mRNA_M-pyrifera_M_contig88307.20508.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig88307.20508.1
Unique NamemRNA_M-pyrifera_M_contig88307.20508.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig88307.20508.1 vs. uniprot
Match: A0A6H5KS52_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS52_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 3.470e-23
Identity = 42/49 (85.71%), Postives = 46/49 (93.88%), Query Frame = 1 
Query:    4 RLRILARVGMYAARAWDDHDLLHQCIEVERDAHWWHVLTSLGVPFDTRG 150
            RLRILA VGMYAARAWD+HDLLHQC+EVERD+HWWHVLTSLG+ FD RG
Sbjct:  432 RLRILAGVGMYAARAWDNHDLLHQCMEVERDSHWWHVLTSLGITFDNRG 480
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BLAST of mRNA_M-pyrifera_M_contig88307.20508.1 vs. uniprot
Match: D8LSU3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSU3_ECTSI)

HSP 1 Score: 99.4 bits (246), Expect = 4.730e-23
Identity = 41/49 (83.67%), Postives = 46/49 (93.88%), Query Frame = 1 
Query:    4 RLRILARVGMYAARAWDDHDLLHQCIEVERDAHWWHVLTSLGVPFDTRG 150
            RLR+LA VGMYAARAWD+HDLLHQC+EVERD+HWWHVLTSLG+ FD RG
Sbjct: 1871 RLRVLAGVGMYAARAWDNHDLLHQCMEVERDSHWWHVLTSLGIAFDNRG 1919
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BLAST of mRNA_M-pyrifera_M_contig88307.20508.1 vs. uniprot
Match: A0A0N7L774_PLAHL (Kinetochore component n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L774_PLAHL)

HSP 1 Score: 58.2 bits (139), Expect = 1.500e-8
Identity = 24/48 (50.00%), Postives = 31/48 (64.58%), Query Frame = 1 
Query:    4 RLRILARVGMYAARAWDDHDLLHQCIEVERDAHWWHVLTSLGVPFDTR 147
            R + LA +G  AARAW     LHQC+E+E +A WWH LT LG+  D +
Sbjct: 1460 RFQHLALIGADAARAWQQIAFLHQCVELEENARWWHYLTLLGIECDHK 1507
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BLAST of mRNA_M-pyrifera_M_contig88307.20508.1 vs. uniprot
Match: A0A2D4CBX0_PYTIN (Rod_C domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CBX0_PYTIN)

HSP 1 Score: 57.8 bits (138), Expect = 2.040e-8
Identity = 24/48 (50.00%), Postives = 31/48 (64.58%), Query Frame = 1 
Query:    4 RLRILARVGMYAARAWDDHDLLHQCIEVERDAHWWHVLTSLGVPFDTR 147
            R + LAR+G  AARAW     LHQC+E+E +A WWH L  LG+  D +
Sbjct:  125 RFQQLARIGADAARAWQQIAFLHQCVELEGNARWWHYLKLLGIQCDHK 172
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BLAST of mRNA_M-pyrifera_M_contig88307.20508.1 vs. uniprot
Match: A0A6A3NKS0_9STRA (Rod_C domain-containing protein n=6 Tax=Phytophthora TaxID=4783 RepID=A0A6A3NKS0_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 3.820e-8
Identity = 23/48 (47.92%), Postives = 31/48 (64.58%), Query Frame = 1 
Query:    4 RLRILARVGMYAARAWDDHDLLHQCIEVERDAHWWHVLTSLGVPFDTR 147
            R + LA +G  AARAW +   LHQC+E+E +A WWH L  LG+  D +
Sbjct: 1486 RFQQLAHIGADAARAWQEIAFLHQCVELEGNARWWHYLNLLGIECDHK 1533
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BLAST of mRNA_M-pyrifera_M_contig88307.20508.1 vs. uniprot
Match: D0NTT7_PHYIT (Rod_C domain-containing protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0NTT7_PHYIT)

HSP 1 Score: 55.8 bits (133), Expect = 9.770e-8
Identity = 24/48 (50.00%), Postives = 31/48 (64.58%), Query Frame = 1 
Query:    4 RLRILARVGMYAARAWDDHDLLHQCIEVERDAHWWHVLTSLGVPFDTR 147
            R + LA VG  AARAW     LHQC+E+E +A WWH L+ LG+  D +
Sbjct:  623 RFQKLAFVGADAARAWQQIAFLHQCVELEGNARWWHYLSLLGIECDHK 670
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BLAST of mRNA_M-pyrifera_M_contig88307.20508.1 vs. uniprot
Match: A0A833VZF6_PHYIN (Rough deal protein C-terminal region n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833VZF6_PHYIN)

HSP 1 Score: 55.8 bits (133), Expect = 9.780e-8
Identity = 24/48 (50.00%), Postives = 31/48 (64.58%), Query Frame = 1 
Query:    4 RLRILARVGMYAARAWDDHDLLHQCIEVERDAHWWHVLTSLGVPFDTR 147
            R + LA VG  AARAW     LHQC+E+E +A WWH L+ LG+  D +
Sbjct: 1272 RFQKLAFVGADAARAWQQIAFLHQCVELEGNARWWHYLSLLGIECDHK 1319
[Close]
BLAST of mRNA_M-pyrifera_M_contig88307.20508.1 vs. uniprot
Match: G4Z2Z9_PHYSP (Rod_C domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4Z2Z9_PHYSP)

