mRNA_M-pyrifera_M_contig88278.20505.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig88278.20505.1
Unique NamemRNA_M-pyrifera_M_contig88278.20505.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig88278.20505.1 vs. uniprot
Match: A0A061SMB8_9CHLO (Purine nucleosidase n=2 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061SMB8_9CHLO)

HSP 1 Score: 87.8 bits (216), Expect = 3.880e-19
Identity = 53/133 (39.85%), Postives = 78/133 (58.65%), Query Frame = 1
Query:    4 PLLMSPLELTHTILCTDEVMKKLETALKDAPSFLSLLTTLLSFFADTYRDVFRIPAPPLHDPMAVVRVVAPHLITESAPCLVRADTSRGPCSGRTIVDLLRITEPGKDSREWNCDVATKADVEKVWDFIFDAI 402
            PL+M P+E+THT L T +V++++    KD+P F +L+  LL+FF DTYR+VF    PPLHDP  V   +AP++  E     V  +TS    +G+T+ D+      G+  R  N  VA + DV + WD +  AI
Sbjct:   40 PLVMVPIEVTHTALVTPDVLERIHR--KDSP-FCTLVCRLLTFFRDTYREVFHFDHPPLHDPCVVAYCIAPNIF-EVKKMRVDIETSSQLSAGQTVCDVW-----GQSGRPPNASVAVRMDVAEFWDMMVAAI 163          
BLAST of mRNA_M-pyrifera_M_contig88278.20505.1 vs. uniprot
Match: A0A816RAU2_9BILA (Hypothetical protein n=3 Tax=Rotaria TaxID=231623 RepID=A0A816RAU2_9BILA)

HSP 1 Score: 88.2 bits (217), Expect = 3.540e-18
Identity = 57/134 (42.54%), Postives = 75/134 (55.97%), Query Frame = 1
Query:    7 LLMSPLELTHTILCTDEVMKKLETALKDAPSFLSLLTTLLSFFADTYRDVFRIPAPPLHDPMAVVRVVAPHLITESAPCLVRADTSRGP--CSGRTIVDLLRITEPGKDSREWNCDVATKADVEKVWDFIFDAI 402
            L+M PLELTHT+  T E+ ++L +   D+P F S+L  LL FF  TY+ VF++ +PPLHDP AV  V    L  E    L+  D  R    C GRT+ DL  +       +E NC VA K  VE+ W  + DAI
Sbjct:  196 LVMVPLELTHTVCVTPEISERLRSL--DSP-FSSMLNHLLQFFVSTYKQVFQLDSPPLHDPCAVAYVADRDLFEEK---LMHVDIERTSEFCQGRTVCDLYDMHR-----KEKNCVVAMKIKVEQFWKMMLDAI 318          
BLAST of mRNA_M-pyrifera_M_contig88278.20505.1 vs. uniprot
Match: A0A7S2TQJ7_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TQJ7_9EUKA)

HSP 1 Score: 85.1 bits (209), Expect = 1.330e-17
Identity = 54/134 (40.30%), Postives = 74/134 (55.22%), Query Frame = 1
Query:   13 MSPLELTHTILCTDEVMKKLETALKDAPSFLSLLTTLLSFFADTYRDVFRIPAPPLHDPMAVVRVVAPHLITESAPCLVRADTSRGP--CSGRTIVDLLRITEPGKDSREW--NCDVATKADVEKVWDFIFDAI 402
            M PLE+THT L T+ VMK++   L     F  +   LLSFF DTY+ VF   +PP+HDP AV  ++ P + T      +R D   G   C+G+T+ D+       KDS +   N  VA K DV+K WD + DA+
Sbjct:   86 MVPLEVTHTALATESVMKRV---LDLKSPFAKMSVDLLSFFKDTYKRVFDFDSPPVHDPCAVAYIINPSIFTVKH---LRVDVIYGEHRCAGQTVCDIW------KDSSDLPPNVHVAVKMDVDKFWDLLIDAL 207          
BLAST of mRNA_M-pyrifera_M_contig88278.20505.1 vs. uniprot
Match: A0A2V0NND0_9CHLO (N-D-ribosylpurine ribohydrolase n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NND0_9CHLO)

