mRNA_M-pyrifera_M_contig88257.20494.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig88257.20494.1
Unique NamemRNA_M-pyrifera_M_contig88257.20494.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig88257.20494.1 vs. uniprot
Match: A0A7Y2N8D9_9ACTN (Type II secretion system F family protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2N8D9_9ACTN)

HSP 1 Score: 276 bits (706), Expect = 2.020e-90
Identity = 149/197 (75.63%), Postives = 169/197 (85.79%), Query Frame = 1
Query:    1 VFIPLWMGFMLFVNPLGLGGIKMLAMLGLGAMVGALGPISQLNKKVEARQKEIQRTLPDTMDLLVISVEAGLGFEQALDRVIVNVPGALSDEFSRVLGESRAGSSRADALRAMDVRCDSPEVRSFVLAMIQADTFGVSIGRVLRSQADEMRIKRRQRAQEMAQKAPVKMLIPMVFCIFPALFVVVLGPAIINISKAF 591
            VFIP+W+  ML  NP  LGG+  LA  GLG M+GALGP + L KKV+ARQ  I R LPDT+DLLVISVEAGLGFEQA+DRVI NVPG LSDEF+RVLGE+RAG+SR+DALR+MD R   PE+RSFV++MIQADTFGVSIGRVLRSQADEMRIKRRQRAQE AQKAPVKM+IPMVFCIFPALFVVV+GPA+I+I   F
Sbjct:  117 VFIPVWLIVMLIWNPFALGGMLQLAATGLGVMIGALGPSNSLKKKVQARQLAIVRQLPDTLDLLVISVEAGLGFEQAVDRVIKNVPGNLSDEFARVLGETRAGASRSDALRSMDERVQVPEIRSFVMSMIQADTFGVSIGRVLRSQADEMRIKRRQRAQESAQKAPVKMMIPMVFCIFPALFVVVIGPAMISIVANF 313          
BLAST of mRNA_M-pyrifera_M_contig88257.20494.1 vs. uniprot
Match: A0A7Y2DQN3_9ACTN (Type II secretion system F family protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2DQN3_9ACTN)

HSP 1 Score: 273 bits (699), Expect = 2.320e-89
Identity = 149/197 (75.63%), Postives = 168/197 (85.28%), Query Frame = 1
Query:    1 VFIPLWMGFMLFVNPLGLGGIKMLAMLGLGAMVGALGPISQLNKKVEARQKEIQRTLPDTMDLLVISVEAGLGFEQALDRVIVNVPGALSDEFSRVLGESRAGSSRADALRAMDVRCDSPEVRSFVLAMIQADTFGVSIGRVLRSQADEMRIKRRQRAQEMAQKAPVKMLIPMVFCIFPALFVVVLGPAIINISKAF 591
            VFIP+W+  ML  NP  L G+  LA   LG M+GALGP + L+K+VEARQ  I R LPDT+DLLVISVEAGLGFEQALDRVI NVPG LSDEF+RVLGESRAGSSR+DALRAMD R + PE+RSFV++MIQAD FGVSIGRVLRSQ+DEMRIKRRQ+AQE AQKAPVKM+IPMVFCIFPALFVVVLGPA+I+I   F
Sbjct:  117 VFIPVWLIVMLIWNPFNLSGLLQLAATALGVMIGALGPSNTLSKRVEARQLAITRQLPDTLDLLVISVEAGLGFEQALDRVINNVPGELSDEFARVLGESRAGSSRSDALRAMDERVNVPEIRSFVMSMIQADQFGVSIGRVLRSQSDEMRIKRRQKAQETAQKAPVKMMIPMVFCIFPALFVVVLGPAMISIIANF 313          
BLAST of mRNA_M-pyrifera_M_contig88257.20494.1 vs. uniprot
Match: A0A5Q2RF45_9ACTN (Type II secretion system F family protein n=1 Tax=Actinomarinicola tropica TaxID=2789776 RepID=A0A5Q2RF45_9ACTN)

