mRNA_M-pyrifera_M_contig88277.20504.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig88277.20504.1
Unique NamemRNA_M-pyrifera_M_contig88277.20504.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig88277.20504.1 vs. uniprot
Match: A0A2D5B1E5_9BACT (Transpeptidase domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2D5B1E5_9BACT)

HSP 1 Score: 127 bits (320), Expect = 8.230e-30
Identity = 86/260 (33.08%), Postives = 129/260 (49.62%), Query Frame = 1
Query:    1 LWWKPREVLSEAERERHFERVGPSSWTRFLTRGIYTARHGNPREQGERLRYDAKLAGE---EVWTALLPEVHNVPLERITPTQAMAVQAALSDEMVSRDHMRLVLVHDREHPVGEFPTLGSWGFTRDGQERPDAYVGLELRAQELAAEHAALWASTAPATYEWVAGRVSRRGATPYFQGSADAAPPIVVETTIDTVLQRRTREALEDAVERHDATLAMAIVVEVRSGEVLALDAVSTLPTRAFLPVAHLFTPGSTFKLVT 771
            L+W+P+ +L+  +RE    R    SW R L  G+       P E    +  + +   +   EVW AL P     P+  I+P   +A++  L  + V    MR+V    R +P G+    GSWGFT   +       GLEL   ++ A          P  Y W + R  R      +     A+ P  VET++D  LQR  R+AL++ ++ H+  +AMA+VV+V+SG+VLA++ V     + F P+ H FT GSTFKLVT
Sbjct:  169 LFWRPKALLARRQREALGARSA-LSWARKLADGLACCLC-EPEEALVFVDLEDRAKEKIRREVWKALCPTAETCPVRDISPRAMVALRNELESQSVLPWQMRIVYDRKRVYPAGKHELFGSWGFTDPEETSARPRAGLELLCDQVLASGRWPVPEPIPEIYVWRSDRTVRGRRANGYVSFVPASTPPCVETSLDLSLQRFVRDALDELMQTHEPAIAMALVVDVQSGDVLAVEGVEAYEIQPFTPLFHQFTVGSTFKLVT 426          
BLAST of mRNA_M-pyrifera_M_contig88277.20504.1 vs. uniprot
Match: A0A7C2BBQ2_9BACT (Transpeptidase domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7C2BBQ2_9BACT)

HSP 1 Score: 111 bits (278), Expect = 3.180e-24
Identity = 93/265 (35.09%), Postives = 125/265 (47.17%), Query Frame = 1
Query:    1 LWWKPREVLSEAERERHFERVGPSSWT--RFLTRGIYTARH--GNPREQGERLRYDAKLAGEEVWTALLPEVHNVPLERITPTQAMAVQAALSDEMVSRDHMRLVLVHDREHPVGEFPTLGSWGFTRDGQERPDAYVGLELRAQ-ELAAEHAALWAST---APATYEWVAGRVSRRGATPYFQGSADAAPPIVVETTIDTVLQRRTREALEDAVERHDATLAMAIVVEVRSGEVLALDAVSTLPTRAFLPVAHLFTPGSTFKLVT 771
            L W+P EVLS   R+    R   S+W+  R    GI  A      P   G   R DA    EE+W+AL+P V +  +  I   +  AV+  L+ E VS   MRL    DR  P G    LG WG+  +         GLEL A+ EL  +   +W      +   Y W+A R  R    P +      A P  V  T+D  LQ      LE  V  H+  +A AIV++V +G+VLA+D+V   P   F P+ H+FT GST K+VT
Sbjct:  166 LIWRPLEVLSLETRK---GRGMSSAWSFGRHFANGIAAALRDPSEPEPVGGPQR-DAMR--EEIWSALIPCVWSRAIRGIGVERVAAVRDLLASEGVSSWQMRLGFGRDRVWPTGRPELLGDWGYRDESDTEAVPRTGLELLARRELDRD---VWRERLDFSVPVYHWLADRTVRGSREPGYLAFEHPAQPPTVVATLDISLQAFLHAELERLVAEHEPAVAEAIVLDVDTGDVLAVDSVERYPLAPFAPIYHVFTTGSTMKVVT 421          
BLAST of mRNA_M-pyrifera_M_contig88277.20504.1 vs. uniprot
Match: A0A521K9X0_9BACT (Transpeptidase domain-containing protein (Fragment) n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A521K9X0_9BACT)

