mRNA_M-pyrifera_M_contig88328.20513.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig88328.20513.1
Unique NamemRNA_M-pyrifera_M_contig88328.20513.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig88328.20513.1 vs. uniprot
Match: A0A7S4HHB6_9EUKA (UV excision repair protein RAD23 n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4HHB6_9EUKA)

HSP 1 Score: 81.3 bits (199), Expect = 4.510e-16
Identity = 40/78 (51.28%), Postives = 56/78 (71.79%), Query Frame = 1
Query:    1 MKLTLKTLSQEELHLEIDASASVLEAKQAIEKKFGHAVEQQKLIFAGRILQDDNTIASYDIPETGFLVLLVRKVSCPA 234
            MK+T+KTL QE+L +E + S  + E K+ I++K+ H  E Q+LIFAG+IL D  TI SY I E  FLV++V+KV+ PA
Sbjct:   10 MKITIKTLKQEQLTVEAEPSCKISELKEKIQEKYSHPSEAQRLIFAGKILDDAQTIESYKIQEKDFLVMMVKKVATPA 87          
BLAST of mRNA_M-pyrifera_M_contig88328.20513.1 vs. uniprot
Match: A0A8H7Q915_9FUNG (UV excision repair protein RAD23 n=1 Tax=Umbelopsis vinacea TaxID=44442 RepID=A0A8H7Q915_9FUNG)

HSP 1 Score: 80.9 bits (198), Expect = 5.140e-16
Identity = 40/73 (54.79%), Postives = 55/73 (75.34%), Query Frame = 1
Query:    1 MKLTLKTLSQEELHLEIDASASVLEAKQAIEKKFGHAVEQQKLIFAGRILQDDNTIASYDIPETGFLVLLVRK 219
            MKLT KTL Q++  L++D ++SV + K+ IE+  GH V  QKLIF+G+IL DDNT+ASY+I E  FLV++V K
Sbjct:    1 MKLTFKTLQQKQFQLDVDEASSVADVKKKIEETQGHPVATQKLIFSGKILADDNTVASYNIGEKDFLVVMVSK 73          
BLAST of mRNA_M-pyrifera_M_contig88328.20513.1 vs. uniprot
Match: A0A075ATB5_ROZAC (UV excision repair protein RAD23 n=2 Tax=Rozella allomycis (strain CSF55) TaxID=988480 RepID=A0A075ATB5_ROZAC)

HSP 1 Score: 80.1 bits (196), Expect = 8.570e-16
Identity = 42/83 (50.60%), Postives = 56/83 (67.47%), Query Frame = 1
Query:    1 MKLTLKTLSQEELHLEIDASASVLEAKQAIEKKFGHAVEQQKLIFAGRILQDDNTIASYDIPETGFLVLLVRKVSCPALAAVS 249
            MK+TL+TL Q+   LE++  ++V   K  IE  FGH V  QKLI++G+ILQDD TIASY++ E  F VL++ K    A AAVS
Sbjct:    1 MKITLRTLQQKSYPLEVEPESTVSTLKTKIEGDFGHPVASQKLIYSGQILQDDRTIASYNVKENDFFVLMITKAPMKAPAAVS 83          
BLAST of mRNA_M-pyrifera_M_contig88328.20513.1 vs. uniprot
Match: A0A1X2H463_SYNRA (UV excision repair protein RAD23 n=1 Tax=Syncephalastrum racemosum TaxID=13706 RepID=A0A1X2H463_SYNRA)

HSP 1 Score: 77.4 bits (189), Expect = 9.960e-15
Identity = 41/81 (50.62%), Postives = 56/81 (69.14%), Query Frame = 1
Query:    1 MKLTLKTLSQEELHLEIDASASVLEAKQAIEKKFGHAVEQQKLIFAGRILQDDNTIASYDIPETGFLVLLVRKVSCPALAA 243
            MKLTLKTL Q++  LE+D++ +VL  KQ I+ + GHAVE QKLIF+G+IL +D  +   +I E  FLVL+V K    + AA
Sbjct:    4 MKLTLKTLQQKQFQLEVDSADTVLAVKQKIQDQEGHAVENQKLIFSGKILPNDKVVEECNIGEKDFLVLMVSKPKASSAAA 84          
BLAST of mRNA_M-pyrifera_M_contig88328.20513.1 vs. uniprot
Match: A0A8H3ARM9_9AGAM (UV excision repair protein RAD23 n=1 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A8H3ARM9_9AGAM)

