mRNA_M-pyrifera_M_contig88337.20517.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig88337.20517.1
Unique NamemRNA_M-pyrifera_M_contig88337.20517.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig88337.20517.1 vs. uniprot
Match: UPI0010366706 (DNA repair protein UVH3-like isoform X2 n=1 Tax=Camellia sinensis TaxID=4442 RepID=UPI0010366706)

HSP 1 Score: 152 bits (383), Expect = 1.570e-44
Identity = 67/114 (58.77%), Postives = 93/114 (81.58%), Query Frame = 1 
Query:    1 MGVHGLWKLLSPTGRRILIETLSGKKLAVDASIWLTQFVKAMRDEEGNSLPSAHLVGTLRRVCKLLFHRIRPIFVFDGGAPVLKRRTILKRQQARATKETLLRRAAQKLLLHQL 342
            MGVHGLW+LL+P GRR+ +ETL+GKKLA+DASIW+ QF+KAMRD++G  + +AH++G  RR+CKLLF R +P+FVFDGG P LKRRT++ R++ R   +  +R+ A+KLLL+ L
Sbjct:    1 MGVHGLWELLAPVGRRVSVETLAGKKLAIDASIWMIQFMKAMRDDKGEMVKNAHILGFFRRICKLLFLRTKPVFVFDGGTPALKRRTVIARRRQRENAQAKIRKTAEKLLLNHL 114
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BLAST of mRNA_M-pyrifera_M_contig88337.20517.1 vs. uniprot
Match: A0A7C9D3X5_OPUST (Crossover junction endodeoxyribonuclease n=2 Tax=Pentapetalae TaxID=1437201 RepID=A0A7C9D3X5_OPUST)

HSP 1 Score: 150 bits (379), Expect = 1.860e-44
Identity = 66/116 (56.90%), Postives = 93/116 (80.17%), Query Frame = 1 
Query:    1 MGVHGLWKLLSPTGRRILIETLSGKKLAVDASIWLTQFVKAMRDEEGNSLPSAHLVGTLRRVCKLLFHRIRPIFVFDGGAPVLKRRTILKRQQARATKETLLRRAAQKLLLHQLAL 348
            MGVHGLW LL+P GRR+ +ETL+GK+LA+DASIW+ QF+KAMRDE+G  + +AHL+G  RR+CKLLF R +P+FVFDGG P LKRRT++ R++ R   +  +R+ A+KLL++ + +
Sbjct:    1 MGVHGLWDLLAPVGRRVSVETLAGKRLAIDASIWMVQFMKAMRDEKGEVVRNAHLLGFFRRICKLLFLRTKPVFVFDGGTPALKRRTVIARRRQRENAQAKIRKTAEKLLMNHVGI 116
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BLAST of mRNA_M-pyrifera_M_contig88337.20517.1 vs. uniprot
Match: A0A059LFD6_9CHLO (XPG N-terminal domain-containing protein (Fragment) n=1 Tax=Helicosporidium sp. ATCC 50920 TaxID=1291522 RepID=A0A059LFD6_9CHLO)

HSP 1 Score: 153 bits (386), Expect = 4.270e-44
Identity = 71/114 (62.28%), Postives = 91/114 (79.82%), Query Frame = 1 
Query:    1 MGVHGLWKLLSPTGRRILIETLSGKKLAVDASIWLTQFVKAMRDEEGNSLPSAHLVGTLRRVCKLLFHRIRPIFVFDGGAPVLKRRTILKRQQARATKETLLRRAAQKLLLHQL 342
            MGVH LW LL P GRR+ IE L+GK+LA+DAS+W+ QF+KAMRDE G  L +AHL+G  RR+CKLLFHR+RPIFVFDG +P LKR+TI  R++ R  +E+  R+AA++LLL QL
Sbjct:    1 MGVHKLWDLLEPCGRRVNIEALTGKRLAIDASVWVYQFIKAMRDERGEMLRNAHLIGFFRRICKLLFHRVRPIFVFDGASPALKRQTIAARRRQREAQESRFRKAAERLLLSQL 114
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BLAST of mRNA_M-pyrifera_M_contig88337.20517.1 vs. uniprot
Match: A0A7R9YE64_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YE64_9STRA)

