mRNA_M-pyrifera_M_contig882.20488.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig882.20488.1
Unique NamemRNA_M-pyrifera_M_contig882.20488.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig882.20488.1 vs. uniprot
Match: A0A7S4FMU5_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4FMU5_9EUGL)

HSP 1 Score: 119 bits (299), Expect = 1.760e-28
Identity = 84/199 (42.21%), Postives = 108/199 (54.27%), Query Frame = 1 
Query:   73 FDCFGRACHGSRVRGYGCKFKAGDVVGVLLNTANNSLYFFMQGKCMGTAFRNVCVPAGLGLYPLVVLPSVPNETVRLVRRPKGGGASFPAPVRYLLQTERTWQPRTHPNDWDIVVETYDAQAIYRLRGLDPACTTVGGLKEALVQCEDMDLFTPGQLALRIKGALLLNDSVVLSALGVSFSSRGSQLQQIYLYVPHLIS 669
            FDC+GR     R   YG K + G VVG+L   A  +LYFF  G+CMG A  ++     L LYP++ +P VP E VRL R P+     FP  V  L  T++ W  R H +D  ++VE+Y+    YRL  LDP  TTV  +K  L +  ++  FTP QLALR  G   L +   L   GVSF+     LQ I L V HLIS
Sbjct:    1 FDCWGRFHSQGRQMMYGGKMRTGAVVGLLYVCATRTLYFFEDGRCMGPAIADLPDQNQL-LYPILNIPCVPGEQVRL-RAPRK--VPFPTCVEGL--TKQPWTLRAHDDDHKLIVESYEGLHTYRLPDLDPDTTTVFDIKRMLAK--ELS-FTPEQLALRSGGQEPLRNYASLRDSGVSFAPNRVHLQAITLSVTHLIS 190
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BLAST of mRNA_M-pyrifera_M_contig882.20488.1 vs. uniprot
Match: A0A6H5KUF2_9PHAE (B30.2/SPRY domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUF2_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 5.840e-16
Identity = 43/73 (58.90%), Postives = 55/73 (75.34%), Query Frame = 1 
Query:   61 QCWVFDCFGRACHGSRVRGYGCKFKAGDVVGVLLNTANNSLYFFMQGKCMGTAFRNVCVPAGLGLYPLVVLPS 279
            +CWV DC+GRACHG+R+RGYGCK KAGDV+GVLLNTA++SL FF++G  +      VC  +   LY LV+L S
Sbjct:  178 ECWVIDCYGRACHGTRLRGYGCKLKAGDVLGVLLNTADDSLSFFVKGMHL----TMVC--SDDDLYTLVLLTS 244
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig882.20488.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S4FMU5_9EUGL1.760e-2842.21Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A6H5KUF2_9PHAE5.840e-1658.90B30.2/SPRY domain-containing protein n=1 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig882contigM-pyrifera_M_contig882:4580..8672 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size1187
Cds size480
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816791.6323595-UTR-M-pyrifera_M_contig882:4579..50941622816791.6323595-UTR-M-pyrifera_M_contig882:4579..5094Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig882 4580..5094 -
1692278180.6880553-UTR-M-pyrifera_M_contig882:4579..50941692278180.6880553-UTR-M-pyrifera_M_contig882:4579..5094Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig882 4580..5094 -
1622816791.7078335-UTR-M-pyrifera_M_contig882:8480..86721622816791.7078335-UTR-M-pyrifera_M_contig882:8480..8672Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig882 8481..8672 -