HSP 1 Score: 76.3 bits (186), Expect = 2.610e-14
Identity = 42/86 (48.84%), Postives = 58/86 (67.44%), Query Frame = 1
Query:    1 MKLTLKTLSQEELHLEIDASASVLEAKQAIEKKFGHAVEQQKLIFAGRILQDDNTIASYDIPETGFLVLLVRKVSCPALAAVSLFT 258
            MK+T KTL Q++  ++ + S +VL+ KQ ++   GH VEQQKLI++G+IL DD T+ S  I E  FLV++V KVS   LA  S FT
Sbjct:   22 MKITFKTLQQKQFQIDAELSDTVLQLKQKVKDAQGHQVEQQKLIYSGKILSDDKTVESLGIKEKDFLVVMVSKVS---LATPSYFT 104          
BLAST of mRNA_M-pyrifera_M_contig88328.20513.1 vs. uniprot
Match: A0A1C7N6Y1_9FUNG (UV excision repair protein RAD23 n=1 Tax=Choanephora cucurbitarum TaxID=101091 RepID=A0A1C7N6Y1_9FUNG)

HSP 1 Score: 75.9 bits (185), Expect = 3.600e-14
Identity = 35/73 (47.95%), Postives = 54/73 (73.97%), Query Frame = 1
Query:    1 MKLTLKTLSQEELHLEIDASASVLEAKQAIEKKFGHAVEQQKLIFAGRILQDDNTIASYDIPETGFLVLLVRK 219
            +KLT KTL Q++  L++D+S +++  K  IE+  G+A+ QQKLI++G+ILQDD  +  YDI E GF+V++V K
Sbjct:    4 LKLTFKTLQQKQFVLDVDSSDTIMSVKGKIEETQGYAIAQQKLIYSGKILQDDKMLGEYDIKEAGFVVVMVSK 76          
BLAST of mRNA_M-pyrifera_M_contig88328.20513.1 vs. uniprot
Match: A0A0D0A586_9AGAM (UV excision repair protein RAD23 n=8 Tax=Suillus TaxID=5379 RepID=A0A0D0A586_9AGAM)

HSP 1 Score: 75.9 bits (185), Expect = 3.620e-14
Identity = 39/73 (53.42%), Postives = 51/73 (69.86%), Query Frame = 1
Query:    1 MKLTLKTLSQEELHLEIDASASVLEAKQAIEKKFGHAVEQQKLIFAGRILQDDNTIASYDIPETGFLVLLVRK 219
            MKLT+KTL Q+   LE + S ++ + KQ I    GH+VE QKLIF+G+IL DD T+AS +I E  FLVL+V K
Sbjct:    1 MKLTIKTLQQKMFQLEAEGSETIADLKQKISNTQGHSVESQKLIFSGKILTDDKTVASCEIKEKDFLVLMVSK 73          
BLAST of mRNA_M-pyrifera_M_contig88328.20513.1 vs. uniprot
Match: A0A1B7NEJ8_9AGAM (UV excision repair protein RAD23 n=2 Tax=Rhizopogon TaxID=5375 RepID=A0A1B7NEJ8_9AGAM)

HSP 1 Score: 75.5 bits (184), Expect = 4.930e-14
Identity = 42/91 (46.15%), Postives = 57/91 (62.64%), Query Frame = 1
Query:    1 MKLTLKTLSQEELHLEIDASASVLEAKQAIEKKFGHAVEQQKLIFAGRILQDDNTIASYDIPETGFLVLLVRKVSC----PALAAVSLFTP 261
            MKLT+KTL Q+   L+ + S ++ + KQ I    GH+V+ QKLIF+G++L DD T+AS +I E  FLVL+V K       P LA  S  TP
Sbjct:    1 MKLTIKTLQQKMFQLDAEGSETIGDLKQKISNTQGHSVDSQKLIFSGKVLSDDKTVASCEIKEKDFLVLMVSKPKAAAVQPPLATASTSTP 91          
BLAST of mRNA_M-pyrifera_M_contig88328.20513.1 vs. uniprot
Match: A0A1X2J2C4_9FUNG (UV excision repair protein RAD23 n=1 Tax=Absidia repens TaxID=90262 RepID=A0A1X2J2C4_9FUNG)