HSP 1 Score: 255 bits (651), Expect = 3.990e-82
Identity = 135/185 (72.97%), Postives = 159/185 (85.95%), Query Frame = 1
Query:   37 VNPLGLGGIKMLAMLGLGAMVGALGPISQLNKKVEARQKEIQRTLPDTMDLLVISVEAGLGFEQALDRVIVNVPGALSDEFSRVLGESRAGSSRADALRAMDVRCDSPEVRSFVLAMIQADTFGVSIGRVLRSQADEMRIKRRQRAQEMAQKAPVKMLIPMVFCIFPALFVVVLGPAIINISKAF 591
            VNPLG+ G+   A+ G  A     GP + LN+ VEARQ E++R LPD MD+LVISVEAGLGFEQA+DRV+ +VPGALSDEFSR+LGE RAGSSRADA+RA++ R D PE+RSFVL+++QADTFGVSIGRVLRSQADEMRIKRRQ AQE AQKAPVKM++PMVFC+FPALFVVVLGPAIINI ++F
Sbjct:  126 VNPLGMDGMMQHAVFGFAAFALIAGPDAILNRNVEARQYELRRQLPDIMDILVISVEAGLGFEQAIDRVVQSVPGALSDEFSRMLGEVRAGSSRADAMRALEERTDVPEIRSFVLSILQADTFGVSIGRVLRSQADEMRIKRRQLAQERAQKAPVKMMVPMVFCVFPALFVVVLGPAIINIRESF 310          
BLAST of mRNA_M-pyrifera_M_contig88257.20494.1 vs. uniprot
Match: UPI001D10B900 (type II secretion system F family protein n=1 Tax=Aquihabitans sp. Kera 3 TaxID=2884263 RepID=UPI001D10B900)

HSP 1 Score: 249 bits (637), Expect = 4.800e-80
Identity = 137/184 (74.46%), Postives = 159/184 (86.41%), Query Frame = 1
Query:   37 VNPLGLGGIKMLAMLGLGAMVGALGPISQLNKKVEARQKEIQRTLPDTMDLLVISVEAGLGFEQALDRVIVNVPGALSDEFSRVLGESRAGSSRADALRAMDVRCDSPEVRSFVLAMIQADTFGVSIGRVLRSQADEMRIKRRQRAQEMAQKAPVKMLIPMVFCIFPALFVVVLGPAIINISKA 588
            +N LGL G   LA+ G+  +V  L P   LN+KVEARQ EIQ TLPD MDLLVISVEAGLGFEQA+DRV+ +VPG LSDEFSR+LGE+RAG+SR+DA+RAMD RC+ PE+RSFV+A+IQAD FGVSIGRVLR+QADEMRIKRRQ AQE AQKAPVKMLIPMVFCIFPALFVVV+GPAI+NI ++
Sbjct:  124 INLLGLSGNMRLAVPGIIMLVLVLYPDMWLNRKVEARQHEIQITLPDVMDLLVISVEAGLGFEQAIDRVVNSVPGPLSDEFSRMLGETRAGASRSDAMRAMDDRCNVPELRSFVMAIIQADQFGVSIGRVLRAQADEMRIKRRQLAQERAQKAPVKMLIPMVFCIFPALFVVVIGPAIMNIRES 307          
BLAST of mRNA_M-pyrifera_M_contig88257.20494.1 vs. uniprot
Match: A0A3M2GEL6_ACTSX (Type II secretion system F family protein n=1 Tax=Actinomyces sp. TaxID=29317 RepID=A0A3M2GEL6_ACTSX)

HSP 1 Score: 247 bits (630), Expect = 5.870e-79
Identity = 133/193 (68.91%), Postives = 160/193 (82.90%), Query Frame = 1
Query:    7 IPLWMGFMLFVNPLGLGGIKMLAMLGLGAMVGALGPISQLNKKVEARQKEIQRTLPDTMDLLVISVEAGLGFEQALDRVIVNVPGALSDEFSRVLGESRAGSSRADALRAMDVRCDSPEVRSFVLAMIQADTFGVSIGRVLRSQADEMRIKRRQRAQEMAQKAPVKMLIPMVFCIFPALFVVVLGPAIINISK 585
            +PL +  + F NP+GLGG     + G+ A+V  +GP + LN+KVE RQK IQR LPD +DLLVISVEAGLGFEQALDR + +VPG LSDEF R+LGE RAG+SRA+A+RA+D R + PEVRSFVLA++QADTFGVSIGRVLR+QA+EMRIKRRQ AQE AQKAP+KMLIPMVFCIFPALF +VLGPA+I I+ 
Sbjct:  115 VPLVLWVIYFWNPIGLGGATRPGVAGMLALVLLVGPDASLNRKVEERQKTIQRQLPDIIDLLVISVEAGLGFEQALDRTVRSVPGPLSDEFVRMLGEVRAGASRAEAMRALDARTEVPEVRSFVLAILQADTFGVSIGRVLRAQAEEMRIKRRQLAQEKAQKAPIKMLIPMVFCIFPALFTIVLGPAVIRIAN 307          
BLAST of mRNA_M-pyrifera_M_contig88257.20494.1 vs. uniprot
Match: UPI001E453B11 (type II secretion system F family protein n=1 Tax=Rhabdothermincola sp. EGI L10124 TaxID=2903142 RepID=UPI001E453B11)