1692278180.756874-UTR-M-pyrifera_M_contig882:8480..86721692278180.756874-UTR-M-pyrifera_M_contig882:8480..8672Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig882 8481..8672 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816791.6453557-CDS-M-pyrifera_M_contig882:5094..52601622816791.6453557-CDS-M-pyrifera_M_contig882:5094..5260Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig882 5095..5260 -
1692278180.7010143-CDS-M-pyrifera_M_contig882:5094..52601692278180.7010143-CDS-M-pyrifera_M_contig882:5094..5260Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig882 5095..5260 -
1622816791.6574802-CDS-M-pyrifera_M_contig882:6008..60791622816791.6574802-CDS-M-pyrifera_M_contig882:6008..6079Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig882 6009..6079 -
1692278180.7129726-CDS-M-pyrifera_M_contig882:6008..60791692278180.7129726-CDS-M-pyrifera_M_contig882:6008..6079Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig882 6009..6079 -
1622816791.6722093-CDS-M-pyrifera_M_contig882:6486..65711622816791.6722093-CDS-M-pyrifera_M_contig882:6486..6571Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig882 6487..6571 -
1692278180.7247663-CDS-M-pyrifera_M_contig882:6486..65711692278180.7247663-CDS-M-pyrifera_M_contig882:6486..6571Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig882 6487..6571 -
1622816791.6838794-CDS-M-pyrifera_M_contig882:7566..77171622816791.6838794-CDS-M-pyrifera_M_contig882:7566..7717Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig882 7567..7717 -
1692278180.734564-CDS-M-pyrifera_M_contig882:7566..77171692278180.734564-CDS-M-pyrifera_M_contig882:7566..7717Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig882 7567..7717 -
1622816791.695021-CDS-M-pyrifera_M_contig882:8473..84801622816791.695021-CDS-M-pyrifera_M_contig882:8473..8480Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig882 8474..8480 -
1692278180.7463095-CDS-M-pyrifera_M_contig882:8473..84801692278180.7463095-CDS-M-pyrifera_M_contig882:8473..8480Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig882 8474..8480 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig882.20488.1prot_M-pyrifera_M_contig882.20488.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig882 5095..8480 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig882.20488.1

>prot_M-pyrifera_M_contig882.20488.1 ID=prot_M-pyrifera_M_contig882.20488.1|Name=mRNA_M-pyrifera_M_contig882.20488.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=160bp
MQGKCMGTAFRNVCVPAGLGLYPLVVLPSVPNETVRLVRRPKGGGASFPA
PVRYLLQTERTWQPRTHPNDWDIVVETYDAQAIYRLRGLDPACTTVGGLK
EALVQCEDMDLFTPGQLALRIKGALLLNDSVVLSALGVSFSSRGSQLQQI
YLYVPHLIS*
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mRNA from alignment at M-pyrifera_M_contig882:4580..8672-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig882.20488.1 ID=mRNA_M-pyrifera_M_contig882.20488.1|Name=mRNA_M-pyrifera_M_contig882.20488.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=4093bp|location=Sequence derived from alignment at M-pyrifera_M_contig882:4580..8672- (Macrocystis pyrifera P11B4 male)