HSP 1 Score: 73.6 bits (179), Expect = 2.350e-13
Identity = 41/85 (48.24%), Postives = 56/85 (65.88%), Query Frame = 1
Query:    1 MKLTLKTLSQEELHLEIDASASVLEAKQAIEKKFGHAVEQQKLIFAGRILQDDNTIASYDIPETGFLVLLVRK--VSCPALAAVS 249
            MKLTLKTL QE+ +L+++AS ++L  K+ IE    H V  QKLIF+G+IL +  T+  Y I E  FLV++V K  V+ PA A  S
Sbjct:    1 MKLTLKTLQQEQFNLDVEASDTILSVKEKIESAKNHPVASQKLIFSGKILDNAKTVQDYSISEKDFLVVMVSKPKVTKPAAATQS 85          
BLAST of mRNA_M-pyrifera_M_contig88328.20513.1 vs. uniprot
Match: A0A1X2IB46_9FUNG (UV excision repair protein RAD23 n=1 Tax=Absidia repens TaxID=90262 RepID=A0A1X2IB46_9FUNG)

HSP 1 Score: 73.2 bits (178), Expect = 3.370e-13
Identity = 39/85 (45.88%), Postives = 57/85 (67.06%), Query Frame = 1
Query:    1 MKLTLKTLSQEELHLEIDASASVLEAKQAIEKKFGHAVEQQKLIFAGRILQDDNTIASYDIPETGFLVLLVRK--VSCPALAAVS 249
            M+LT+KTL QE+  LE++AS S+L  K+ I+    H VE QKLIF+G+IL +  T+  Y+I E  FLV+++ K  V+ PA+   S
Sbjct:    1 MQLTVKTLQQEQFKLEVEASDSILSVKEKIQNTKNHPVENQKLIFSGKILDNTKTVQDYNISEKDFLVVMISKPKVTKPAVTTSS 85          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig88328.20513.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4HHB6_9EUKA4.510e-1651.28UV excision repair protein RAD23 n=1 Tax=Vannella ... [more]
A0A8H7Q915_9FUNG5.140e-1654.79UV excision repair protein RAD23 n=1 Tax=Umbelopsi... [more]
A0A075ATB5_ROZAC8.570e-1650.60UV excision repair protein RAD23 n=2 Tax=Rozella a... [more]
A0A1X2H463_SYNRA9.960e-1550.62UV excision repair protein RAD23 n=1 Tax=Syncephal... [more]
A0A8H3ARM9_9AGAM2.610e-1448.84UV excision repair protein RAD23 n=1 Tax=Rhizocton... [more]
A0A1C7N6Y1_9FUNG3.600e-1447.95UV excision repair protein RAD23 n=1 Tax=Choanepho... [more]
A0A0D0A586_9AGAM3.620e-1453.42UV excision repair protein RAD23 n=8 Tax=Suillus T... [more]
A0A1B7NEJ8_9AGAM4.930e-1446.15UV excision repair protein RAD23 n=2 Tax=Rhizopogo... [more]
A0A1X2J2C4_9FUNG2.350e-1348.24UV excision repair protein RAD23 n=1 Tax=Absidia r... [more]
A0A1X2IB46_9FUNG3.370e-1345.88UV excision repair protein RAD23 n=1 Tax=Absidia r... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig88328contigM-pyrifera_M_contig88328:414..763 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score73.9
Seed ortholog evalue4.2e-11
Seed eggNOG ortholog936053.I1C797
Preferred nameRAD23
KEGG koko:K10839
KEGG Pathwayko03420,ko04141,map03420,map04141
Hectar predicted targeting categoryother localisation
GOsGO:0000109,GO:0000111,GO:0000122,GO:0000502,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0006139,GO:0006259,GO:0006281,GO:0006289,GO:0006355,GO:0006357,GO:0006464,GO:0006508,GO:0006511,GO:0006517,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009100,GO:0009889,GO:0009890,GO:0009892,GO:0009894,GO:0009895,GO:0009987,GO:0010033,GO:0010243,GO:0010468,GO:0010498,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0019219,GO:0019222,GO:0019538,GO:0019941,GO:0030163,GO:0030433,GO:0030674,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031593,GO:0032182,GO:0032991,GO:0033554,GO:0034641,GO:0034976,GO:0036211,GO:0036503,GO:0042176,GO:0042177,GO:0042221,GO:0043130,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045892,GO:0045934,GO:0046483,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0051252,GO:0051253,GO:0051603,GO:0051716,GO:0060090,GO:0060255,GO:0065007,GO:0070628,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:0140030,GO:1901135,GO:1901360,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:1905368,GO:1905369,GO:1990391,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.XPC-binding domain
EggNOG OGs1GSIT@112252,38CFS@33154,3NWKD@4751,COG5272@1,KOG0011@2759
COG Functional cat.L
Best tax levelFungi incertae sedis
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03051,ko03400
Exons2
Model size273
Cds size273
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816792.877568-CDS-M-pyrifera_M_contig88328:413..4791622816792.877568-CDS-M-pyrifera_M_contig88328:413..479Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88328 414..479 +
1692278181.4881094-CDS-M-pyrifera_M_contig88328:413..4791692278181.4881094-CDS-M-pyrifera_M_contig88328:413..479Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88328 414..479 +
1622816792.8889654-CDS-M-pyrifera_M_contig88328:556..7631622816792.8889654-CDS-M-pyrifera_M_contig88328:556..763Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88328 557..763 +
1692278181.508545-CDS-M-pyrifera_M_contig88328:556..7631692278181.508545-CDS-M-pyrifera_M_contig88328:556..763Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88328 557..763 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig88328.20513.1prot_M-pyrifera_M_contig88328.20513.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig88328 414..763 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig88328.20513.1