HSP 1 Score: 55.5 bits (132), Expect = 1.340e-7
Identity = 24/48 (50.00%), Postives = 30/48 (62.50%), Query Frame = 1 
Query:    4 RLRILARVGMYAARAWDDHDLLHQCIEVERDAHWWHVLTSLGVPFDTR 147
            R + LA VG  AARAW     LHQC+E+E +A WWH L  LG+  D +
Sbjct:  655 RFQQLAFVGADAARAWQQIAFLHQCVELEGNARWWHYLNLLGIECDHK 702
[Close]
BLAST of mRNA_M-pyrifera_M_contig88307.20508.1 vs. uniprot
Match: A0A0W8DCK1_PHYNI (Uncharacterized protein n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DCK1_PHYNI)

HSP 1 Score: 55.1 bits (131), Expect = 1.820e-7
Identity = 23/48 (47.92%), Postives = 30/48 (62.50%), Query Frame = 1 
Query:    4 RLRILARVGMYAARAWDDHDLLHQCIEVERDAHWWHVLTSLGVPFDTR 147
            R + LA +G  AARAW     LHQC+E+E +A WWH L  LG+  D +
Sbjct:  692 RFQKLAFIGADAARAWQQIAFLHQCVELEGNARWWHYLNLLGIECDHK 739
[Close]
BLAST of mRNA_M-pyrifera_M_contig88307.20508.1 vs. uniprot
Match: A0A225V152_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225V152_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 1.820e-7
Identity = 23/48 (47.92%), Postives = 30/48 (62.50%), Query Frame = 1 
Query:    4 RLRILARVGMYAARAWDDHDLLHQCIEVERDAHWWHVLTSLGVPFDTR 147
            R + LA +G  AARAW     LHQC+E+E +A WWH L  LG+  D +
Sbjct:  756 RFQRLACIGADAARAWQQIAFLHQCVELEGNARWWHYLNLLGIECDHK 803
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig88307.20508.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A6H5KS52_9PHAE3.470e-2385.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LSU3_ECTSI4.730e-2383.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A0N7L774_PLAHL1.500e-850.00Kinetochore component n=1 Tax=Plasmopara halstedii... [more]
A0A2D4CBX0_PYTIN2.040e-850.00Rod_C domain-containing protein n=1 Tax=Pythium in... [more]
A0A6A3NKS0_9STRA3.820e-847.92Rod_C domain-containing protein n=6 Tax=Phytophtho... [more]
D0NTT7_PHYIT9.770e-850.00Rod_C domain-containing protein n=1 Tax=Phytophtho... [more]
A0A833VZF6_PHYIN9.780e-850.00Rough deal protein C-terminal region n=1 Tax=Phyto... [more]
G4Z2Z9_PHYSP1.340e-750.00Rod_C domain-containing protein n=1 Tax=Phytophtho... [more]
A0A0W8DCK1_PHYNI1.820e-747.92Uncharacterized protein n=1 Tax=Phytophthora nicot... [more]
A0A225V152_9STRA1.820e-747.92Uncharacterized protein (Fragment) n=1 Tax=Phytoph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig88307contigM-pyrifera_M_contig88307:342..494 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size153
Cds size123
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816792.5642078-UTR-M-pyrifera_M_contig88307:341..3711622816792.5642078-UTR-M-pyrifera_M_contig88307:341..371Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig88307 342..371 +
1692278181.2828796-UTR-M-pyrifera_M_contig88307:341..3711692278181.2828796-UTR-M-pyrifera_M_contig88307:341..371Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig88307 342..371 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816792.577257-CDS-M-pyrifera_M_contig88307:371..4941622816792.577257-CDS-M-pyrifera_M_contig88307:371..494Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88307 372..494 +
1692278181.2955647-CDS-M-pyrifera_M_contig88307:371..4941692278181.2955647-CDS-M-pyrifera_M_contig88307:371..494Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88307 372..494 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig88307.20508.1prot_M-pyrifera_M_contig88307.20508.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig88307 372..494 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig88307.20508.1

>prot_M-pyrifera_M_contig88307.20508.1 ID=prot_M-pyrifera_M_contig88307.20508.1|Name=mRNA_M-pyrifera_M_contig88307.20508.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=41bp
MYAARAWDDHDLLHQCIEVERDAHWWHVLTSLGVPFDTRG*
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mRNA from alignment at M-pyrifera_M_contig88307:342..494+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig88307.20508.1 ID=mRNA_M-pyrifera_M_contig88307.20508.1|Name=mRNA_M-pyrifera_M_contig88307.20508.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=153bp|location=Sequence derived from alignment at M-pyrifera_M_contig88307:342..494+ (Macrocystis pyrifera P11B4 male)
AGAAGGCTAAGAATATTGGCGCGGGTGGGGATGTACGCTGCTCGTGCTTG
GGATGACCACGACCTTCTGCACCAGTGCATCGAGGTGGAGCGCGACGCTC
ATTGGTGGCACGTGCTCACTAGCCTTGGCGTCCCCTTCGACACTAGGGGG
TGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig88307:342..494+

>mRNA_M-pyrifera_M_contig88307.20508.1 ID=mRNA_M-pyrifera_M_contig88307.20508.1|Name=mRNA_M-pyrifera_M_contig88307.20508.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=246bp|location=Sequence derived from alignment at M-pyrifera_M_contig88307:342..494+ (Macrocystis pyrifera P11B4 male)
ATGTACGCTGCTCGTGCTTGGGATGACCACGACCTTCTGCACCAGTGCAT
CGAGGTGGAGCGCGACGCTCATTGGTGGCACGTGCTCACTAGCCTTGGCG
TCCCCTTCGACACTAGGGGGTGAATGTACGCTGCTCGTGCTTGGGATGAC
CACGACCTTCTGCACCAGTGCATCGAGGTGGAGCGCGACGCTCATTGGTG
GCACGTGCTCACTAGCCTTGGCGTCCCCTTCGACACTAGGGGGTGA
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