HSP 1 Score: 80.1 bits (196), Expect = 1.480e-13
Identity = 45/88 (51.14%), Postives = 56/88 (63.64%), Query Frame = 1
Query:  508 ATPYFQGSADAAPPIVVETTIDTVLQRRTREALEDAVERHDATLAMAIVVEVRSGEVLALDAVSTLPTRAFLPVAHLFTPGSTFKLVT 771
            A PYF  +    PP  V TTID  +QR    ALE A+++H   LAMAI +++ SG+VLALD VS      FLP+ H FTPGSTFK+ T
Sbjct:    3 ARPYFLHAEAGDPPARVRTTIDLDVQRVMHTALEAALDKHAPALAMAIAMDLESGDVLALDGVSRYGFANFLPLHHNFTPGSTFKVTT 90          
BLAST of mRNA_M-pyrifera_M_contig88277.20504.1 vs. uniprot
Match: A0A523PVA3_9BACT (Transpeptidase domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A523PVA3_9BACT)

HSP 1 Score: 80.1 bits (196), Expect = 2.120e-13
Identity = 43/84 (51.19%), Postives = 51/84 (60.71%), Query Frame = 1
Query:  517 YFQGSADAAPPIVVETTIDTVLQRRTREALEDAVERHDATLAMAIVVEVRSGEVLALDAVSTLPTRAFLPVAHLFTPGSTFKLV 768
            YFQ + DAA    V TTID  LQR     LE  +  HD  LAMAIV+EV SG+VLA+D +    T  F P+ H FTPGST K +
Sbjct:  413 YFQSATDAAEVPRVITTIDAELQRAVHRELEGVMATHDPALAMAIVLEVESGDVLAVDGIHAYGTSGFAPLLHRFTPGSTMKAI 496          
BLAST of mRNA_M-pyrifera_M_contig88277.20504.1 vs. uniprot
Match: A0A2D5WAZ6_9BACT (Transpeptidase domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2D5WAZ6_9BACT)

HSP 1 Score: 76.3 bits (186), Expect = 4.330e-12
Identity = 43/84 (51.19%), Postives = 52/84 (61.90%), Query Frame = 1
Query:  517 YFQGSADAAPPIVVETTIDTVLQRRTREALEDAVERHDATLAMAIVVEVRSGEVLALDAVSTLPTRAFLPVAHLFTPGSTFKLV 768
            YF GS  AA   +V +TID+ LQ   R  LE     HD  LAMAIV+EV SG VLA++A S  P   F P+ H FTPGST K++
Sbjct:  412 YFLGSVLAAEAPLVMSTIDSHLQVHVRSVLEQLSIEHDPALAMAIVIEVESGNVLAMEASSPYPLGGFAPLQHTFTPGSTAKVL 495          
BLAST of mRNA_M-pyrifera_M_contig88277.20504.1 vs. uniprot
Match: A0A7Y5Q0D3_9PLAN (Transpeptidase domain-containing protein (Fragment) n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A7Y5Q0D3_9PLAN)

HSP 1 Score: 71.6 bits (174), Expect = 1.550e-10
Identity = 38/83 (45.78%), Postives = 56/83 (67.47%), Query Frame = 1
Query:  517 YFQGSADAAPPIVVETTIDTVLQRRTREALEDAVERHDATLAMAIVVEVRSGEVLALDAVSTLPTRAFLPVAHLFTPGSTFKL 765
            +   +A + PP VV TT D +LQR+   ALE+ +E+H   LAMAI +++ SG+VLA+D+ +  P   F P+ + FTPGSTFK+
Sbjct:  412 FLSSNAPSDPPRVV-TTFDLMLQRQVGIALEELMEKHRPALAMAIALDLASGDVLAVDSRTAYPLLGFAPLGYEFTPGSTFKV 493          
BLAST of mRNA_M-pyrifera_M_contig88277.20504.1 vs. uniprot
Match: A0A800G1J2_9BACT (Transpeptidase domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A800G1J2_9BACT)

