mRNA_M-pyrifera_M_contig88336.20516.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig88336.20516.1
Unique NamemRNA_M-pyrifera_M_contig88336.20516.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig88336.20516.1 vs. uniprot
Match: UPI00199BF6D5 (Uncharacterized protein n=1 Tax=Candidatus Saccharimonas sp. TaxID=1917697 RepID=UPI00199BF6D5)

HSP 1 Score: 67.0 bits (162), Expect = 1.600e-10
Identity = 42/110 (38.18%), Postives = 57/110 (51.82%), Query Frame = 1 
Query:   16 SKLELDGTAHEDWIDLKASLTVHLVVADRWVYVPMRFDQASLLDYKHSGSGDIASPADSQRP-RGLSWLLRGAGNHQLQMTLRVPLRKTPTGDLLQLELPEMRYFTGKLT 342
            S +EL G A ++   L   L V L   + WV VP++ +QA +L   H  +GD     D + P RG  W  RGAG HQL +++ VP+R+      LQL LP       KLT
Sbjct:  124 SSIELTGDADDERATLNVRLVVRLRQPNEWVQVPLQLNQA-VLTKPHKYTGDGQEIPDRKDPDRGHVWWFRGAGPHQLDLSMSVPIRRQLPSRRLQLSLPASPVAKLKLT 232
[Close]
BLAST of mRNA_M-pyrifera_M_contig88336.20516.1 vs. uniprot
Match: A0A3L7UBW1_9BACT (Phage holin family protein n=2 Tax=Planctomycetes TaxID=203682 RepID=A0A3L7UBW1_9BACT)

HSP 1 Score: 57.4 bits (137), Expect = 3.790e-7
Identity = 41/121 (33.88%), Postives = 62/121 (51.24%), Query Frame = 1 
Query:    1 PDFFFSKLELDGTA--HEDWIDLKASLTVHLVVADRWVYVPMRFDQASLLDY-KHSGSGDIASPADSQRPRGLSWLLRGAGNHQLQMTLRVPLRKTPTGDLLQLELPEMRYFTGKLTLRLP 354
            P F  S +  +G+A  +ED + L A+L++ +      V VP+R ++A+LL   +H G  +        R  G    LRG G H+L+M+L VP+R+      L L LPE      KL + LP
Sbjct:  117 PPFSVSGVSFEGSAEANEDTVTLDATLSISVNRDGEDVLVPLRLNEATLLKKPEHLGPNEAEFDV-FDREEGYRCWLRGKGQHELKMSLAVPVRRQVAARRLMLRLPETPKSAIKLNVPLP 236
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig88336.20516.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
UPI00199BF6D51.600e-1038.18Uncharacterized protein n=1 Tax=Candidatus Sacchar... [more]
A0A3L7UBW1_9BACT3.790e-733.88Phage holin family protein n=2 Tax=Planctomycetes ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig88336contigM-pyrifera_M_contig88336:27..380 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score71.6
Seed ortholog evalue2.7e-10
Seed eggNOG ortholog1123242.JH636435_gene2349
Hectar predicted targeting categoryother localisation
EggNOG OGs2E0MW@1,2J0AX@203682,32W72@2
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size354
Cds size354
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816793.0659423-CDS-M-pyrifera_M_contig88336:26..3801622816793.0659423-CDS-M-pyrifera_M_contig88336:26..380Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88336 27..380 -
1692278181.603986-CDS-M-pyrifera_M_contig88336:26..3801692278181.603986-CDS-M-pyrifera_M_contig88336:26..380Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88336 27..380 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig88336.20516.1prot_M-pyrifera_M_contig88336.20516.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig88336 27..380 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig88336.20516.1

>prot_M-pyrifera_M_contig88336.20516.1 ID=prot_M-pyrifera_M_contig88336.20516.1|Name=mRNA_M-pyrifera_M_contig88336.20516.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=118bp
PDFFFSKLELDGTAHEDWIDLKASLTVHLVVADRWVYVPMRFDQASLLDY
KHSGSGDIASPADSQRPRGLSWLLRGAGNHQLQMTLRVPLRKTPTGDLLQ
LELPEMRYFTGKLTLRLP
back to top

mRNA from alignment at M-pyrifera_M_contig88336:27..380-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig88336.20516.1 ID=mRNA_M-pyrifera_M_contig88336.20516.1|Name=mRNA_M-pyrifera_M_contig88336.20516.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=354bp|location=Sequence derived from alignment at M-pyrifera_M_contig88336:27..380- (Macrocystis pyrifera P11B4 male)
CCGGACTTCTTCTTCTCCAAGCTGGAATTGGATGGAACTGCCCATGAAGA
CTGGATCGATCTTAAAGCTTCATTGACAGTTCATCTGGTCGTGGCTGACC
GCTGGGTGTATGTCCCCATGCGGTTCGATCAGGCATCACTGCTGGACTAC
AAGCACTCAGGATCCGGCGACATTGCGTCTCCGGCAGACAGTCAACGACC
GCGTGGTTTGTCTTGGCTTCTGCGAGGGGCGGGCAATCATCAATTGCAGA
TGACTCTTCGTGTCCCTTTGCGGAAGACCCCGACTGGGGATCTCCTGCAG
CTGGAACTACCAGAGATGAGGTACTTCACGGGTAAGTTGACTCTGCGACT
GCCG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig88336:27..380-

>mRNA_M-pyrifera_M_contig88336.20516.1 ID=mRNA_M-pyrifera_M_contig88336.20516.1|Name=mRNA_M-pyrifera_M_contig88336.20516.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=708bp|location=Sequence derived from alignment at M-pyrifera_M_contig88336:27..380- (Macrocystis pyrifera P11B4 male)
CCGGACTTCTTCTTCTCCAAGCTGGAATTGGATGGAACTGCCCATGAAGA
CTGGATCGATCTTAAAGCTTCATTGACAGTTCATCTGGTCGTGGCTGACC
GCTGGGTGTATGTCCCCATGCGGTTCGATCAGGCATCACTGCTGGACTAC
AAGCACTCAGGATCCGGCGACATTGCGTCTCCGGCAGACAGTCAACGACC
GCGTGGTTTGTCTTGGCTTCTGCGAGGGGCGGGCAATCATCAATTGCAGA
TGACTCTTCGTGTCCCTTTGCGGAAGACCCCGACTGGGGATCTCCTGCAG
CTGGAACTACCAGAGATGAGGTACTTCACGGGTAAGTTGACTCTGCGACT
GCCGCCGGACTTCTTCTTCTCCAAGCTGGAATTGGATGGAACTGCCCATG
AAGACTGGATCGATCTTAAAGCTTCATTGACAGTTCATCTGGTCGTGGCT
GACCGCTGGGTGTATGTCCCCATGCGGTTCGATCAGGCATCACTGCTGGA
CTACAAGCACTCAGGATCCGGCGACATTGCGTCTCCGGCAGACAGTCAAC
GACCGCGTGGTTTGTCTTGGCTTCTGCGAGGGGCGGGCAATCATCAATTG
CAGATGACTCTTCGTGTCCCTTTGCGGAAGACCCCGACTGGGGATCTCCT
GCAGCTGGAACTACCAGAGATGAGGTACTTCACGGGTAAGTTGACTCTGC
GACTGCCG
back to top