mRNA_M-pyrifera_M_contig88324.20512.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig88324.20512.1
Unique NamemRNA_M-pyrifera_M_contig88324.20512.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig88324.20512.1 vs. uniprot
Match: A0A7Y2DAQ4_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2DAQ4_9ACTN)

HSP 1 Score: 121 bits (304), Expect = 1.030e-30
Identity = 71/180 (39.44%), Postives = 110/180 (61.11%), Query Frame = 1 
Query:   22 DEIEAILRRASELGATSSADV-AELDSATLAEIAAEVGIPASAVAAAVAERRVGI-DADTSLLDRLVGPDQIWAGRQSAESSDEANERVIEWLERGHGLRPRTTDEGVVIATRRSGLAGSVVRGVRSAQGKGGLGKVREVRGTAVSLDEG-GAVALMADISDRRTGAVAGGGGVAALGTL 552
            DE++ +LRRA ++    +A+    L   +L +IAAE+ IP SA+A A+AE+ VG+ D  T ++DRLVGP  IW+ R++  +++  ++  + WL RGHGL+ R   +G ++ATRR    G +   VR  +G+GGL + R+V    V  D+  G V L ADI  +R  A+AGG  +A  G +
Sbjct:   18 DEVQLVLRRALDIAHLPAAEADPTLSPESLFDIAAELDIPESALATAIAEQAVGLTDQPTGVVDRLVGPSVIWSQREATGNAEAKSQAAVAWLTRGHGLKTRVATDGTIVATRRRDAIGKLTNSVRGLRGRGGLARSRQVSAAVVGFDDASGVVCLAADIEQQRGAAIAGGTIIAIAGAI 197
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig88324.20512.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7Y2DAQ4_9ACTN1.030e-3039.44Uncharacterized protein n=1 Tax=Acidimicrobiales b... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig88324contigM-pyrifera_M_contig88324:251..802 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size552
Cds size552
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816792.8434322-CDS-M-pyrifera_M_contig88324:250..8021622816792.8434322-CDS-M-pyrifera_M_contig88324:250..802Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88324 251..802 +
1692278181.4670966-CDS-M-pyrifera_M_contig88324:250..8021692278181.4670966-CDS-M-pyrifera_M_contig88324:250..802Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88324 251..802 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig88324.20512.1prot_M-pyrifera_M_contig88324.20512.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig88324 251..802 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig88324.20512.1

>prot_M-pyrifera_M_contig88324.20512.1 ID=prot_M-pyrifera_M_contig88324.20512.1|Name=mRNA_M-pyrifera_M_contig88324.20512.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=184bp
PIVQFDHDEIEAILRRASELGATSSADVAELDSATLAEIAAEVGIPASAV
AAAVAERRVGIDADTSLLDRLVGPDQIWAGRQSAESSDEANERVIEWLER
GHGLRPRTTDEGVVIATRRSGLAGSVVRGVRSAQGKGGLGKVREVRGTAV
SLDEGGAVALMADISDRRTGAVAGGGGVAALGTL
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mRNA from alignment at M-pyrifera_M_contig88324:251..802+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig88324.20512.1 ID=mRNA_M-pyrifera_M_contig88324.20512.1|Name=mRNA_M-pyrifera_M_contig88324.20512.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=552bp|location=Sequence derived from alignment at M-pyrifera_M_contig88324:251..802+ (Macrocystis pyrifera P11B4 male)
CCGATCGTCCAGTTCGACCACGACGAGATCGAAGCCATCCTTCGCCGAGC
AAGTGAGTTGGGTGCCACCTCGAGCGCCGACGTCGCCGAACTCGACTCGG
CCACCCTGGCCGAGATCGCGGCCGAGGTCGGCATCCCGGCGTCGGCCGTC
GCTGCCGCCGTTGCCGAGCGCCGCGTGGGGATCGACGCCGACACCAGCCT
GCTCGACCGCCTCGTCGGCCCCGACCAGATCTGGGCCGGTCGTCAGTCGG
CAGAATCCAGCGACGAGGCCAACGAGCGAGTCATCGAATGGCTCGAGCGG
GGCCACGGCCTTCGCCCCCGCACCACCGACGAAGGCGTCGTGATCGCCAC
CCGCCGATCCGGACTCGCCGGGTCCGTCGTGCGGGGAGTCCGCAGCGCCC
AGGGCAAGGGCGGCCTGGGCAAGGTTCGCGAGGTGCGCGGCACGGCAGTC
TCGCTGGACGAGGGCGGAGCGGTCGCGCTGATGGCCGACATCTCCGATCG
ACGCACCGGCGCCGTGGCCGGTGGGGGAGGCGTGGCCGCGCTCGGAACCC
TG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig88324:251..802+

>mRNA_M-pyrifera_M_contig88324.20512.1 ID=mRNA_M-pyrifera_M_contig88324.20512.1|Name=mRNA_M-pyrifera_M_contig88324.20512.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1104bp|location=Sequence derived from alignment at M-pyrifera_M_contig88324:251..802+ (Macrocystis pyrifera P11B4 male)
CCGATCGTCCAGTTCGACCACGACGAGATCGAAGCCATCCTTCGCCGAGC
AAGTGAGTTGGGTGCCACCTCGAGCGCCGACGTCGCCGAACTCGACTCGG
CCACCCTGGCCGAGATCGCGGCCGAGGTCGGCATCCCGGCGTCGGCCGTC
GCTGCCGCCGTTGCCGAGCGCCGCGTGGGGATCGACGCCGACACCAGCCT
GCTCGACCGCCTCGTCGGCCCCGACCAGATCTGGGCCGGTCGTCAGTCGG
CAGAATCCAGCGACGAGGCCAACGAGCGAGTCATCGAATGGCTCGAGCGG
GGCCACGGCCTTCGCCCCCGCACCACCGACGAAGGCGTCGTGATCGCCAC
CCGCCGATCCGGACTCGCCGGGTCCGTCGTGCGGGGAGTCCGCAGCGCCC
AGGGCAAGGGCGGCCTGGGCAAGGTTCGCGAGGTGCGCGGCACGGCAGTC
TCGCTGGACGAGGGCGGAGCGGTCGCGCTGATGGCCGACATCTCCGATCG
ACGCACCGGCGCCGTGGCCGGTGGGGGAGGCGTGGCCGCGCTCGGAACCC
TGCCGATCGTCCAGTTCGACCACGACGAGATCGAAGCCATCCTTCGCCGA
GCAAGTGAGTTGGGTGCCACCTCGAGCGCCGACGTCGCCGAACTCGACTC
GGCCACCCTGGCCGAGATCGCGGCCGAGGTCGGCATCCCGGCGTCGGCCG
TCGCTGCCGCCGTTGCCGAGCGCCGCGTGGGGATCGACGCCGACACCAGC
CTGCTCGACCGCCTCGTCGGCCCCGACCAGATCTGGGCCGGTCGTCAGTC
GGCAGAATCCAGCGACGAGGCCAACGAGCGAGTCATCGAATGGCTCGAGC
GGGGCCACGGCCTTCGCCCCCGCACCACCGACGAAGGCGTCGTGATCGCC
ACCCGCCGATCCGGACTCGCCGGGTCCGTCGTGCGGGGAGTCCGCAGCGC
CCAGGGCAAGGGCGGCCTGGGCAAGGTTCGCGAGGTGCGCGGCACGGCAG
TCTCGCTGGACGAGGGCGGAGCGGTCGCGCTGATGGCCGACATCTCCGAT
CGACGCACCGGCGCCGTGGCCGGTGGGGGAGGCGTGGCCGCGCTCGGAAC
CCTG
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