HSP 1 Score: 70.1 bits (170), Expect = 5.210e-10
Identity = 53/137 (38.69%), Postives = 66/137 (48.18%), Query Frame = 1
Query:  385 PDAYVGLELRAQELAAEHAALWASTAPATYEWVAGRVSRRGATPYFQGSADAAP-----------PIVVETTIDTVLQRRTREALEDAVERHDATLAMAIVVEVRSGEVLALDAVSTLPTRAFLPVAHLFTPGSTFK 762
            P   +GLEL A++  A+    WA   P+T +    RV  R     +     A P           P+ VETT+D  LQ      L  AV R  A LAM IV++  SGEVLA+DAV       F P+ H FTPGST K
Sbjct:  377 PRPMLGLELLARDYLAQEP--WAQARPSTMK-ARPRVLPRDRRNRWANLGRAIPSDLLSAQGGSFPVEVETTLDAPLQLYLHYQLSQAVTRQGAALAMGIVLDTTSGEVLAVDAVHAYRISGFAPLQHTFTPGSTTK 510          
BLAST of mRNA_M-pyrifera_M_contig88277.20504.1 vs. uniprot
Match: A0A2D6QD61_9ARCH (Transpeptidase domain-containing protein n=1 Tax=Candidatus Woesearchaeota archaeon TaxID=2026803 RepID=A0A2D6QD61_9ARCH)

HSP 1 Score: 66.6 bits (161), Expect = 5.880e-9
Identity = 37/79 (46.84%), Postives = 46/79 (58.23%), Query Frame = 1
Query:  526 GSADAAPPIVVETTIDTVLQRRTREALEDAVERHDATLAMAIVVEVRSGEVLALDAVSTLPTRAFLPVAHLFTPGSTFK 762
            G+   + P+ VETT+D  LQ      L + V R  A LAM IV++  SGEVLA+DAV       F P+ H FTPGST K
Sbjct:   15 GAEGGSLPVEVETTLDAPLQVYLHHQLNETVIRQGAVLAMGIVLDTTSGEVLAVDAVHAYRISGFAPLRHTFTPGSTTK 93          
BLAST of mRNA_M-pyrifera_M_contig88277.20504.1 vs. uniprot
Match: A0A2E6D683_9BACT (Transpeptidase domain-containing protein n=2 Tax=Planctomycetes TaxID=203682 RepID=A0A2E6D683_9BACT)

HSP 1 Score: 65.9 bits (159), Expect = 1.390e-8
Identity = 37/79 (46.84%), Postives = 46/79 (58.23%), Query Frame = 1
Query:  526 GSADAAPPIVVETTIDTVLQRRTREALEDAVERHDATLAMAIVVEVRSGEVLALDAVSTLPTRAFLPVAHLFTPGSTFK 762
            G+   + P+ VETT+D  LQ      L + V R  A LAM IV++  SGEVLA+DAV       F P+ H FTPGST K
Sbjct:  460 GAEGGSLPVEVETTLDAPLQVYLHGQLNETVIRQGAVLAMGIVLDTTSGEVLAVDAVHAYRISGFAPLRHTFTPGSTTK 538          
BLAST of mRNA_M-pyrifera_M_contig88277.20504.1 vs. uniprot
Match: A0A800JQ16_9BACT (Transpeptidase domain-containing protein (Fragment) n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A800JQ16_9BACT)