HSP 1 Score: 157 bits (396), Expect = 4.520e-44
Identity = 79/127 (62.20%), Postives = 95/127 (74.80%), Query Frame = 1 
Query:    1 MGVHGLWKLLSPTGRRILIETLSGKKLAVDASIWLTQFVKAMRDEEGNSLPSAHLVGTLRRVCKLLFHRIRPIFVFDGGAPVLKRRTILKRQQARATKETLLRRAAQKLLLHQL--ALQNGSTTKKP 375
            MGVHGLW+LL P GRR  IE+L GK LA+D SIWLTQFVKAMRD++G  L +AHL+GTLRR+CKLLFHRIRP+ VFDG AP LKRRT+ KR+  R  +E  + + AQ+LLL QL  A +     K P
Sbjct:    1 MGVHGLWRLLLPVGRRASIESLGGKTLAIDMSIWLTQFVKAMRDDDGRLLKNAHLLGTLRRLCKLLFHRIRPVMVFDGSAPTLKRRTLEKRRAMRERQEASVTKTAQRLLLAQLRKAREEAKAPKAP 127
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BLAST of mRNA_M-pyrifera_M_contig88337.20517.1 vs. uniprot
Match: A0A4S4CV51_CAMSI (XPGN domain-containing protein n=2 Tax=Camellia sinensis TaxID=4442 RepID=A0A4S4CV51_CAMSI)

HSP 1 Score: 152 bits (383), Expect = 8.650e-44
Identity = 67/114 (58.77%), Postives = 93/114 (81.58%), Query Frame = 1 
Query:    1 MGVHGLWKLLSPTGRRILIETLSGKKLAVDASIWLTQFVKAMRDEEGNSLPSAHLVGTLRRVCKLLFHRIRPIFVFDGGAPVLKRRTILKRQQARATKETLLRRAAQKLLLHQL 342
            MGVHGLW+LL+P GRR+ +ETL+GKKLA+DASIW+ QF+KAMRD++G  + +AH++G  RR+CKLLF R +P+FVFDGG P LKRRT++ R++ R   +  +R+ A+KLLL+ L
Sbjct:    1 MGVHGLWELLAPVGRRVSVETLAGKKLAIDASIWMIQFMKAMRDDKGEMVKNAHILGFFRRICKLLFLRTKPVFVFDGGTPALKRRTVIARRRQRENAQAKIRKTAEKLLLNHL 114
[Close]
BLAST of mRNA_M-pyrifera_M_contig88337.20517.1 vs. uniprot
Match: D8QQY4_SELML (XPGN domain-containing protein n=1 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8QQY4_SELML)

HSP 1 Score: 147 bits (370), Expect = 2.830e-43
Identity = 65/112 (58.04%), Postives = 90/112 (80.36%), Query Frame = 1 
Query:    1 MGVHGLWKLLSPTGRRILIETLSGKKLAVDASIWLTQFVKAMRDEEGNSLPSAHLVGTLRRVCKLLFHRIRPIFVFDGGAPVLKRRTILKRQQARATKETLLRRAAQKLLLH 336
            MGVHGLW+LL+P GRR+ +E L  KKLA+DASIW+ QF+KAMRD+ G  + +AHL+G  RR+CKLLF R++P+FVFDGG P LKRRT++ R++ R   ++ +R+ A+KLLL+
Sbjct:    1 MGVHGLWELLAPVGRRVSVELLGNKKLAIDASIWIIQFLKAMRDDRGEVMRNAHLLGFFRRICKLLFLRVKPVFVFDGGTPFLKRRTVIARRRQREQAQSKIRKTAEKLLLN 112
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BLAST of mRNA_M-pyrifera_M_contig88337.20517.1 vs. uniprot
Match: A0A803MVL2_CHEQI (XPGN domain-containing protein n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803MVL2_CHEQI)

