mRNA_M-pyrifera_M_contig88274.20502.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig88274.20502.1
Unique NamemRNA_M-pyrifera_M_contig88274.20502.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig88274.20502.1 vs. uniprot
Match: A0A5A8E2Y0_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E2Y0_CAFRO)

HSP 1 Score: 128 bits (321), Expect = 7.350e-34
Identity = 71/158 (44.94%), Postives = 97/158 (61.39%), Query Frame = 1
Query:    4 SDLMLAEKALESVPTDV---HASPESVRTLNLSGNALRSLAGLSAYSNLETLVLXXXXXXXXXXXXXXXXXXXLWFNTNAVEDMVEFLGEVVAAFPRLSFLSMMNNPASPSLVCMSEEDIKAQERHRLYVIYRVPTLEFLDAGPVSAEERASARERGR 468
            + ++LA + L ++P D    HA    V +L+L+ NAL  L+GL  +S L+TL+L                   L FN NAVEDM  FL   + A P ++FLS+M NPASP ++ +SEED+ A  RHRLYV+YRVP+L FLDA PV+A ERA A  +G+
Sbjct:   24 ASIVLAGQGLSAIPVDALRDHAP--HVTSLDLTDNALMDLSGLELFSALDTLILDKNGLSSLEGAPKLPSVKTLSFNNNAVEDMTSFLDSALEAVPAVTFLSVMRNPASPPMIQLSEEDVAAATRHRLYVVYRVPSLTFLDAAPVTAAERAEAASKGK 179          
BLAST of mRNA_M-pyrifera_M_contig88274.20502.1 vs. uniprot
Match: A0A813A777_9DINO (Lrmda protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813A777_9DINO)

HSP 1 Score: 125 bits (315), Expect = 9.250e-33
Identity = 67/154 (43.51%), Postives = 89/154 (57.79%), Query Frame = 1
Query:    7 DLMLAEKALESVPTDVHASPESVRTLNLSGNALRSLAGLSAYSNLETLVLXXXXXXXXXXXXXXXXXXXLWFNTNAVEDMVEFLGEVVAAFPRLSFLSMMNNPASPSLVCMSEEDIKAQERHRLYVIYRVPTLEFLDAGPVSAEERASARERGR 468
            D    +  L ++P  V A+ E+V+TLNLS NAL S  G  A + L TL+L                   LWFN N V D+  F+  V + FP L+ LS+M NPASP +V +S+EDI   +R+RLY+IYR+P L FLDA PVS  ER  A  +G+
Sbjct:    7 DAAFVDAGLSALPPHVAAAGEAVKTLNLSENALTSWEGFEALTGLTTLILDKNGLEGLDGAPSLPALKELWFNNNQVHDLAAFMDSVTSNFPGLTTLSLMRNPASPPMVALSQEDIARAKRYRLYIIYRMPALAFLDATPVSTAEREEAAAKGK 160          
BLAST of mRNA_M-pyrifera_M_contig88274.20502.1 vs. uniprot
Match: A0A812HNT1_9DINO (LRMDA protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812HNT1_9DINO)

HSP 1 Score: 115 bits (287), Expect = 8.970e-27
Identity = 59/121 (48.76%), Postives = 76/121 (62.81%), Query Frame = 1
Query:  106 RSLAGLSAYSNLETLVLXXXXXXXXXXXXXXXXXXXLWFNTNAVEDMVEFLGEVVAAFPRLSFLSMMNNPASPSLVCMSEEDIKAQERHRLYVIYRVPTLEFLDAGPVSAEERASARERGR 468
            R L+GL  +S L+TL+L                   L FN NAVEDM  FL   + A P ++FLS+M NPASP ++ +SEED+ A  RHRLYV+YRVP+L FLDA PV+A ERA A  +G+
Sbjct:  860 RDLSGLELFSALDTLILDKNGLSSLEGAPKLPSVKTLSFNNNAVEDMTSFLDSALEAVPAVTFLSVMRNPASPPMIQLSEEDVAAATRHRLYVVYRVPSLTFLDAAPVTAAERAEAASKGK 980          
BLAST of mRNA_M-pyrifera_M_contig88274.20502.1 vs. uniprot
Match: UPI0016014B1F (leucine-rich melanocyte differentiation-associated protein-like isoform X2 n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI0016014B1F)