HSP 1 Score: 63.2 bits (152), Expect = 1.040e-7
Identity = 58/161 (36.02%), Postives = 74/161 (45.96%), Query Frame = 1
Query:  340 PTLGSWGFTRD--GQERPDA------YVGLELRAQELAAE-----------HAALWASTAPATYEWVAGRVSRRGATPYF-QGSADAAPPIVVETTIDTVLQRRTREALEDAVERHDATLAMAIVVEVRSGEVLALDAVSTLPTRAFLPVAHLFTPGSTFK 762
            P+   WG   D  G  R D       + GLE  A +L A+              LW + + A   W A R    G   YF + SA  APP VV +T+   LQ+     L   + R +A  AMAIVVEV SG+VLA+ + S      F P  +LFTPGS  K
Sbjct:  367 PSALDWGAPADPLGARRDDLANNARPWSGLEYLAGKLLAQPLWQDRIQQEGRIYLWQNRSVARDRWRAWR-GEGGLPNYFLEASAAIAPPAVV-STLRVDLQQAMHRVLAAILARTEAASAMAIVVEVESGDVLAVGSKSRYAVSGFAPTQYLFTPGSILK 525          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig88277.20504.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A2D5B1E5_9BACT8.230e-3033.08Transpeptidase domain-containing protein n=1 Tax=P... [more]
A0A7C2BBQ2_9BACT3.180e-2435.09Transpeptidase domain-containing protein n=1 Tax=P... [more]
A0A521K9X0_9BACT1.480e-1351.14Transpeptidase domain-containing protein (Fragment... [more]
A0A523PVA3_9BACT2.120e-1351.19Transpeptidase domain-containing protein n=1 Tax=P... [more]
A0A2D5WAZ6_9BACT4.330e-1251.19Transpeptidase domain-containing protein n=1 Tax=P... [more]
A0A7Y5Q0D3_9PLAN1.550e-1045.78Transpeptidase domain-containing protein (Fragment... [more]
A0A800G1J2_9BACT5.210e-1038.69Transpeptidase domain-containing protein n=1 Tax=P... [more]
A0A2D6QD61_9ARCH5.880e-946.84Transpeptidase domain-containing protein n=1 Tax=C... [more]
A0A2E6D683_9BACT1.390e-846.84Transpeptidase domain-containing protein n=2 Tax=P... [more]
A0A800JQ16_9BACT1.040e-736.02Transpeptidase domain-containing protein (Fragment... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig88277contigM-pyrifera_M_contig88277:50..820 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size771
Cds size771
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816792.3970735-CDS-M-pyrifera_M_contig88277:49..8201622816792.3970735-CDS-M-pyrifera_M_contig88277:49..820Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88277 50..820 +
1692278181.1985326-CDS-M-pyrifera_M_contig88277:49..8201692278181.1985326-CDS-M-pyrifera_M_contig88277:49..820Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88277 50..820 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig88277.20504.1prot_M-pyrifera_M_contig88277.20504.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig88277 50..820 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig88277.20504.1

>prot_M-pyrifera_M_contig88277.20504.1 ID=prot_M-pyrifera_M_contig88277.20504.1|Name=mRNA_M-pyrifera_M_contig88277.20504.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=257bp
LWWKPREVLSEAERERHFERVGPSSWTRFLTRGIYTARHGNPREQGERLR
YDAKLAGEEVWTALLPEVHNVPLERITPTQAMAVQAALSDEMVSRDHMRL
VLVHDREHPVGEFPTLGSWGFTRDGQERPDAYVGLELRAQELAAEHAALW
ASTAPATYEWVAGRVSRRGATPYFQGSADAAPPIVVETTIDTVLQRRTRE
ALEDAVERHDATLAMAIVVEVRSGEVLALDAVSTLPTRAFLPVAHLFTPG
STFKLVT
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mRNA from alignment at M-pyrifera_M_contig88277:50..820+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig88277.20504.1 ID=mRNA_M-pyrifera_M_contig88277.20504.1|Name=mRNA_M-pyrifera_M_contig88277.20504.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=771bp|location=Sequence derived from alignment at M-pyrifera_M_contig88277:50..820+ (Macrocystis pyrifera P11B4 male)
CTGTGGTGGAAGCCGCGCGAGGTGTTGAGCGAGGCGGAGCGCGAGCGCCA CTTCGAGCGCGTCGGACCGTCGTCGTGGACGCGCTTCCTGACGCGCGGGA TCTACACCGCGCGCCATGGCAACCCGCGCGAGCAGGGCGAGCGGCTGCGC TACGACGCCAAGCTCGCCGGCGAGGAGGTCTGGACGGCGCTCCTGCCCGA GGTCCACAACGTGCCGCTCGAGCGCATCACGCCGACCCAAGCGATGGCCG TGCAGGCTGCGCTCTCGGACGAGATGGTCAGCCGCGACCACATGCGGCTC GTCCTGGTGCACGACCGCGAACACCCCGTCGGCGAGTTTCCGACGTTGGG CAGCTGGGGCTTCACCCGCGACGGCCAGGAGCGGCCGGACGCCTACGTCG GGCTCGAGTTGCGCGCCCAGGAGCTGGCCGCGGAGCACGCCGCGCTGTGG GCGTCGACCGCGCCGGCCACCTATGAATGGGTGGCGGGCCGCGTCTCGCG CCGCGGCGCGACGCCGTACTTCCAAGGCTCGGCCGACGCCGCGCCGCCGA TCGTCGTCGAGACGACCATCGACACCGTGCTGCAGCGCCGCACCCGCGAA GCCCTCGAGGACGCGGTCGAGCGCCACGACGCAACGCTCGCGATGGCGAT CGTCGTGGAGGTGCGGTCCGGCGAGGTGCTGGCGCTCGACGCGGTCTCGA CTTTGCCGACGCGCGCCTTCCTGCCCGTCGCGCACCTGTTCACGCCCGGC TCGACCTTCAAGCTCGTGACG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig88277:50..820+