HSP 1 Score: 149 bits (376), Expect = 8.340e-43
Identity = 66/112 (58.93%), Postives = 90/112 (80.36%), Query Frame = 1 
Query:    1 MGVHGLWKLLSPTGRRILIETLSGKKLAVDASIWLTQFVKAMRDEEGNSLPSAHLVGTLRRVCKLLFHRIRPIFVFDGGAPVLKRRTILKRQQARATKETLLRRAAQKLLLH 336
            MGVHGLW LL+P GRR+ +ETL+GK+LA+DASIW+ QF+KAMRDE G  + +AH++G  RR+CKLLF R +P+FVFDGG P LKRRT++ R++ R   +  +R+ A+KLLL+
Sbjct:    1 MGVHGLWDLLAPVGRRVSVETLTGKRLAIDASIWMIQFMKAMRDERGEMVRNAHILGFFRRICKLLFLRTKPVFVFDGGTPALKRRTVIARRRQRENAQAKIRKTAEKLLLN 112
[Close]
BLAST of mRNA_M-pyrifera_M_contig88337.20517.1 vs. uniprot
Match: A0A1J3HWR9_NOCCA (DNA repair protein UVH3 (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3HWR9_NOCCA)

HSP 1 Score: 154 bits (389), Expect = 5.120e-42
Identity = 68/114 (59.65%), Postives = 95/114 (83.33%), Query Frame = 1 
Query:    1 MGVHGLWKLLSPTGRRILIETLSGKKLAVDASIWLTQFVKAMRDEEGNSLPSAHLVGTLRRVCKLLFHRIRPIFVFDGGAPVLKRRTILKRQQARATKETLLRRAAQKLLLHQL 342
            MGV GLW+LL+P GRR+ +ETLSGK+LA+DASIW+ QF+KAMRDE+G+ + +AHL+G  RR+CKLLF R +P+FVFDGG P LKRRT++ R++ R   +T +R+ A+KLLL+++
Sbjct:    1 MGVQGLWELLAPVGRRVSVETLSGKRLAIDASIWMVQFIKAMRDEKGDMVQNAHLIGFFRRICKLLFLRTKPVFVFDGGTPALKRRTVIARRRQRENAQTKIRKTAEKLLLNRV 114
[Close]
BLAST of mRNA_M-pyrifera_M_contig88337.20517.1 vs. uniprot
Match: A0A6N2MXE2_SALVM (XPGN domain-containing protein n=2 Tax=Salix viminalis TaxID=40686 RepID=A0A6N2MXE2_SALVM)

HSP 1 Score: 147 bits (371), Expect = 8.270e-42
Identity = 67/114 (58.77%), Postives = 90/114 (78.95%), Query Frame = 1 
Query:    1 MGVHGLWKLLSPTGRRILIETLSGKKLAVDASIWLTQFVKAMRDEEGNSLPSAHLVGTLRRVCKLLFHRIRPIFVFDGGAPVLKRRTILKRQQARATKETLLRRAAQKLLLHQL 342
            MGV GLW LL+P GRR+ +ETL+GKKLA+DASIWL QF+KAMRD++G  + +AHL+G  RR+CKLL+ R +P+FVFDG  P LKRRT++ R++ R      +R+ A+KLLL+QL
Sbjct:    1 MGVQGLWDLLAPVGRRVSVETLAGKKLAIDASIWLVQFMKAMRDDKGEMVRNAHLLGFFRRICKLLYLRTKPVFVFDGATPALKRRTVIARRRLRENARAKIRKTAEKLLLNQL 114
[Close]
BLAST of mRNA_M-pyrifera_M_contig88337.20517.1 vs. uniprot
Match: A0A7R9XXF3_MICPS (Hypothetical protein (Fragment) n=2 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7R9XXF3_MICPS)