HSP 1 Score: 246 bits (628), Expect = 1.110e-78
Identity = 133/184 (72.28%), Postives = 151/184 (82.07%), Query Frame = 1
Query:   40 NPLGLGGIKMLAMLGLGAMVGALGPISQLNKKVEARQKEIQRTLPDTMDLLVISVEAGLGFEQALDRVIVNVPGALSDEFSRVLGESRAGSSRADALRAMDVRCDSPEVRSFVLAMIQADTFGVSIGRVLRSQADEMRIKRRQRAQEMAQKAPVKMLIPMVFCIFPALFVVVLGPAIINISKAF 591
            NPLG  G+  L    L A     GP + LN++VE R  E+QR LPD +DLL ISVEAGLGFEQALDR I  VPGALSDEF+R+LGE RAG+SRADA+R+M+ R D PEVRSFVLA++QADTFGVSIGRVLR+QADEMRIKRRQ AQE AQKAPVKM+IPMVFCIFPALFVVV+GPAIINI + F
Sbjct:  123 NPLGFEGLMQLGAFALLAFALVAGPDAVLNRRVEERANELQRKLPDILDLLTISVEAGLGFEQALDRTIAAVPGALSDEFARMLGEVRAGASRADAMRSMEQRTDVPEVRSFVLAILQADTFGVSIGRVLRAQADEMRIKRRQAAQERAQKAPVKMMIPMVFCIFPALFVVVIGPAIINIREGF 306          
BLAST of mRNA_M-pyrifera_M_contig88257.20494.1 vs. uniprot
Match: A0A538D7D1_9ACTN (Type II secretion system F family protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538D7D1_9ACTN)

HSP 1 Score: 246 bits (627), Expect = 1.620e-78
Identity = 135/195 (69.23%), Postives = 160/195 (82.05%), Query Frame = 1
Query:    7 IPLWMGFMLFVNPLGLGGIKMLAMLGLGAMVGALGPISQLNKKVEARQKEIQRTLPDTMDLLVISVEAGLGFEQALDRVIVNVPGALSDEFSRVLGESRAGSSRADALRAMDVRCDSPEVRSFVLAMIQADTFGVSIGRVLRSQADEMRIKRRQRAQEMAQKAPVKMLIPMVFCIFPALFVVVLGPAIINISKAF 591
            IP+   F + +NPLG  G+  L   GL  M+  LGP + LN++V  RQ EI+  LPD +DLLVISVEAGLGFEQALD+ I +VPG LSDEF R+LGE+ AGS RA+ALRAM+ R D PEV+SFVLA+IQADTFG+SIGRVLR QA+E+RI+RRQ+AQEMAQKAPVKMLIPMVFCIFPALF VVLGPA+INISK+F
Sbjct:  115 IPVSFWFFMILNPLGQKGMLRLITFGLIVMMLFLGPDAILNRRVSERQYEIRIGLPDVLDLLVISVEAGLGFEQALDKTIASVPGPLSDEFVRMLGETSAGSGRAEALRAMEQRIDIPEVKSFVLAIIQADTFGISIGRVLRGQAEELRIRRRQKAQEMAQKAPVKMLIPMVFCIFPALFAVVLGPALINISKSF 309          
BLAST of mRNA_M-pyrifera_M_contig88257.20494.1 vs. uniprot
Match: UPI001AA02FCA (type II secretion system F family protein n=1 Tax=Rhabdothermincola sediminis TaxID=2751370 RepID=UPI001AA02FCA)