>mRNA_M-pyrifera_M_contig88277.20504.1 ID=mRNA_M-pyrifera_M_contig88277.20504.1|Name=mRNA_M-pyrifera_M_contig88277.20504.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1542bp|location=Sequence derived from alignment at M-pyrifera_M_contig88277:50..820+ (Macrocystis pyrifera P11B4 male)
CTGTGGTGGAAGCCGCGCGAGGTGTTGAGCGAGGCGGAGCGCGAGCGCCA
CTTCGAGCGCGTCGGACCGTCGTCGTGGACGCGCTTCCTGACGCGCGGGA
TCTACACCGCGCGCCATGGCAACCCGCGCGAGCAGGGCGAGCGGCTGCGC
TACGACGCCAAGCTCGCCGGCGAGGAGGTCTGGACGGCGCTCCTGCCCGA
GGTCCACAACGTGCCGCTCGAGCGCATCACGCCGACCCAAGCGATGGCCG
TGCAGGCTGCGCTCTCGGACGAGATGGTCAGCCGCGACCACATGCGGCTC
GTCCTGGTGCACGACCGCGAACACCCCGTCGGCGAGTTTCCGACGTTGGG
CAGCTGGGGCTTCACCCGCGACGGCCAGGAGCGGCCGGACGCCTACGTCG
GGCTCGAGTTGCGCGCCCAGGAGCTGGCCGCGGAGCACGCCGCGCTGTGG
GCGTCGACCGCGCCGGCCACCTATGAATGGGTGGCGGGCCGCGTCTCGCG
CCGCGGCGCGACGCCGTACTTCCAAGGCTCGGCCGACGCCGCGCCGCCGA
TCGTCGTCGAGACGACCATCGACACCGTGCTGCAGCGCCGCACCCGCGAA
GCCCTCGAGGACGCGGTCGAGCGCCACGACGCAACGCTCGCGATGGCGAT
CGTCGTGGAGGTGCGGTCCGGCGAGGTGCTGGCGCTCGACGCGGTCTCGA
CTTTGCCGACGCGCGCCTTCCTGCCCGTCGCGCACCTGTTCACGCCCGGC
TCGACCTTCAAGCTCGTGACGCTGTGGTGGAAGCCGCGCGAGGTGTTGAG
CGAGGCGGAGCGCGAGCGCCACTTCGAGCGCGTCGGACCGTCGTCGTGGA
CGCGCTTCCTGACGCGCGGGATCTACACCGCGCGCCATGGCAACCCGCGC
GAGCAGGGCGAGCGGCTGCGCTACGACGCCAAGCTCGCCGGCGAGGAGGT
CTGGACGGCGCTCCTGCCCGAGGTCCACAACGTGCCGCTCGAGCGCATCA
CGCCGACCCAAGCGATGGCCGTGCAGGCTGCGCTCTCGGACGAGATGGTC
AGCCGCGACCACATGCGGCTCGTCCTGGTGCACGACCGCGAACACCCCGT
CGGCGAGTTTCCGACGTTGGGCAGCTGGGGCTTCACCCGCGACGGCCAGG
AGCGGCCGGACGCCTACGTCGGGCTCGAGTTGCGCGCCCAGGAGCTGGCC
GCGGAGCACGCCGCGCTGTGGGCGTCGACCGCGCCGGCCACCTATGAATG
GGTGGCGGGCCGCGTCTCGCGCCGCGGCGCGACGCCGTACTTCCAAGGCT
CGGCCGACGCCGCGCCGCCGATCGTCGTCGAGACGACCATCGACACCGTG
CTGCAGCGCCGCACCCGCGAAGCCCTCGAGGACGCGGTCGAGCGCCACGA
CGCAACGCTCGCGATGGCGATCGTCGTGGAGGTGCGGTCCGGCGAGGTGC
TGGCGCTCGACGCGGTCTCGACTTTGCCGACGCGCGCCTTCCTGCCCGTC
GCGCACCTGTTCACGCCCGGCTCGACCTTCAAGCTCGTGACG
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