTPTVGKPLASIAAHKDIIYALAFSPDGKTLASAG 131          
BLAST of mRNA_M-pyrifera_M_contig88339.20518.1 vs. uniprot
Match: A0A354GS47_9BACT (Uncharacterized protein n=1 Tax=Planctomycetales bacterium TaxID=2053591 RepID=A0A354GS47_9BACT)

HSP 1 Score: 53.9 bits (128), Expect = 1.830e-5
Identity = 40/116 (34.48%), Postives = 58/116 (50.00%), Query Frame = 1
Query:  124 NAIYSPDGQMIATAIGNRIVALIDPTSGEIIGELQSDKGRGT-TLAFASDSRTLAVS-----------THKSNIITLWDIQTRQELCVLET------NLKYLSSLAFSPDAKRLVA 417
            +A+YSPDG+++ATA  N  + L D  +G+ I   +S+K     +LAF+ D +TLA             T     +TLWD+ TR+     E       N +    LA+SPD K L A
Sbjct:  319 DAVYSPDGKILATAGDNGWIHLWDAATGKGIAAWESEKNTLLLSLAFSPDGKTLASGGMGFDLAKHEVTRLPTKLTLWDVATRKPRLSFENEHDQFGNQRDFRRLAYSPDGKWLAA 434          
BLAST of mRNA_M-pyrifera_M_contig88339.20518.1 vs. uniprot
Match: A0A2V8RUD7_9BACT (Uncharacterized protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8RUD7_9BACT)

HSP 1 Score: 53.1 bits (126), Expect = 3.440e-5
Identity = 41/134 (30.60%), Postives = 60/134 (44.78%), Query Frame = 1
Query:   52 ELRLWDAHSGELRWSHRHYEADPRNAIYSPDGQMIATAIGNRIVALIDPTSGEII---------GELQSDKGRGTTLAFASDSRTLAVSTHKSNIITLWDIQTRQELCVLETNLKYLSSLAFSPDAKRLVAAGQ 426
            +L+LWD  +   R           +   SPDG ++ATA+GN  V L D T+G  +          +   + G    L F+ D R LA ++     ITLWD QT + +  L+    +    AFSPD  RL    +
Sbjct:  314 QLKLWDFTAKTGRTLLTLPRGRAASFDLSPDGHLLATAVGNT-VKLWDTTTGSEVHTFDVPAPLAQFAPEVGVNA-LVFSPDGRLLATTSGMDGQITLWDTQTTRVVQRLKGGTNFAYDAAFSPDGTRLYTGAK 445          
BLAST of mRNA_M-pyrifera_M_contig88339.20518.1 vs. uniprot
Match: A0A1U7IC89_9NOSO (ANAPC4_WD40 domain-containing protein n=1 Tax=Nostoc calcicola FACHB-389 TaxID=1357508 RepID=A0A1U7IC89_9NOSO)

HSP 1 Score: 52.0 bits (123), Expect = 8.070e-5
Identity = 44/157 (28.03%), Postives = 73/157 (46.50%), Query Frame = 1
Query:    7 IAFSPNAESILT--CSRELRLWDAHSGE-LRWSHRHY------EADPRNAIYSPDGQMIATAIGNRIVALIDPTSGEIIGELQ----------SDKGRGTTLAFASDSRTLAVSTHKSNIITLWDIQTRQELCVLETNLKYLSSLAFSPDAKRLVAA 420
            I FSP+   + T     E  +WD  +   +R  H  Y        DP   ++SP+G+++A A   R + L   +SGE I  +           +    G TLAF +D    A S+ +   + LW+++T  E+C+LE     + SL F  + + LV++
Sbjct:  532 IIFSPDKRLLATRHSMSEFAIWDITTRRFIRTIHIDYCEGDTDPGDPDPVLFSPNGELLAIA-ATRNITLWQVSSGEKIHTIDRFYQGWQRCMAFSPNGQTLAFTADEVD-ASSSIRRGTLRLWNVETGNEICILEEPFYKIESLDFVGNGQVLVSS 686          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig88339.20518.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A2H3JZ35_WOLCO3.940e-731.39HET-R (Fragment) n=1 Tax=Wolfiporia cocos (strain ... [more]
A0A1Q7ZWK7_9CYAN2.570e-626.25Uncharacterized protein n=1 Tax=Cyanobacteria bact... [more]
A0A2Z3H048_9BACT5.320e-635.00Uncharacterized protein n=1 Tax=Gemmata obscuriglo... [more]
A0A225EEX0_9BACT9.920e-639.81High-affnity carbon uptake protein Hat/HatR n=1 Ta... [more]
A0A354GS47_9BACT1.830e-534.48Uncharacterized protein n=1 Tax=Planctomycetales b... [more]
A0A2V8RUD7_9BACT3.440e-530.60Uncharacterized protein n=1 Tax=Acidobacteria bact... [more]
A0A1U7IC89_9NOSO8.070e-528.03ANAPC4_WD40 domain-containing protein n=1 Tax=Nost... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig88339contigM-pyrifera_M_contig88339:147..611 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score65.9
Seed ortholog evalue2e-08
Seed eggNOG ortholog1210884.HG799464_gene10476
Hectar predicted targeting categoryother localisation
EggNOG free text desc.anaphase-promoting complex binding
EggNOG OGsCOG2319@1,COG2319@2
COG Functional cat.S
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size465
Cds size465
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816793.1654332-CDS-M-pyrifera_M_contig88339:146..6111622816793.1654332-CDS-M-pyrifera_M_contig88339:146..611Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88339 147..611 +
1692278181.64478-CDS-M-pyrifera_M_contig88339:146..6111692278181.64478-CDS-M-pyrifera_M_contig88339:146..611Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88339 147..611 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig88339.20518.1prot_M-pyrifera_M_contig88339.20518.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig88339 147..611 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig88339.20518.1