HSP 1 Score: 245 bits (626), Expect = 2.030e-78
Identity = 136/195 (69.74%), Postives = 161/195 (82.56%), Query Frame = 1
Query:    7 IPLWMGFMLFVNPLGLGGIKMLAMLGLGAMVGALGPISQLNKKVEARQKEIQRTLPDTMDLLVISVEAGLGFEQALDRVIVNVPGALSDEFSRVLGESRAGSSRADALRAMDVRCDSPEVRSFVLAMIQADTFGVSIGRVLRSQADEMRIKRRQRAQEMAQKAPVKMLIPMVFCIFPALFVVVLGPAIINISKAF 591
            +PL   F    NPL L G+  LA   L +     GP + L++KVEARQ ++Q TLPD +DLL ISVEAGLGFEQALDRVIV VPG LS+EF+R+LGE+RAG+SRADA+RA++ R + PEVRSFVLA++QADTFGVSIGRVLR+QA+EMR+KRRQ AQE AQKAPVKMLIPMVFCIFPALFV+VLGPAIINI +AF
Sbjct:  111 VPLVFIFAFIWNPLRLEGMTQLAAFLLLSFALLAGPDASLSRKVEARQHQLQVTLPDILDLLTISVEAGLGFEQALDRVIVAVPGPLSEEFARMLGETRAGASRADAMRALEARTNVPEVRSFVLAILQADTFGVSIGRVLRAQAEEMRVKRRQLAQERAQKAPVKMLIPMVFCIFPALFVIVLGPAIINIREAF 305          
BLAST of mRNA_M-pyrifera_M_contig88257.20494.1 vs. uniprot
Match: A0A0J0V0G7_9ACTN (Flp pilus assembly protein TadC n=6 Tax=root TaxID=1 RepID=A0A0J0V0G7_9ACTN)

HSP 1 Score: 242 bits (617), Expect = 5.130e-77
Identity = 132/183 (72.13%), Postives = 155/183 (84.70%), Query Frame = 1
Query:   40 NPLGLGGIKMLAMLGLGAMVGALGPISQLNKKVEARQKEIQRTLPDTMDLLVISVEAGLGFEQALDRVIVNVPGALSDEFSRVLGESRAGSSRADALRAMDVRCDSPEVRSFVLAMIQADTFGVSIGRVLRSQADEMRIKRRQRAQEMAQKAPVKMLIPMVFCIFPALFVVVLGPAIINISKA 588
            N  GL G   LA  GL  +V  +GP S LN+KV ARQ  +QR LPDT+DLL ISVEAGLGFEQALDRVI  VPG L+DEF+R+LGE+RAG++R+DALRAMD RCD PE+R+FVL++IQAD FGVSIGRVLR+QA+EMRIKRRQ AQE AQKAPVKMLIPMVFCIFPALF+VVLGPA+++I K+
Sbjct:  125 NLSGLTGNMKLAAGGLLMLVLVIGPDSSLNRKVAARQLAMQRALPDTLDLLTISVEAGLGFEQALDRVITAVPGPLTDEFARMLGETRAGAARSDALRAMDERCDVPELRAFVLSIIQADNFGVSIGRVLRAQAEEMRIKRRQLAQERAQKAPVKMLIPMVFCIFPALFLVVLGPAMLSIKKS 307          
BLAST of mRNA_M-pyrifera_M_contig88257.20494.1 vs. uniprot
Match: A0A7X6AR20_9ACTN (Type II secretion system F family protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X6AR20_9ACTN)

