mRNA_M-pyrifera_M_contig88317.20510.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig88317.20510.1
Unique NamemRNA_M-pyrifera_M_contig88317.20510.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig88317.20510.1 vs. uniprot
Match: D8LDD1_ECTSI (Similar to ATP binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDD1_ECTSI)

HSP 1 Score: 63.2 bits (152), Expect = 5.370e-11
Identity = 31/45 (68.89%), Postives = 34/45 (75.56%), Query Frame = 1
Query:   16 PSYFQ------FCKIDAEKCPYLTEKLNIFVMPTILLISESQTIH 132
            P++F+      FCKIDAEK PYLTEKLNIFVMPTILLI    TIH
Sbjct:   80 PAFFEATKKSKFCKIDAEKSPYLTEKLNIFVMPTILLIKGGHTIH 124          
BLAST of mRNA_M-pyrifera_M_contig88317.20510.1 vs. uniprot
Match: A0A836CBP1_9STRA (ATP binding protein-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBP1_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 6.220e-9
Identity = 24/35 (68.57%), Postives = 30/35 (85.71%), Query Frame = 1
Query:   28 QFCKIDAEKCPYLTEKLNIFVMPTILLISESQTIH 132
            +FC+IDAEK PYL EKLNI VMPTILL+ + +T+H
Sbjct:  122 RFCRIDAEKSPYLVEKLNIVVMPTILLVKDGKTVH 156          
BLAST of mRNA_M-pyrifera_M_contig88317.20510.1 vs. uniprot
Match: A0A4D9D6P5_9STRA (Thioredoxin domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D6P5_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 4.960e-7
Identity = 21/35 (60.00%), Postives = 29/35 (82.86%), Query Frame = 1
Query:   28 QFCKIDAEKCPYLTEKLNIFVMPTILLISESQTIH 132
            +FCKI+AEK PYL EKLN+++MPTI+ I + +T H
Sbjct:  118 RFCKINAEKSPYLVEKLNVYMMPTIVCIKDQKTTH 152          
BLAST of mRNA_M-pyrifera_M_contig88317.20510.1 vs. uniprot
Match: UPI0006258DF8 (thioredoxin domain-containing protein 9 n=1 Tax=Orussus abietinus TaxID=222816 RepID=UPI0006258DF8)

HSP 1 Score: 51.6 bits (122), Expect = 1.510e-6
Identity = 20/33 (60.61%), Postives = 29/33 (87.88%), Query Frame = 1
Query:   28 QFCKIDAEKCPYLTEKLNIFVMPTILLISESQT 126
            +FCK+D E+CP+LTE+L I ++PTI LI++SQT
Sbjct:  113 RFCKLDVERCPFLTERLRIRIIPTIALITDSQT 145          
BLAST of mRNA_M-pyrifera_M_contig88317.20510.1 vs. uniprot
Match: K8F6S4_9CHLO (Thioredoxin domain-containing protein 9 n=1 Tax=Bathycoccus prasinos TaxID=41875 RepID=K8F6S4_9CHLO)

HSP 1 Score: 50.8 bits (120), Expect = 2.640e-6
Identity = 23/43 (53.49%), Postives = 32/43 (74.42%), Query Frame = 1
Query:    1 LSATTPSYFQ--FCKIDAEKCPYLTEKLNIFVMPTILLISESQ 123
            L A  P + +  FC+IDAEK PYLTEKL IF++PT+ L+S+ +
Sbjct:   75 LRALAPMHLETLFCEIDAEKSPYLTEKLKIFMLPTLALVSKEK 117          
BLAST of mRNA_M-pyrifera_M_contig88317.20510.1 vs. uniprot
Match: A0A7S1CD91_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CD91_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 4.500e-6
Identity = 18/35 (51.43%), Postives = 30/35 (85.71%), Query Frame = 1
Query:   28 QFCKIDAEKCPYLTEKLNIFVMPTILLISESQTIH 132
            +FCK+DAEK P+L E+LNI+++PT++L+ + +T H
Sbjct:  119 KFCKVDAEKSPFLCERLNIWMLPTLVLVKDGKTEH 153          
BLAST of mRNA_M-pyrifera_M_contig88317.20510.1 vs. uniprot
Match: A0A7R8UPG6_HERIL (Hypothetical protein n=1 Tax=Hermetia illucens TaxID=343691 RepID=A0A7R8UPG6_HERIL)

HSP 1 Score: 50.1 bits (118), Expect = 5.640e-6
Identity = 21/33 (63.64%), Postives = 28/33 (84.85%), Query Frame = 1
Query:   28 QFCKIDAEKCPYLTEKLNIFVMPTILLISESQT 126
            +FCKI+AEKCP+LT++L I V+PTI LI +S T
Sbjct:  113 RFCKINAEKCPFLTQRLRIKVIPTIALIKDSHT 145          
BLAST of mRNA_M-pyrifera_M_contig88317.20510.1 vs. uniprot
Match: A0A6V1PIS8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1PIS8_HETAK)

HSP 1 Score: 50.1 bits (118), Expect = 6.610e-6
Identity = 21/35 (60.00%), Postives = 27/35 (77.14%), Query Frame = 1
Query:   28 QFCKIDAEKCPYLTEKLNIFVMPTILLISESQTIH 132
            +F KIDAEK P+L E+LNIF+MPT+L I E +  H
Sbjct:  124 RFVKIDAEKSPFLVERLNIFMMPTVLCIKEGKVAH 158          
BLAST of mRNA_M-pyrifera_M_contig88317.20510.1 vs. uniprot
Match: A0A8J2PE44_9HEXA (Hypothetical protein n=1 Tax=Allacma fusca TaxID=39272 RepID=A0A8J2PE44_9HEXA)