CTCCTACCCGCCCACCCCACCTTTCGGCGCCCCTTCCATGTACGCGAAAT
ATTGGTGAAACAGTGCTGGGTTTTTGATTGCTTTGGGCGAGCCTGCCACG
GATCTCGCGTGCGAGGCTACGGGTGCAAATTCAAGGCCGGGGACGTGGTG
GGTGTGCTGCTCAATACCGCCAACAACTCCCTCTATTTCTTCATGCAAGG
TGCAGATTTGTACGAGTAGACCTTTGGTGGCGCAGAGTACATTGCCGGAA
AGCACGTTACTTGTGTTTGGAGTTTGAAGATCCTTACCCACAACAATGCA
TCCGGTATACTTTTCGCACTGTAGTTGTATCCGCCATATAGTTCGATGAC
TAGCAACGTAGAAATAATCTTGCAGATAGTTTGGACTATCTGCAGATGCT
ACCTGGCAGTACGACGTATTCACCGTCAGCCTCAGCGCGATCCCGTACTA
CCGGTGCGTCGCTGCAGTTTATGCTGGCTACCGTTTCCGCGGGCGACGTT
TTGAAGAGGAACTGCAATTCGTTCTCGATCCTCGATTTGGCGCCTCACAA
AATATCGCACCCGTGCTCCCGTCCATGCTCTCACTCGGTAGCACCTTCCG
TGGCCGAGCGAAACAGTTGCATAGTTATTCCTTCACAGCAATTATACCTA
CGCCAAATGACTGTCAGCAGTACAGTTGAGAGTAGTTCTTTACTGTAAGG
ATGTTTTTTTTTTTTTCAATTTCGTCTCAACCACATCGTCATCACAGTTA
TCCCGTCACTCTTGTGTAATACCTGCGTCTTGACAGCCTAGGCAACTAAA
AAAAATGTCGTCCGACCCCACTCGTCGTCAAAGTCAAGCCAACATCCTTG
TGTCTCAAACTTTTATACACCTGACAAAAGGCCGTTTCACCCCCTCCCTG
ATATTTTTTTTGCCCGCCTTTTGACGGTATCTCCGGTGTTGCCGTTATTT
TGCAGGCAAGTGCATGGGAACAGCGTTTCGCAATGTGTGTGTCCCCGCGG
GACTAGGCCTCTACCCGCTCGTCGTGCTTCCCAGCGTACCTAACGAGACC
GTGAGGTTGGTCAGACGCCCGAAGGGGGGAGGTGCATCGTTCCCTGCCCC
TGTAAGGTGAGCGCTGCCGAATGGATTAGGACCCGCTGCGCCGTCACGTG
CAGCTGCACGGTGGCGTGTATTGTTAGCAGATAATAATATGCCGGTGTAA
TATTTCAACAGACGGCCTTGCATAACCTCGACTGGGGACTGTTCGCGCGG
GAGTGTATGTGTCATAGGTGCTTTCGTGTGTGTCGCGTTTGCGATGTTGA
GACGAGAAGTTGAGGCGCACGGGTCGTGGAACCGCAGAAGAGTGCAACGG
AAGGCAAGGCGCAGGAGCTTTGACGCGAATAGTCTACAAGTATTGCCGAG
GGGTGAAATGTTGGGCATCTCGGATGCTTTTGCGTTACGCCAGGTCGGCG
TTAAGCTGTGTATTGCAATTATGTACTGTACGGGGCGCCTTTTCCTCTCG
TTGCCAAAGGGCCACCACTTGTGCACCGGGAAGCTAACAATATTTGGACT
GCATTTAGTACACCGCCAACCGGCGTCCTGAGTGGCTTGGTAGGTGGTAC
GCGAGCCTACTCTTCTTCAATTTCGTGGGTTCGAGTGTCACCGAGTACAT
ACTCGTAGGGACTTTTCCTTGCATACAAAAAGTTGATTAGCAGAGCGTGA
GTTGGCACCATTGGATGAAAATCGACGAACAAGCATAGTGGGAATACTGA
ACCCTATGCGCGATAAAGACGAAGGCACGTACCGAGGGGGAGAAGGGATG
ACACCTGTGACCACGGCTTGTCTAAAAGATCGTTGAAGGTAAAACCTCCA
ACAAGTTTAGCTGGAAAGTAAAAGTGACGAAAATAAAAATAGTGGGGTCC
TCAACGCAGAAACGTAGAGGACGCAAGACATCGGGATCTCAGCGCAGAAA
CAACATTGTTTGGCATACTGGAGATTGCAAGAAGAAAGCGACCTACCGAA
TGACAAACTATATGTCCAGTACGCTGAAACCCCCGACCCAATGCCACTTG
CTTGGACGGCGCACATACGCGGGGTGTTTGCTTATGCTGAATTCGTTTCA
GATATCTGTTGCAGACGGAGCGGACGTGGCAGCCGCGCACACATCCGAAC
GACTGGGATATCGTGGTGGAAACGTACGATGCTCAGGTGGGACCGGTGGG
ATTGCGGTATGCGGTATGCGCCGCGCGGTATTGCTCACAAGTCACCTTGC
TGCGACTCGTGCTTCTTGCTCGCGTCGCGGCGAATTTCGAACCCATTCCC
GCGTCCTCGGCTCCAAGTTGAGGTGTCAGCTTCCTTCGACACGAATAAAA
TCGATGGGCACTGATTTAACGAACGCTTATTGCTACTACCGTACTGTGTT
TTGCGGGCCCTTCTGGTTTCTATCGCGGAAAGACTATCCGACACGTCCTC
ATTGTGCAAATGACGGCGGCGGCGGTACCATGATGATTTGTGGAGATGTG
ACCGCGCCGTAGAGGCCCATGGGTGGGGGCCGGGCCGAGCTCCTATAATA
TCGCTAAGCTAAGTGATGTTGACGTGTACCGCTCGCTGAACAGGCCATCT
ACCGCCTGAGAGGATTGGACCCGGCCTGCACAACGGTGGGCGGCCTAAAG