HSP 1 Score: 242 bits (617), Expect = 5.290e-77
Identity = 134/197 (68.02%), Postives = 158/197 (80.20%), Query Frame = 1
Query:    1 VFIPLWMGFMLFVNPLGLGGIKMLAMLGLGAMVGALGPISQLNKKVEARQKEIQRTLPDTMDLLVISVEAGLGFEQALDRVIVNVPGALSDEFSRVLGESRAGSSRADALRAMDVRCDSPEVRSFVLAMIQADTFGVSIGRVLRSQADEMRIKRRQRAQEMAQKAPVKMLIPMVFCIFPALFVVVLGPAIINISKAF 591
            V +P+   F    NPLG+GG   + +  L A+   LGP ++LN+ VE RQK I R LPD +DLLVISVEAGLGFEQAL R IV+VPG LS+EF+R+LGE RAGS+RA+A+RAMD R +  EVRSFVLA++QADTFGVSIGRVLR+QA+EMRIKRRQ AQE AQKAPVKMLIPMVFCIFPALF VVLGPA+I I + F
Sbjct:  113 VLVPVSFWFFYIWNPLGVGGNTQMGITALVALTLILGPDAKLNRAVEDRQKSIMRGLPDIIDLLVISVEAGLGFEQALQRTIVSVPGPLSEEFARMLGEVRAGSTRAEAMRAMDARIEVTEVRSFVLAILQADTFGVSIGRVLRAQAEEMRIKRRQLAQEKAQKAPVKMLIPMVFCIFPALFTVVLGPAVIRIMQNF 309          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig88257.20494.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7Y2N8D9_9ACTN2.020e-9075.63Type II secretion system F family protein n=1 Tax=... [more]
A0A7Y2DQN3_9ACTN2.320e-8975.63Type II secretion system F family protein n=1 Tax=... [more]
A0A5Q2RF45_9ACTN3.990e-8272.97Type II secretion system F family protein n=1 Tax=... [more]
UPI001D10B9004.800e-8074.46type II secretion system F family protein n=1 Tax=... [more]
A0A3M2GEL6_ACTSX5.870e-7968.91Type II secretion system F family protein n=1 Tax=... [more]
UPI001E453B111.110e-7872.28type II secretion system F family protein n=1 Tax=... [more]
A0A538D7D1_9ACTN1.620e-7869.23Type II secretion system F family protein n=1 Tax=... [more]
UPI001AA02FCA2.030e-7869.74type II secretion system F family protein n=1 Tax=... [more]
A0A0J0V0G7_9ACTN5.130e-7772.13Flp pilus assembly protein TadC n=6 Tax=root TaxID... [more]
A0A7X6AR20_9ACTN5.290e-7768.02Type II secretion system F family protein n=1 Tax=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig88257contigM-pyrifera_M_contig88257:218..811 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score175.6
Seed ortholog evalue2.2e-41
Seed eggNOG ortholog401526.TcarDRAFT_1916
Preferred nametadC
KEGG koko:K12511
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Type II secretion system
EggNOG OGs1V2T1@1239,4H46H@909932,COG2064@1,COG2064@2
COG Functional cat.NU
Best tax levelNegativicutes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02044
Exons1
Model size594
Cds size576
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816791.93878-CDS-M-pyrifera_M_contig88257:217..7931622816791.93878-CDS-M-pyrifera_M_contig88257:217..793Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88257 218..793 -
1692278180.9193323-CDS-M-pyrifera_M_contig88257:217..7931692278180.9193323-CDS-M-pyrifera_M_contig88257:217..793Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88257 218..793 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816791.9496877-UTR-M-pyrifera_M_contig88257:793..8111622816791.9496877-UTR-M-pyrifera_M_contig88257:793..811Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig88257 794..811 -
1692278180.9325242-UTR-M-pyrifera_M_contig88257:793..8111692278180.9325242-UTR-M-pyrifera_M_contig88257:793..811Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig88257 794..811 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig88257.20494.1prot_M-pyrifera_M_contig88257.20494.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig88257 218..793 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig88257.20494.1

>prot_M-pyrifera_M_contig88257.20494.1 ID=prot_M-pyrifera_M_contig88257.20494.1|Name=mRNA_M-pyrifera_M_contig88257.20494.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=192bp
MGFMLFVNPLGLGGIKMLAMLGLGAMVGALGPISQLNKKVEARQKEIQRT
LPDTMDLLVISVEAGLGFEQALDRVIVNVPGALSDEFSRVLGESRAGSSR
ADALRAMDVRCDSPEVRSFVLAMIQADTFGVSIGRVLRSQADEMRIKRRQ
RAQEMAQKAPVKMLIPMVFCIFPALFVVVLGPAIINISKAF*
back to top