>prot_M-pyrifera_M_contig88328.20513.1 ID=prot_M-pyrifera_M_contig88328.20513.1|Name=mRNA_M-pyrifera_M_contig88328.20513.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=91bp
MKLTLKTLSQEELHLEIDASASVLEAKQAIEKKFGHAVEQQKLIFAGRIL
QDDNTIASYDIPETGFLVLLVRKVSCPALAAVSLFTPLTRT
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mRNA from alignment at M-pyrifera_M_contig88328:414..763+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig88328.20513.1 ID=mRNA_M-pyrifera_M_contig88328.20513.1|Name=mRNA_M-pyrifera_M_contig88328.20513.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=350bp|location=Sequence derived from alignment at M-pyrifera_M_contig88328:414..763+ (Macrocystis pyrifera P11B4 male)
ATGAAGCTCACACTCAAAACGCTCAGCCAGGAGGAGTTGCACCTGGAGAT CGATGCCTCTGCATCCGTGCGTTCTTTCTTGCCCCCCAGCCGCCAGTTTG GCAGTGCGTAGCGAGGGCGTGGGCCGCTGACCGATTGCTGCAGGTTTTGG AGGCCAAACAGGCGATTGAGAAGAAATTCGGCCATGCAGTCGAGCAGCAG AAGCTGATCTTCGCCGGTAGGATTCTCCAGGATGACAACACAATTGCCTC GTACGACATACCCGAGACTGGCTTCCTAGTTCTTCTCGTCCGCAAGGTGA GTTGTCCTGCTCTTGCGGCTGTTTCCCTTTTCACACCGCTGACGCGCACA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig88328:414..763+

>mRNA_M-pyrifera_M_contig88328.20513.1 ID=mRNA_M-pyrifera_M_contig88328.20513.1|Name=mRNA_M-pyrifera_M_contig88328.20513.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=546bp|location=Sequence derived from alignment at M-pyrifera_M_contig88328:414..763+ (Macrocystis pyrifera P11B4 male)
ATGAAGCTCACACTCAAAACGCTCAGCCAGGAGGAGTTGCACCTGGAGAT
CGATGCCTCTGCATCCATGAAGCTCACACTCAAAACGCTCAGCCAGGAGG
AGTTGCACCTGGAGATCGATGCCTCTGCATCCGTTTTGGAGGCCAAACAG
GCGATTGAGAAGAAATTCGGCCATGCAGTCGAGCAGCAGAAGCTGATCTT
CGCCGGTAGGATTCTCCAGGATGACAACACAATTGCCTCGTACGACATAC
CCGAGACTGGCTTCCTAGTTCTTCTCGTCCGCAAGGTGAGTTGTCCTGCT
CTTGCGGCTGTTTCCCTTTTCACACCGCTGACGCGCACAGTTTTGGAGGC
CAAACAGGCGATTGAGAAGAAATTCGGCCATGCAGTCGAGCAGCAGAAGC
TGATCTTCGCCGGTAGGATTCTCCAGGATGACAACACAATTGCCTCGTAC
GACATACCCGAGACTGGCTTCCTAGTTCTTCTCGTCCGCAAGGTGAGTTG
TCCTGCTCTTGCGGCTGTTTCCCTTTTCACACCGCTGACGCGCACA
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