HSP 1 Score: 146 bits (369), Expect = 8.750e-42
Identity = 68/112 (60.71%), Postives = 86/112 (76.79%), Query Frame = 1 
Query:    1 MGVHGLWKLLSPTGRRILIETLSGKKLAVDASIWLTQFVKAMRDEEGNSLPSAHLVGTLRRVCKLLFHRIRPIFVFDGGAPVLKRRTILKRQQARATKETLLRRAAQKLLLH 336
            MGV GLW LL P GRR+ +E L G+K+AVDASIWL QFVKAMRDE G+ LP+AHL+G  RR+C+LL+HRIRP+FVFDG  PVLK  T   R++ R   +  ++R A+KLLL+
Sbjct:   27 MGVKGLWTLLEPAGRRVNVEALQGRKVAVDASIWLVQFVKAMRDERGDMLPNAHLLGFFRRICRLLYHRIRPVFVFDGATPVLKYNTTRARRRVRDNDQARMKRTAEKLLLN 138
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig88337.20517.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00103667061.570e-4458.77DNA repair protein UVH3-like isoform X2 n=1 Tax=Ca... [more]
A0A7C9D3X5_OPUST1.860e-4456.90Crossover junction endodeoxyribonuclease n=2 Tax=P... [more]
A0A059LFD6_9CHLO4.270e-4462.28XPG N-terminal domain-containing protein (Fragment... [more]
A0A7R9YE64_9STRA4.520e-4462.20Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A4S4CV51_CAMSI8.650e-4458.77XPGN domain-containing protein n=2 Tax=Camellia si... [more]
D8QQY4_SELML2.830e-4358.04XPGN domain-containing protein n=1 Tax=Selaginella... [more]
A0A803MVL2_CHEQI8.340e-4358.93XPGN domain-containing protein n=1 Tax=Chenopodium... [more]
A0A1J3HWR9_NOCCA5.120e-4259.65DNA repair protein UVH3 (Fragment) n=1 Tax=Noccaea... [more]
A0A6N2MXE2_SALVM8.270e-4258.77XPGN domain-containing protein n=2 Tax=Salix vimin... [more]
A0A7R9XXF3_MICPS8.750e-4260.71Hypothetical protein (Fragment) n=2 Tax=Micromonas... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig88337contigM-pyrifera_M_contig88337:153..681 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score155.2
Seed ortholog evalue2.1e-35
Seed eggNOG ortholog3712.Bo7g091090.1
KEGG koko:K10846
KEGG Pathwayko03420,map03420
Hectar predicted targeting categoryother localisation
GOsGO:0006139,GO:0006259,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009266,GO:0009408,GO:0009628,GO:0009987,GO:0010213,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:1901360
EggNOG free text desc.Xeroderma pigmentosum G N-region
EggNOG OGs37HP5@33090,3GA2V@35493,3HQM8@3699,COG0258@1,KOG2520@2759
COG Functional cat.L
Best tax levelBrassicales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03400
Exons2
Model size390
Cds size390
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816793.1035092-CDS-M-pyrifera_M_contig88337:152..4671622816793.1035092-CDS-M-pyrifera_M_contig88337:152..467Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88337 153..467 -
1692278181.616689-CDS-M-pyrifera_M_contig88337:152..4671692278181.616689-CDS-M-pyrifera_M_contig88337:152..467Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88337 153..467 -
1622816793.1200135-CDS-M-pyrifera_M_contig88337:606..6811622816793.1200135-CDS-M-pyrifera_M_contig88337:606..681Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88337 607..681 -
1692278181.6289234-CDS-M-pyrifera_M_contig88337:606..6811692278181.6289234-CDS-M-pyrifera_M_contig88337:606..681Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88337 607..681 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig88337.20517.1prot_M-pyrifera_M_contig88337.20517.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig88337 153..681 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig88337.20517.1