HSP 1 Score: 90.1 bits (222), Expect = 6.530e-19
Identity = 48/131 (36.64%), Postives = 76/131 (58.02%), Query Frame = 1
Query:   73 VRTLNLSGNALRSLAGLSAYSNLETLVLXXXXXXXXXXXXXXXXXXXLWFNTNAVEDMVEFLGEVVAAFPRLSFLSMMNNPASPSLVCMSEEDIKAQERHRLYVIYRVPTLEFLDAGPVSAEERASARERG 465
            V+ L+LS N +RSL GLS++  LE L++                   L  N N + D+ +FL +V  + P L++LS++ N A P+ +   ++D +  +R+R YV+Y++P+L FLDA PVS  E A A+ RG
Sbjct:   80 VKRLDLSFNRIRSLDGLSSFPELEELIVDNNELDDGVVFPRLPTLHTLMINKNRITDLEDFLNKVDTSCPNLTYLSLLGNVACPNELSAEDKDEEDYQRYRYYVLYKMPSLRFLDARPVSRTELAEAKTRG 210          
BLAST of mRNA_M-pyrifera_M_contig88274.20502.1 vs. uniprot
Match: A0A7S1CND0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CND0_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 9.110e-19
Identity = 42/85 (49.41%), Postives = 54/85 (63.53%), Query Frame = 1
Query:  214 LWFNTNAVEDMVEFLGEVVAAFPRLSFLSMMNNPASPSLVCMSEEDIKAQERHRLYVIYRVPTLEFLDAGPVSAEERASARERGR 468
            LW N N V D+     ++    P LSFL +M NPASP L   S+ D K   + RLY IY +PTL+FLD+ PVS EERA A++RG+
Sbjct:   18 LWLNDNKVSDLPTLYAQIRERMPSLSFLCLMRNPASPPLAPFSDADAKKIRQFRLYTIYSLPTLQFLDSSPVSPEERAEAKKRGK 102          
BLAST of mRNA_M-pyrifera_M_contig88274.20502.1 vs. uniprot
Match: UPI001601DF30 (leucine-rich melanocyte differentiation-associated protein-like isoform X1 n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI001601DF30)

HSP 1 Score: 90.1 bits (222), Expect = 3.320e-18
Identity = 48/131 (36.64%), Postives = 76/131 (58.02%), Query Frame = 1
Query:   73 VRTLNLSGNALRSLAGLSAYSNLETLVLXXXXXXXXXXXXXXXXXXXLWFNTNAVEDMVEFLGEVVAAFPRLSFLSMMNNPASPSLVCMSEEDIKAQERHRLYVIYRVPTLEFLDAGPVSAEERASARERG 465
            V+ L+LS N +RSL GLS++  LE L++                   L  N N + D+ +FL +V  + P L++LS++ N A P+ +   ++D +  +R+R YV+Y++P+L FLDA PVS  E A A+ RG
Sbjct:  246 VKRLDLSFNRIRSLDGLSSFPELEELIVDNNELDDGVVFPRLPTLHTLMINKNRITDLEDFLNKVDTSCPNLTYLSLLGNVACPNELSAEDKDEEDYQRYRYYVLYKMPSLRFLDARPVSRTELAEAKTRG 376          
BLAST of mRNA_M-pyrifera_M_contig88274.20502.1 vs. uniprot
Match: A0A1S3JY23_LINUN (leucine-rich melanocyte differentiation-associated protein n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3JY23_LINUN)