HSP 1 Score: 85.9 bits (211), Expect = 3.030e-17
Identity = 54/134 (40.30%), Postives = 74/134 (55.22%), Query Frame = 1
Query:    1 VPLLMSPLELTHTILCTDEVMKKLETALKDAPSFLSLLTTLLSFFADTYRDVFRIPAPPLHDPMAVVRVVAPHLITESAPCLVRADTSRGPCSGRTIVDLLRITEPGKDSREWNCDVATKADVEKVWDFIFDAI 402
            VPL M P+E+THT L T EV+ +L ++      F +L+  LL+FFA TYR+VF+  A PLHDP AV  V AP +  E     V  +T     +G+T+ D+   T      R  NC VA   DV+  WD +  A+
Sbjct:  212 VPLQMVPIEVTHTALATPEVLGRLLSSHAGISKFKALVGQLLTFFAATYREVFKFEAAPLHDPCAVALVAAPSIF-EVEEMRVDIETISPLSAGQTVCDVWHQT-----GRPKNCAVARAMDVDAFWDILIAAL 339          
BLAST of mRNA_M-pyrifera_M_contig88278.20505.1 vs. uniprot
Match: A0A6L6CXM9_9ACTN (Pyrimidine-specific ribonucleoside hydrolase RihA n=2 Tax=root TaxID=1 RepID=A0A6L6CXM9_9ACTN)

HSP 1 Score: 85.1 bits (209), Expect = 3.900e-17
Identity = 54/136 (39.71%), Postives = 74/136 (54.41%), Query Frame = 1
Query:    4 PLLMSPLELTHTILCTDEVM---KKLETALKDAPSFLSLLTTLLSFFADTYRDVFRIPAPPLHDPMAVVRVVAPHLITESAPCLVRADTSRGPCSGRTIVDLLRITEPGKDSREWNCDVATKADVEKVWDFIFDAI 402
            PL+MS L +TH  L T EV+    KL+T L         +  LL FFADTYRDVF +P PP+HDP+A+  ++    + +     V  + +     G T+VDL      G   ++ N DVA + DVEK WD + DAI
Sbjct:  182 PLIMSGLNITHQALATSEVLDRISKLDTKLSHT------IVDLLKFFADTYRDVFGMPDPPVHDPVALA-IIIDMTVAKLVSAPVSVELTGELTRGATVVDLH-----GTTGQKANVDVAMELDVEKFWDMVIDAI 305          
BLAST of mRNA_M-pyrifera_M_contig88278.20505.1 vs. uniprot
Match: A0A0D2MSQ4_9CHLO (Purine nucleosidase n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2MSQ4_9CHLO)

HSP 1 Score: 85.9 bits (211), Expect = 4.090e-17
Identity = 53/133 (39.85%), Postives = 71/133 (53.38%), Query Frame = 1
Query:    4 PLLMSPLELTHTILCTDEVMKKLETALKDAPSFLSLLTTLLSFFADTYRDVFRIPAPPLHDPMAVVRVVAPHLITESAPCLVRADTSRGPCSGRTIVDLLRITEPGKDSREWNCDVATKADVEKVWDFIFDAI 402
            PL M P+E+THT L T EV+ +L T+      F  L+  LL+FFA TYR+VF+   PPLHDP AV  V  P +  E     V  +T+    +G+T+ D+   T      R  NC VA   DV   W  + DA+
Sbjct:  253 PLTMVPIEVTHTALVTPEVLGRLLTSRPGISKFKVLIEQLLTFFAGTYREVFKFTDPPLHDPCAVAYVADPSIF-EVEEMRVDIETASPLSAGQTVCDVWHQT-----GRPKNCRVARSMDVNAFWGIMIDAL 379          
BLAST of mRNA_M-pyrifera_M_contig88278.20505.1 vs. uniprot
Match: A4F931_SACEN (Purine nucleosidase/pyrimidine-specific ribonucleoside hydrolase n=2 Tax=Saccharopolyspora erythraea TaxID=1836 RepID=A4F931_SACEN)