HSP 1 Score: 49.7 bits (117), Expect = 7.830e-6
Identity = 19/34 (55.88%), Postives = 29/34 (85.29%), Query Frame = 1
Query:   28 QFCKIDAEKCPYLTEKLNIFVMPTILLISESQTI 129
            +FCKI+AEKCP+LT++L I V+P +L++ +SQ I
Sbjct:  119 RFCKINAEKCPFLTDRLKIKVLPAVLILKDSQVI 152          
BLAST of mRNA_M-pyrifera_M_contig88317.20510.1 vs. uniprot
Match: UPI0007383B02 (thioredoxin domain-containing protein 9 isoform X1 n=1 Tax=Diachasma alloeum TaxID=454923 RepID=UPI0007383B02)

HSP 1 Score: 49.7 bits (117), Expect = 8.030e-6
Identity = 20/33 (60.61%), Postives = 29/33 (87.88%), Query Frame = 1
Query:   28 QFCKIDAEKCPYLTEKLNIFVMPTILLISESQT 126
            +FCK++ E+CP+LTE+L I V+PTI LIS+S+T
Sbjct:  113 RFCKLNVERCPFLTERLRIKVIPTIALISDSKT 145          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig88317.20510.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDD1_ECTSI5.370e-1168.89Similar to ATP binding protein n=1 Tax=Ectocarpus ... [more]
A0A836CBP1_9STRA6.220e-968.57ATP binding protein-like protein n=1 Tax=Tribonema... [more]
A0A4D9D6P5_9STRA4.960e-760.00Thioredoxin domain-containing protein n=3 Tax=Mono... [more]
UPI0006258DF81.510e-660.61thioredoxin domain-containing protein 9 n=1 Tax=Or... [more]
K8F6S4_9CHLO2.640e-653.49Thioredoxin domain-containing protein 9 n=1 Tax=Ba... [more]
A0A7S1CD91_9STRA4.500e-651.43Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A7R8UPG6_HERIL5.640e-663.64Hypothetical protein n=1 Tax=Hermetia illucens Tax... [more]
A0A6V1PIS8_HETAK6.610e-660.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A8J2PE44_9HEXA7.830e-655.88Hypothetical protein n=1 Tax=Allacma fusca TaxID=3... [more]
UPI0007383B028.030e-660.61thioredoxin domain-containing protein 9 isoform X1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig88317contigM-pyrifera_M_contig88317:521..652 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.4
Seed ortholog evalue6.1e-08
Seed eggNOG ortholog2880.D8LDD1
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.queuosine biosynthetic process
EggNOG OGsCOG0526@1,KOG1672@2759
COG Functional cat.CO
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size132
Cds size132
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816792.7712097-CDS-M-pyrifera_M_contig88317:520..6521622816792.7712097-CDS-M-pyrifera_M_contig88317:520..652Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88317 521..652 -
1692278181.4402823-CDS-M-pyrifera_M_contig88317:520..6521692278181.4402823-CDS-M-pyrifera_M_contig88317:520..652Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88317 521..652 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig88317.20510.1prot_M-pyrifera_M_contig88317.20510.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig88317 521..652 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig88317.20510.1

>prot_M-pyrifera_M_contig88317.20510.1 ID=prot_M-pyrifera_M_contig88317.20510.1|Name=mRNA_M-pyrifera_M_contig88317.20510.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=44bp
LSATTPSYFQFCKIDAEKCPYLTEKLNIFVMPTILLISESQTIH
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mRNA from alignment at M-pyrifera_M_contig88317:521..652-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig88317.20510.1 ID=mRNA_M-pyrifera_M_contig88317.20510.1|Name=mRNA_M-pyrifera_M_contig88317.20510.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=132bp|location=Sequence derived from alignment at M-pyrifera_M_contig88317:521..652- (Macrocystis pyrifera P11B4 male)
CTCTCCGCCACAACGCCTTCCTACTTCCAGTTCTGCAAGATTGACGCGGA AAAATGTCCCTACCTGACGGAGAAGCTCAACATTTTCGTGATGCCCACGA TTCTGCTCATCAGTGAGAGCCAGACCATACAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig88317:521..652-

>mRNA_M-pyrifera_M_contig88317.20510.1 ID=mRNA_M-pyrifera_M_contig88317.20510.1|Name=mRNA_M-pyrifera_M_contig88317.20510.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=264bp|location=Sequence derived from alignment at M-pyrifera_M_contig88317:521..652- (Macrocystis pyrifera P11B4 male)
CTCTCCGCCACAACGCCTTCCTACTTCCAGTTCTGCAAGATTGACGCGGA
AAAATGTCCCTACCTGACGGAGAAGCTCAACATTTTCGTGATGCCCACGA
TTCTGCTCATCAGTGAGAGCCAGACCATACACCTCTCCGCCACAACGCCT
TCCTACTTCCAGTTCTGCAAGATTGACGCGGAAAAATGTCCCTACCTGAC
GGAGAAGCTCAACATTTTCGTGATGCCCACGATTCTGCTCATCAGTGAGA
GCCAGACCATACAC
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