HSP 1 Score: 84.3 bits (207), Expect = 6.730e-17
Identity = 46/130 (35.38%), Postives = 70/130 (53.85%), Query Frame = 1
Query:   76 RTLNLSGNALRSLAGLSAYSNLETLVLXXXXXXXXXXXXXXXXXXXLWFNTNAVEDMVEFLGEVVAAFPRLSFLSMMNNPASPSLVCMSEEDIKAQERHRLYVIYRVPTLEFLDAGPVSAEERASARERG 465
            RTL+LS N + +L GL  + NLE L+L                   +  N N + D+   L ++    P L+FLS++ N A P+ +   ++D     R+R+YV+YRVP L+FLD+ PV   ERA A+ +G
Sbjct:   56 RTLDLSFNRISTLDGLENFPNLEELILDNNEVDDSINIPQMTKLHTISLNKNRISDLESLLEQINKNCPSLTFLSLLGNVACPNQLSSLDKDDDDYRRYRMYVLYRVPRLKFLDSSPVKEAERAEAKRQG 185          
BLAST of mRNA_M-pyrifera_M_contig88274.20502.1 vs. uniprot
Match: A0A5J4W6E8_9EUKA (Putative leucine-rich melanocyte differentiation-associated protein n=1 Tax=Streblomastix strix TaxID=222440 RepID=A0A5J4W6E8_9EUKA)

HSP 1 Score: 83.6 bits (205), Expect = 1.230e-16
Identity = 43/133 (32.33%), Postives = 74/133 (55.64%), Query Frame = 1
Query:   67 ESVRTLNLSGNALRSLAGLSAYSNLETLVLXXXXXXXXXXXXXXXXXXXLWFNTNAVEDMVEFLGEVVAAFPRLSFLSMMNNPASPSLVCMSEEDIKAQERHRLYVIYRVPTLEFLDAGPVSAEERASARERG 465
            + + +L++S N +RSL  +  +  L++LV                    LW N N + ++   L ++    P+LS+LS+M NPA P  +  +E++  A  R+RLYV++R+P L FLD+ PV+ +E+  A+ RG
Sbjct:   56 KDIHSLDISHNNIRSLENVQLFPKLKSLVADNNQIDDSVDFPPLPSLETLWMNNNRITEIKRLLDQLCQRAPQLSYLSLMKNPACPHRISGNEDEDYA--RYRLYVLWRIPKLRFLDSSPVTTKEKQEAQRRG 186          
BLAST of mRNA_M-pyrifera_M_contig88274.20502.1 vs. uniprot
Match: UPI0018D0D22F (leucine-rich melanocyte differentiation-associated protein isoform X2 n=1 Tax=Plutella xylostella TaxID=51655 RepID=UPI0018D0D22F)

HSP 1 Score: 81.6 bits (200), Expect = 5.390e-16
Identity = 44/131 (33.59%), Postives = 74/131 (56.49%), Query Frame = 1
Query:   73 VRTLNLSGNALRSLAGLSAYSNLETLVLXXXXXXXXXXXXXXXXXXXLWFNTNAVEDMVEFLGEVVAAFPRLSFLSMMNNPASPSLVCMSEEDIKAQERHRLYVIYRVPTLEFLDAGPVSAEERASARERG 465
            V  L+LS N++ +L  L  +  LE L+L                   L  N N +ED+   L ++ A+FP L++LS+++N A P  +   ++D    +R+R +VIY+VPTL+FLD+  ++ +ER+ A +RG
Sbjct:   41 VHYLDLSYNSIETLRDLDQFCGLEELILDNNKLGDGAAFPPLPRLRTLALNNNQIEDLEGLLDKIRASFPALTYLSLLSNKACPDQLSDLDKDESDYQRYRYFVIYKVPTLQFLDSRRITHQERSEALKRG 171          
BLAST of mRNA_M-pyrifera_M_contig88274.20502.1 vs. uniprot
Match: UPI0018D139F7 (leucine-rich melanocyte differentiation-associated protein isoform X1 n=1 Tax=Plutella xylostella TaxID=51655 RepID=UPI0018D139F7)