HSP 1 Score: 84.3 bits (207), Expect = 7.550e-17
Identity = 57/133 (42.86%), Postives = 76/133 (57.14%), Query Frame = 1
Query:    4 PLLMSPLELTHTILCTDEVMKKLETALKDAPSFLSLLTTLLSFFADTYRDVFRIPAPPLHDPMAVVRVVAPHLITESAPCLVRADTSRGPCSGRTIVDLLRITEPGKDSREWNCDVATKADVEKVWDFIFDAI 402
            PL M  L++TH  L T  V+++L  AL      +S+   L+ FFA TYR++F    PPLHDP+AV RVV P L+  +A   V  +T     +G T+VDL R T      RE N DVA + DVE+ WD +  AI
Sbjct:  183 PLTMCGLDVTHQALVTPAVVERLR-ALGTPVGDMSV--ELMRFFATTYRELFGFEGPPLHDPVAVARVVDPTLV-RTARVNVEIETRGDWTAGATVVDLARRT-----GREANADVALELDVERFWDLVVGAI 306          
BLAST of mRNA_M-pyrifera_M_contig88278.20505.1 vs. uniprot
Match: A0A7S1HWN0_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1HWN0_9EUGL)

HSP 1 Score: 84.3 bits (207), Expect = 1.010e-16
Identity = 52/135 (38.52%), Postives = 72/135 (53.33%), Query Frame = 1
Query:    1 VPLLMSPLELTHTILCTDEVMKKLETALKDAPSFLSLLTTLLSFFADTYRDVFRIPAPPLHDPMAVVRVVAPHLITESAPCLVRADTS-RGPCSGRTIVDLLRITEPGKDSREWNCDVATKADVEKVWDFIFDAI 402
            V ++M PLE+THT L T  V++++ +       F  ++T LL FF DTY+ VF   +PPLHDP AV  V+AP L       L+R D    G C+G+T+ D+   +   K     N  VATK DV   WD     +
Sbjct:  199 VKVVMVPLEVTHTALATPSVLQRINSL---QTPFARMITDLLLFFKDTYKQVFGFESPPLHDPCAVAYVIAPELFETK---LLRVDVECSGLCTGQTVCDVWHDSSQPK-----NVHVATKLDVPSFWDLFLRVV 322          
BLAST of mRNA_M-pyrifera_M_contig88278.20505.1 vs. uniprot
Match: A0A5J4XSK6_9CHLO (Purine nucleosidase n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XSK6_9CHLO)

HSP 1 Score: 83.6 bits (205), Expect = 2.260e-16
Identity = 50/135 (37.04%), Postives = 75/135 (55.56%), Query Frame = 1
Query:    4 PLLMSPLELTHTILCTDEVMKKLETALKDAPSFLSLLTTLLSFFADTYRDVFRIPAPPLHDPMAVVRVVAPHLITESAPCLVRAD--TSRGPCSGRTIVDLLRITEPGKDSREWNCDVATKADVEKVWDFIFDAI 402
            P++M P+ELTHT L T +V+ ++   L     FL L+  LL +FA++Y+ VF+   PPLHDP AV  V+AP +       L+R D  T     +G+T+ D+       + S+  N  VA   DV K WD + +A+
Sbjct:  218 PVVMLPIELTHTALVTPDVLHRISAELVGNTPFLHLVKQLLLYFAESYKSVFKFDNPPLHDPCAVAYVIAPEMFQVE---LMRVDIETVSELSAGQTVCDVWH-----QSSKPKNVSVAQSMDVSKFWDLMINAL 344          
BLAST of mRNA_M-pyrifera_M_contig88278.20505.1 vs. uniprot
Match: A0A401Z8Q7_9CHLR (Ribosylpyrimidine nucleosidase n=1 Tax=Dictyobacter aurantiacus TaxID=1936993 RepID=A0A401Z8Q7_9CHLR)