GAGGCGCTTGTCCAGTGAGTTATCACCATTCCAATATTCTCTCCTTGCCC
CTGGCTACCTACACGTCGACCGGGTGAACGTTTGGGTGATGGGGGCTACT
TTACGGCTGACCTATCATATAAACATATGTTGTCCGGGTGCACTTTTCGT
TTGTTTTTATCTGAAGACCGACCTGAGGGAACGCGCCAAGTTTGTTTTTG
TTTCTTGTGGGTGATCTTGCTGCAGCAGTCCCCTCTTGACGCTTTTGAAT
TTCCAGTAACCCTATATTGAACATTTTGAAATGTCAGTAACTCCCTTTTG
ATAGTGAGTTGTCAGTAGTCCCATATCAACGATTTTATGTTGCCGGTAGC
CCCCTGACATCAATTTTAAAGTGCCAGTAGCCCCCCTGTCGATGCTTTTG
GAATGCGAGTAGCCCCGTGTTGATGCTTCTGAAGTCTCAGCGGCCGCCAA
ATAACTTTGTGTTGTGGCAGTAGCCCCCTATTAGTGCTGTTGAGAGAACA
ACGATCGTTTCACCGCCCCGACCCCCTTTCTCGTGTGACTTGTCTGAACC
CTAACAATGAAAACGTGGTTCTGTTTAATTTGTAGCTGACCCACGGGTAG
TCAATGTTCGACCGTCTGGTACCGTTCCATTATCGTACCCTCTCGTGCGT
CGTCTTTTTCGAGCGGAAATCCGCCGGCGCCGTACCATCCCTGTACCTCC
TCATGAGTCCTCACGTCGGGATGGTCATGCTTGTACCCCCCCGTGCATCG
TCGTGCCCTCAGGTGCGAAGATATGGACTTGTTCACCCCAGGGCAGCTGG
CGCTTCGTATAAAGGGAGCGTTGCTGTTGAACGACTCGGTTGTTCTCAGC
GCGCTAGGCGTTTCGTTTAGCTCTCGAGGATCACAGCTACAGCAGATATA
CCTGTACGTGCCGCACCTCATTAGCTAGCGGGGCAAGAACCAGCTTGGTA
GGGGCGCTATACTCATGTTGTCGGGGTGTCGGCTATCGCTTTCCGTGCAT
GCTGATGGTGTTTCTATGCCAATCCCTTCCACGACCAATTCGTGGCGGAG
GATACCCGTTTCCGCTGCCTAGAACAGCAAAAACCTCTTCGTTGAGGTGA
TATTATGGCGCCGATTTGACGGTTTAGAGCCGTATGTAAAAGGCTCTTGG
GAGCAGTAGTAAACACACTCCATGGATGTGGGGAAATCAGAAATATCAAG
GAAGTGGACTGCCACGTCTAAATGCATGGTCAATATTGCCGCCTTGCGTT
GGTTGGTTACGAGTGTGCCATGGCTTGCTTCCTAGTGTTGAACTGTACGC
GATCCTGTAGGCATTGCCGTATGTTGCCTAACTCAACGTACTGACCTCTG
GGAGTGGAGACCTGCTTTTTGCATGTCCACACAACGCTCCCCCCAAAAAA
CAGGGACCTAAACGAAATACGATATCCCAAAAGCTGAGCGGTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig882:4580..8672-

>mRNA_M-pyrifera_M_contig882.20488.1 ID=mRNA_M-pyrifera_M_contig882.20488.1|Name=mRNA_M-pyrifera_M_contig882.20488.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=960bp|location=Sequence derived from alignment at M-pyrifera_M_contig882:4580..8672- (Macrocystis pyrifera P11B4 male)
ATGCAAGATGCAAGGCAAGTGCATGGGAACAGCGTTTCGCAATGTGTGTG
TCCCCGCGGGACTAGGCCTCTACCCGCTCGTCGTGCTTCCCAGCGTACCT
AACGAGACCGTGAGGTTGGTCAGACGCCCGAAGGGGGGAGGTGCATCGTT
CCCTGCCCCTGTAAGGCAAGTGCATGGGAACAGCGTTTCGCAATGTGTGT
GTCCCCGCGGGACTAGGCCTCTACCCGCTCGTCGTGCTTCCCAGCGTACC
TAACGAGACCGTGAGGTTGGTCAGACGCCCGAAGGGGGGAGGTGCATCGT
TCCCTGCCCCTGTAAGATATCTGTTGCAGACGGAGCGGACGTGGCAGCCG
CGCACACATCCGAACGACTGGGATATCGTGGTGGAAACGTACGATGCTCA
GATATCTGTTGCAGACGGAGCGGACGTGGCAGCCGCGCACACATCCGAAC
GACTGGGATATCGTGGTGGAAACGTACGATGCTCAGGCCATCTACCGCCT
GAGAGGATTGGACCCGGCCTGCACAACGGTGGGCGGCCTAAAGGAGGCGC
TTGTCCAGCCATCTACCGCCTGAGAGGATTGGACCCGGCCTGCACAACGG
TGGGCGGCCTAAAGGAGGCGCTTGTCCAGTGCGAAGATATGGACTTGTTC
ACCCCAGGGCAGCTGGCGCTTCGTATAAAGGGAGCGTTGCTGTTGAACGA
CTCGGTTGTTCTCAGCGCGCTAGGCGTTTCGTTTAGCTCTCGAGGATCAC
AGCTACAGCAGATATACCTGTACGTGCCGCACCTCATTAGCTAGGTGCGA
AGATATGGACTTGTTCACCCCAGGGCAGCTGGCGCTTCGTATAAAGGGAG
CGTTGCTGTTGAACGACTCGGTTGTTCTCAGCGCGCTAGGCGTTTCGTTT
AGCTCTCGAGGATCACAGCTACAGCAGATATACCTGTACGTGCCGCACCT
CATTAGCTAG
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