HSP 1 Score: 81.6 bits (200), Expect = 1.720e-15
Identity = 44/131 (33.59%), Postives = 74/131 (56.49%), Query Frame = 1
Query:   73 VRTLNLSGNALRSLAGLSAYSNLETLVLXXXXXXXXXXXXXXXXXXXLWFNTNAVEDMVEFLGEVVAAFPRLSFLSMMNNPASPSLVCMSEEDIKAQERHRLYVIYRVPTLEFLDAGPVSAEERASARERG 465
            V  L+LS N++ +L  L  +  LE L+L                   L  N N +ED+   L ++ A+FP L++LS+++N A P  +   ++D    +R+R +VIY+VPTL+FLD+  ++ +ER+ A +RG
Sbjct:  128 VHYLDLSYNSIETLRDLDQFCGLEELILDNNKLGDGAAFPPLPRLRTLALNNNQIEDLEGLLDKIRASFPALTYLSLLSNKACPDQLSDLDKDESDYQRYRYFVIYKVPTLQFLDSRRITHQERSEALKRG 258          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig88274.20502.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8E2Y0_CAFRO7.350e-3444.94Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A813A777_9DINO9.250e-3343.51Lrmda protein n=1 Tax=Symbiodinium sp. KB8 TaxID=2... [more]
A0A812HNT1_9DINO8.970e-2748.76LRMDA protein n=1 Tax=Symbiodinium sp. KB8 TaxID=2... [more]
UPI0016014B1F6.530e-1936.64leucine-rich melanocyte differentiation-associated... [more]
A0A7S1CND0_9STRA9.110e-1949.41Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
UPI001601DF303.320e-1836.64leucine-rich melanocyte differentiation-associated... [more]
A0A1S3JY23_LINUN6.730e-1735.38leucine-rich melanocyte differentiation-associated... [more]
A0A5J4W6E8_9EUKA1.230e-1632.33Putative leucine-rich melanocyte differentiation-a... [more]
UPI0018D0D22F5.390e-1633.59leucine-rich melanocyte differentiation-associated... [more]
UPI0018D139F71.720e-1533.59leucine-rich melanocyte differentiation-associated... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig88274contigM-pyrifera_M_contig88274:1..468 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score96.3
Seed ortholog evalue1.3e-17
Seed eggNOG ortholog946362.XP_004989152.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Leucine-rich repeat
EggNOG OGs3A3S1@33154,COG4886@1,KOG1644@2759
COG Functional cat.A
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
Exons1
Model size468
Cds size456
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816792.3239787-CDS-M-pyrifera_M_contig88274:0..4561622816792.3239787-CDS-M-pyrifera_M_contig88274:0..456Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88274 1..456 -
1692278181.1457186-CDS-M-pyrifera_M_contig88274:0..4561692278181.1457186-CDS-M-pyrifera_M_contig88274:0..456Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88274 1..456 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816792.3353646-UTR-M-pyrifera_M_contig88274:456..4681622816792.3353646-UTR-M-pyrifera_M_contig88274:456..468Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig88274 457..468 -
1692278181.1611207-UTR-M-pyrifera_M_contig88274:456..4681692278181.1611207-UTR-M-pyrifera_M_contig88274:456..468Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig88274 457..468 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig88274.20502.1prot_M-pyrifera_M_contig88274.20502.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig88274 1..456 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig88274.20502.1