HSP 1 Score: 82.8 bits (203), Expect = 2.820e-16
Identity = 49/133 (36.84%), Postives = 72/133 (54.14%), Query Frame = 1
Query:    4 PLLMSPLELTHTILCTDEVMKKLETALKDAPSFLSLLTTLLSFFADTYRDVFRIPAPPLHDPMAVVRVVAPHLITESAPCLVRADTSRGPCSGRTIVDLLRITEPGKDSREWNCDVATKADVEKVWDFIFDAI 402
            P+ M PLE+TH  L T+E++ +L    +  P+F++    LL +FAD+YR VF  PAPPLHDP AV  V+ P +I  +    V  +T      GRT+ D+   T    ++R     V     V++ WD + D I
Sbjct:  183 PITMIPLEVTHQALATEEIIGRLRAMQRPVPTFVA---DLLHYFADSYRQVFGFPAPPLHDPCAVAAVIEPDIIL-AKEMHVEIETQGAWTVGRTVCDIYAKTGLAANAR-----VGYALQVDRFWDLLLDTI 306          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig88278.20505.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A061SMB8_9CHLO3.880e-1939.85Purine nucleosidase n=2 Tax=Tetraselmis sp. GSL018... [more]
A0A816RAU2_9BILA3.540e-1842.54Hypothetical protein n=3 Tax=Rotaria TaxID=231623 ... [more]
A0A7S2TQJ7_9EUKA1.330e-1740.30Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
A0A2V0NND0_9CHLO3.030e-1740.30N-D-ribosylpurine ribohydrolase n=1 Tax=Raphidocel... [more]
A0A6L6CXM9_9ACTN3.900e-1739.71Pyrimidine-specific ribonucleoside hydrolase RihA ... [more]
A0A0D2MSQ4_9CHLO4.090e-1739.85Purine nucleosidase n=1 Tax=Monoraphidium neglectu... [more]
A4F931_SACEN7.550e-1742.86Purine nucleosidase/pyrimidine-specific ribonucleo... [more]
A0A7S1HWN0_9EUGL1.010e-1638.52Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A5J4XSK6_9CHLO2.260e-1637.04Purine nucleosidase n=1 Tax=Trebouxia sp. A1-2 Tax... [more]
A0A401Z8Q7_9CHLR2.820e-1636.84Ribosylpyrimidine nucleosidase n=1 Tax=Dictyobacte... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig88278contigM-pyrifera_M_contig88278:380..781 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score82.0
Seed ortholog evalue2.2e-13
Seed eggNOG ortholog405948.SACE_1231
Preferred nameybeK
KEGG rclassRC00033,RC00063,RC00122,RC00318,RC00485
KEGG koko:K01239,ko:K01250
KEGG ReactionR01245,R01273,R01677,R01770,R02143
KEGG Pathwayko00230,ko00760,ko01100,map00230,map00760,map01100
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Inosine-uridine preferring nucleoside hydrolase
EggNOG OGs2GP6N@201174,4E1GE@85010,COG1957@1,COG1957@2
EC3.2.2.1
COG Functional cat.F
Best tax levelPseudonocardiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size402
Cds size390
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816792.431987-CDS-M-pyrifera_M_contig88278:379..7691622816792.431987-CDS-M-pyrifera_M_contig88278:379..769Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88278 380..769 -
1692278181.2165926-CDS-M-pyrifera_M_contig88278:379..7691692278181.2165926-CDS-M-pyrifera_M_contig88278:379..769Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88278 380..769 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816792.4430873-UTR-M-pyrifera_M_contig88278:769..7811622816792.4430873-UTR-M-pyrifera_M_contig88278:769..781Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig88278 770..781 -
1692278181.2309573-UTR-M-pyrifera_M_contig88278:769..7811692278181.2309573-UTR-M-pyrifera_M_contig88278:769..781Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig88278 770..781 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig88278.20505.1prot_M-pyrifera_M_contig88278.20505.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig88278 380..769 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig88278.20505.1