mRNA from alignment at M-pyrifera_M_contig88257:218..811-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig88257.20494.1 ID=mRNA_M-pyrifera_M_contig88257.20494.1|Name=mRNA_M-pyrifera_M_contig88257.20494.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=594bp|location=Sequence derived from alignment at M-pyrifera_M_contig88257:218..811- (Macrocystis pyrifera P11B4 male)
GTGTTCATCCCGCTCTGGATGGGTTTCATGTTGTTCGTGAATCCGCTCGG ACTCGGTGGCATCAAGATGCTGGCCATGCTCGGTCTGGGTGCGATGGTCG GTGCGCTCGGCCCGATCTCGCAGCTCAACAAGAAGGTCGAGGCCCGCCAG AAGGAGATCCAGCGGACGCTCCCCGACACGATGGACCTCCTCGTGATCTC GGTCGAAGCCGGACTCGGCTTCGAACAGGCACTCGATCGAGTGATCGTGA ACGTGCCCGGTGCACTCTCCGACGAGTTCTCCCGAGTGCTCGGCGAGAGC CGGGCAGGATCGAGCCGTGCTGACGCTCTGCGTGCCATGGACGTTCGTTG CGACTCGCCGGAAGTTCGCTCCTTCGTGCTCGCCATGATCCAGGCCGACA CCTTCGGCGTGAGCATCGGCCGAGTCCTGCGTTCGCAGGCCGACGAGATG CGAATCAAGCGTCGCCAGCGAGCCCAGGAGATGGCGCAGAAGGCGCCGGT CAAGATGCTGATCCCGATGGTGTTCTGTATCTTCCCCGCACTGTTCGTCG TAGTTCTCGGGCCGGCCATCATCAACATCTCGAAGGCGTTCTAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig88257:218..811-

>mRNA_M-pyrifera_M_contig88257.20494.1 ID=mRNA_M-pyrifera_M_contig88257.20494.1|Name=mRNA_M-pyrifera_M_contig88257.20494.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1152bp|location=Sequence derived from alignment at M-pyrifera_M_contig88257:218..811- (Macrocystis pyrifera P11B4 male)
ATGGGTTTCATGTTGTTCGTGAATCCGCTCGGACTCGGTGGCATCAAGAT
GCTGGCCATGCTCGGTCTGGGTGCGATGGTCGGTGCGCTCGGCCCGATCT
CGCAGCTCAACAAGAAGGTCGAGGCCCGCCAGAAGGAGATCCAGCGGACG
CTCCCCGACACGATGGACCTCCTCGTGATCTCGGTCGAAGCCGGACTCGG
CTTCGAACAGGCACTCGATCGAGTGATCGTGAACGTGCCCGGTGCACTCT
CCGACGAGTTCTCCCGAGTGCTCGGCGAGAGCCGGGCAGGATCGAGCCGT
GCTGACGCTCTGCGTGCCATGGACGTTCGTTGCGACTCGCCGGAAGTTCG
CTCCTTCGTGCTCGCCATGATCCAGGCCGACACCTTCGGCGTGAGCATCG
GCCGAGTCCTGCGTTCGCAGGCCGACGAGATGCGAATCAAGCGTCGCCAG
CGAGCCCAGGAGATGGCGCAGAAGGCGCCGGTCAAGATGCTGATCCCGAT
GGTGTTCTGTATCTTCCCCGCACTGTTCGTCGTAGTTCTCGGGCCGGCCA
TCATCAACATCTCGAAGGCGTTCTAGATGGGTTTCATGTTGTTCGTGAAT
CCGCTCGGACTCGGTGGCATCAAGATGCTGGCCATGCTCGGTCTGGGTGC
GATGGTCGGTGCGCTCGGCCCGATCTCGCAGCTCAACAAGAAGGTCGAGG
CCCGCCAGAAGGAGATCCAGCGGACGCTCCCCGACACGATGGACCTCCTC
GTGATCTCGGTCGAAGCCGGACTCGGCTTCGAACAGGCACTCGATCGAGT
GATCGTGAACGTGCCCGGTGCACTCTCCGACGAGTTCTCCCGAGTGCTCG
GCGAGAGCCGGGCAGGATCGAGCCGTGCTGACGCTCTGCGTGCCATGGAC
GTTCGTTGCGACTCGCCGGAAGTTCGCTCCTTCGTGCTCGCCATGATCCA
GGCCGACACCTTCGGCGTGAGCATCGGCCGAGTCCTGCGTTCGCAGGCCG
ACGAGATGCGAATCAAGCGTCGCCAGCGAGCCCAGGAGATGGCGCAGAAG
GCGCCGGTCAAGATGCTGATCCCGATGGTGTTCTGTATCTTCCCCGCACT
GTTCGTCGTAGTTCTCGGGCCGGCCATCATCAACATCTCGAAGGCGTTCT
AG
back to top