>prot_M-pyrifera_M_contig88274.20502.1 ID=prot_M-pyrifera_M_contig88274.20502.1|Name=mRNA_M-pyrifera_M_contig88274.20502.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=152bp
MLAEKALESVPTDVHASPESVRTLNLSGNALRSLAGLSAYSNLETLVLDK
NGLASLPECPALPSVRTLWFNTNAVEDMVEFLGEVVAAFPRLSFLSMMNN
PASPSLVCMSEEDIKAQERHRLYVIYRVPTLEFLDAGPVSAEERASARER
GR
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mRNA from alignment at M-pyrifera_M_contig88274:1..468-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig88274.20502.1 ID=mRNA_M-pyrifera_M_contig88274.20502.1|Name=mRNA_M-pyrifera_M_contig88274.20502.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=468bp|location=Sequence derived from alignment at M-pyrifera_M_contig88274:1..468- (Macrocystis pyrifera P11B4 male)
GGTAGCGACTTGATGTTGGCTGAGAAGGCTCTGGAGTCTGTTCCGACCGA CGTGCATGCGTCTCCGGAGAGTGTGCGCACTCTGAATCTGAGCGGCAATG CGCTTCGATCGCTCGCGGGTCTGTCCGCGTATTCGAATCTGGAGACGCTG GTGCTGGACAAGAATGGGCTGGCGAGTCTCCCAGAATGCCCCGCGCTTCC GAGCGTGCGCACATTGTGGTTCAACACCAACGCGGTGGAGGACATGGTGG AGTTTCTCGGGGAGGTGGTGGCCGCCTTCCCGCGCCTCTCCTTCCTCTCC ATGATGAACAACCCGGCGTCGCCTTCCCTCGTCTGTATGAGCGAGGAGGA CATCAAGGCGCAGGAGCGACACCGGCTCTACGTCATCTACCGCGTGCCCA CCCTCGAATTCCTAGACGCAGGGCCCGTCTCCGCAGAAGAAAGAGCCAGC GCGCGGGAGCGAGGCCGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig88274:1..468-

>mRNA_M-pyrifera_M_contig88274.20502.1 ID=mRNA_M-pyrifera_M_contig88274.20502.1|Name=mRNA_M-pyrifera_M_contig88274.20502.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=912bp|location=Sequence derived from alignment at M-pyrifera_M_contig88274:1..468- (Macrocystis pyrifera P11B4 male)
ATGTTGGCTGAGAAGGCTCTGGAGTCTGTTCCGACCGACGTGCATGCGTC
TCCGGAGAGTGTGCGCACTCTGAATCTGAGCGGCAATGCGCTTCGATCGC
TCGCGGGTCTGTCCGCGTATTCGAATCTGGAGACGCTGGTGCTGGACAAG
AATGGGCTGGCGAGTCTCCCAGAATGCCCCGCGCTTCCGAGCGTGCGCAC
ATTGTGGTTCAACACCAACGCGGTGGAGGACATGGTGGAGTTTCTCGGGG
AGGTGGTGGCCGCCTTCCCGCGCCTCTCCTTCCTCTCCATGATGAACAAC
CCGGCGTCGCCTTCCCTCGTCTGTATGAGCGAGGAGGACATCAAGGCGCA
GGAGCGACACCGGCTCTACGTCATCTACCGCGTGCCCACCCTCGAATTCC
TAGACGCAGGGCCCGTCTCCGCAGAAGAAAGAGCCAGCGCGCGGGAGCGA
GGCCGCATGTTGGCTGAGAAGGCTCTGGAGTCTGTTCCGACCGACGTGCA
TGCGTCTCCGGAGAGTGTGCGCACTCTGAATCTGAGCGGCAATGCGCTTC
GATCGCTCGCGGGTCTGTCCGCGTATTCGAATCTGGAGACGCTGGTGCTG
GACAAGAATGGGCTGGCGAGTCTCCCAGAATGCCCCGCGCTTCCGAGCGT
GCGCACATTGTGGTTCAACACCAACGCGGTGGAGGACATGGTGGAGTTTC
TCGGGGAGGTGGTGGCCGCCTTCCCGCGCCTCTCCTTCCTCTCCATGATG
AACAACCCGGCGTCGCCTTCCCTCGTCTGTATGAGCGAGGAGGACATCAA
GGCGCAGGAGCGACACCGGCTCTACGTCATCTACCGCGTGCCCACCCTCG
AATTCCTAGACGCAGGGCCCGTCTCCGCAGAAGAAAGAGCCAGCGCGCGG
GAGCGAGGCCGC
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