>prot_M-pyrifera_M_contig88278.20505.1 ID=prot_M-pyrifera_M_contig88278.20505.1|Name=mRNA_M-pyrifera_M_contig88278.20505.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=130bp
MSPLELTHTILCTDEVMKKLETALKDAPSFLSLLTTLLSFFADTYRDVFR
IPAPPLHDPMAVVRVVAPHLITESAPCLVRADTSRGPCSGRTIVDLLRIT
EPGKDSREWNCDVATKADVEKVWDFIFDAI
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mRNA from alignment at M-pyrifera_M_contig88278:380..781-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig88278.20505.1 ID=mRNA_M-pyrifera_M_contig88278.20505.1|Name=mRNA_M-pyrifera_M_contig88278.20505.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=402bp|location=Sequence derived from alignment at M-pyrifera_M_contig88278:380..781- (Macrocystis pyrifera P11B4 male)
GTGCCGCTACTTATGAGTCCACTGGAGCTTACACACACAATCCTGTGCAC CGATGAAGTGATGAAAAAACTGGAGACAGCGCTCAAAGATGCACCATCAT TCCTCTCTCTCCTCACCACCCTGCTCTCCTTCTTTGCCGATACGTATCGT GATGTTTTTCGCATCCCAGCACCACCTCTCCATGACCCAATGGCTGTGGT TCGTGTCGTAGCTCCACATCTCATTACTGAATCCGCCCCGTGTCTTGTTC GTGCTGACACATCGAGAGGACCTTGCAGCGGAAGAACTATCGTTGATCTT CTTCGAATCACAGAACCTGGCAAAGATTCGAGGGAGTGGAATTGTGATGT TGCTACAAAAGCAGACGTTGAGAAAGTTTGGGATTTCATCTTTGATGCCA TC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig88278:380..781-

>mRNA_M-pyrifera_M_contig88278.20505.1 ID=mRNA_M-pyrifera_M_contig88278.20505.1|Name=mRNA_M-pyrifera_M_contig88278.20505.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=780bp|location=Sequence derived from alignment at M-pyrifera_M_contig88278:380..781- (Macrocystis pyrifera P11B4 male)
ATGAGTCCACTGGAGCTTACACACACAATCCTGTGCACCGATGAAGTGAT
GAAAAAACTGGAGACAGCGCTCAAAGATGCACCATCATTCCTCTCTCTCC
TCACCACCCTGCTCTCCTTCTTTGCCGATACGTATCGTGATGTTTTTCGC
ATCCCAGCACCACCTCTCCATGACCCAATGGCTGTGGTTCGTGTCGTAGC
TCCACATCTCATTACTGAATCCGCCCCGTGTCTTGTTCGTGCTGACACAT
CGAGAGGACCTTGCAGCGGAAGAACTATCGTTGATCTTCTTCGAATCACA
GAACCTGGCAAAGATTCGAGGGAGTGGAATTGTGATGTTGCTACAAAAGC
AGACGTTGAGAAAGTTTGGGATTTCATCTTTGATGCCATCATGAGTCCAC
TGGAGCTTACACACACAATCCTGTGCACCGATGAAGTGATGAAAAAACTG
GAGACAGCGCTCAAAGATGCACCATCATTCCTCTCTCTCCTCACCACCCT
GCTCTCCTTCTTTGCCGATACGTATCGTGATGTTTTTCGCATCCCAGCAC
CACCTCTCCATGACCCAATGGCTGTGGTTCGTGTCGTAGCTCCACATCTC
ATTACTGAATCCGCCCCGTGTCTTGTTCGTGCTGACACATCGAGAGGACC
TTGCAGCGGAAGAACTATCGTTGATCTTCTTCGAATCACAGAACCTGGCA
AAGATTCGAGGGAGTGGAATTGTGATGTTGCTACAAAAGCAGACGTTGAG
AAAGTTTGGGATTTCATCTTTGATGCCATC
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