>prot_M-pyrifera_M_contig88339.20518.1 ID=prot_M-pyrifera_M_contig88339.20518.1|Name=mRNA_M-pyrifera_M_contig88339.20518.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=155bp
DWIAFSPNAESILTCSRELRLWDAHSGELRWSHRHYEADPRNAIYSPDGQ
MIATAIGNRIVALIDPTSGEIIGELQSDKGRGTTLAFASDSRTLAVSTHK
SNIITLWDIQTRQELCVLETNLKYLSSLAFSPDAKRLVAAGQAFEDRQSP
YGTGQ
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mRNA from alignment at M-pyrifera_M_contig88339:147..611+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig88339.20518.1 ID=mRNA_M-pyrifera_M_contig88339.20518.1|Name=mRNA_M-pyrifera_M_contig88339.20518.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=465bp|location=Sequence derived from alignment at M-pyrifera_M_contig88339:147..611+ (Macrocystis pyrifera P11B4 male)
GATTGGATTGCCTTCTCGCCAAACGCAGAAAGTATTCTAACTTGTTCGCG AGAGCTTCGACTGTGGGATGCTCACTCTGGTGAGTTGCGGTGGAGCCATC GTCACTACGAAGCTGATCCCCGCAATGCAATCTATTCACCGGACGGTCAG ATGATTGCTACTGCGATCGGCAATCGAATTGTCGCTTTGATTGATCCAAC CAGCGGAGAGATCATCGGCGAATTACAGAGCGACAAGGGACGCGGAACCA CCTTGGCTTTTGCTTCAGACTCAAGAACGTTGGCCGTTAGTACACATAAA TCAAATATCATCACACTTTGGGATATCCAAACCCGCCAAGAACTGTGCGT ACTGGAAACCAATCTGAAGTATCTTTCTTCCCTGGCATTCTCCCCTGATG CTAAACGTCTCGTGGCCGCGGGGCAGGCGTTTGAAGATCGCCAATCGCCC TATGGAACAGGTCAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig88339:147..611+

>mRNA_M-pyrifera_M_contig88339.20518.1 ID=mRNA_M-pyrifera_M_contig88339.20518.1|Name=mRNA_M-pyrifera_M_contig88339.20518.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=930bp|location=Sequence derived from alignment at M-pyrifera_M_contig88339:147..611+ (Macrocystis pyrifera P11B4 male)
GATTGGATTGCCTTCTCGCCAAACGCAGAAAGTATTCTAACTTGTTCGCG
AGAGCTTCGACTGTGGGATGCTCACTCTGGTGAGTTGCGGTGGAGCCATC
GTCACTACGAAGCTGATCCCCGCAATGCAATCTATTCACCGGACGGTCAG
ATGATTGCTACTGCGATCGGCAATCGAATTGTCGCTTTGATTGATCCAAC
CAGCGGAGAGATCATCGGCGAATTACAGAGCGACAAGGGACGCGGAACCA
CCTTGGCTTTTGCTTCAGACTCAAGAACGTTGGCCGTTAGTACACATAAA
TCAAATATCATCACACTTTGGGATATCCAAACCCGCCAAGAACTGTGCGT
ACTGGAAACCAATCTGAAGTATCTTTCTTCCCTGGCATTCTCCCCTGATG
CTAAACGTCTCGTGGCCGCGGGGCAGGCGTTTGAAGATCGCCAATCGCCC
TATGGAACAGGTCAGGATTGGATTGCCTTCTCGCCAAACGCAGAAAGTAT
TCTAACTTGTTCGCGAGAGCTTCGACTGTGGGATGCTCACTCTGGTGAGT
TGCGGTGGAGCCATCGTCACTACGAAGCTGATCCCCGCAATGCAATCTAT
TCACCGGACGGTCAGATGATTGCTACTGCGATCGGCAATCGAATTGTCGC
TTTGATTGATCCAACCAGCGGAGAGATCATCGGCGAATTACAGAGCGACA
AGGGACGCGGAACCACCTTGGCTTTTGCTTCAGACTCAAGAACGTTGGCC
GTTAGTACACATAAATCAAATATCATCACACTTTGGGATATCCAAACCCG
CCAAGAACTGTGCGTACTGGAAACCAATCTGAAGTATCTTTCTTCCCTGG
CATTCTCCCCTGATGCTAAACGTCTCGTGGCCGCGGGGCAGGCGTTTGAA
GATCGCCAATCGCCCTATGGAACAGGTCAG
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