>prot_M-pyrifera_M_contig88337.20517.1 ID=prot_M-pyrifera_M_contig88337.20517.1|Name=mRNA_M-pyrifera_M_contig88337.20517.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=130bp
MGVHGLWKLLSPTGRRILIETLSGKKLAVDASIWLTQFVKAMRDEEGNSL
PSAHLVGTLRRVCKLLFHRIRPIFVFDGGAPVLKRRTILKRQQARATKET
LLRRAAQKLLLHQLALQNGSTTKKPIPPHP
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mRNA from alignment at M-pyrifera_M_contig88337:153..681-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig88337.20517.1 ID=mRNA_M-pyrifera_M_contig88337.20517.1|Name=mRNA_M-pyrifera_M_contig88337.20517.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=529bp|location=Sequence derived from alignment at M-pyrifera_M_contig88337:153..681- (Macrocystis pyrifera P11B4 male)
ATGGGGGTTCATGGCCTCTGGAAGCTGCTCTCCCCGACGGGGCGGCGTAT
TCTCATCGAAACACTGAGTGGAAAGGTAAGATGTAGAGGAGAAAGGGGGG
ATGTGGGATGATGAAGAGTATTGTGGGGGTCTTTGGGGGATAGTGGTGGG
GAGGAGGGGTGGGGTGAGGGGAACAAGGTGTAGATGGTGCTATGAGGGGT
GTTGGTTTGTGCAGAAGTTGGCTGTGGATGCGAGTATTTGGCTGACTCAG
TTTGTAAAGGCGATGCGTGACGAAGAGGGCAATTCTCTGCCATCTGCACA
CCTGGTGGGTACACTACGTCGAGTTTGCAAGCTGTTGTTTCATCGCATTC
GCCCTATCTTTGTCTTTGACGGCGGTGCTCCCGTGTTGAAGCGCCGAACT
ATCCTGAAACGCCAACAAGCACGTGCTACGAAGGAAACTTTGCTACGTCG
TGCAGCTCAAAAGCTTCTATTACACCAATTGGCGTTACAAAATGGCTCTA
CCACCAAGAAACCCATCCCCCCCCATCCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig88337:153..681-

>mRNA_M-pyrifera_M_contig88337.20517.1 ID=mRNA_M-pyrifera_M_contig88337.20517.1|Name=mRNA_M-pyrifera_M_contig88337.20517.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=780bp|location=Sequence derived from alignment at M-pyrifera_M_contig88337:153..681- (Macrocystis pyrifera P11B4 male)
ATGGGGGTTCATGGCCTCTGGAAGCTGCTCTCCCCGACGGGGCGGCGTAT
TCTCATCGAAACACTGAGTGGAAAGATGGGGGTTCATGGCCTCTGGAAGC
TGCTCTCCCCGACGGGGCGGCGTATTCTCATCGAAACACTGAGTGGAAAG
AAGTTGGCTGTGGATGCGAGTATTTGGCTGACTCAGTTTGTAAAGGCGAT
GCGTGACGAAGAGGGCAATTCTCTGCCATCTGCACACCTGGTGGGTACAC
TACGTCGAGTTTGCAAGCTGTTGTTTCATCGCATTCGCCCTATCTTTGTC
TTTGACGGCGGTGCTCCCGTGTTGAAGCGCCGAACTATCCTGAAACGCCA
ACAAGCACGTGCTACGAAGGAAACTTTGCTACGTCGTGCAGCTCAAAAGC
TTCTATTACACCAATTGGCGTTACAAAATGGCTCTACCACCAAGAAACCC
ATCCCCCCCCATCCAAAGTTGGCTGTGGATGCGAGTATTTGGCTGACTCA
GTTTGTAAAGGCGATGCGTGACGAAGAGGGCAATTCTCTGCCATCTGCAC
ACCTGGTGGGTACACTACGTCGAGTTTGCAAGCTGTTGTTTCATCGCATT
CGCCCTATCTTTGTCTTTGACGGCGGTGCTCCCGTGTTGAAGCGCCGAAC
TATCCTGAAACGCCAACAAGCACGTGCTACGAAGGAAACTTTGCTACGTC
GTGCAGCTCAAAAGCTTCTATTACACCAATTGGCGTTACAAAATGGCTCT
ACCACCAAGAAACCCATCCCCCCCCATCCA
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