mRNA_M-pyrifera_M_contig88191.20485.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig88191.20485.1
Unique NamemRNA_M-pyrifera_M_contig88191.20485.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig88191.20485.1 vs. uniprot
Match: A0A5A8CRJ1_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CRJ1_CAFRO)

HSP 1 Score: 165 bits (418), Expect = 4.700e-46
Identity = 84/168 (50.00%), Postives = 117/168 (69.64%), Query Frame = 1 
Query:   28 LPRSEFMSMDGWKRTYSNAPLK-DDGERDFESAVREFFTAEEGKGFDPKCYSVWKGSYNYNSDNKVAFMVSNLIGGFVQRSDAIRKEAFGVHVSLGDAAPFQVSGIWMWKGQEPTPMLEANPDAEYYTWTKLDPTKQEDLDEIVAYWTCMDD-LGPTKIPVQDSQLFK 525
            LP S  M+MD +KR YSNAP   + G+RDF + + EF+ ++    FD + YS+W   Y YN +NKV+FM SNL+GGFVQR+D +RK AFG  + L + APF+++G WM +GQ   P+L+ NPDAEYY WTK+DP  +ED  ++ A+W C +D LG   I VQD+++FK
Sbjct:  281 LPPSS-MNMDDFKRFYSNAPTDPESGDRDFFAVMPEFWASK----FDKEGYSIWFCEYKYNDENKVSFMTSNLVGGFVQRADEVRKVAFGNMLILNEEAPFRIAGCWMIRGQSIQPLLDCNPDAEYYDWTKVDPASEEDRTKVGAFWCCYEDFLG---IKVQDAKMFK 440
[Close]
BLAST of mRNA_M-pyrifera_M_contig88191.20485.1 vs. uniprot
Match: A0A812VVM1_9DINO (Hypothetical protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812VVM1_9DINO)

HSP 1 Score: 144 bits (362), Expect = 3.420e-37
Identity = 74/154 (48.05%), Postives = 97/154 (62.99%), Query Frame = 1 
Query:   64 KRTYSNAPLKDDGERDFESAVREFFTAEEGKGFDPKCYSVWKGSYNYNSDNKVAFMVSNLIGGFVQRSDAIRKEAFGVHVSLGDAAPFQVSGIWMWKGQEPTPMLEANPDAEYYTWTKLDPTKQEDLDEIVAYWTCMDDL-GPTKIPVQDSQLF 522
            KR YSNAP   + ERD+ + +  FF       +DP+ YS+W   YN+N +N + F  SNL+ GF+QRSDAIRK AFG  + LGD APF+++G WM+ GQ    +LE NPDAEYYTWTKLD +     + +  YW  +D   G T   V DS+LF
Sbjct:  405 KRHYSNAPYDANRERDYYATIPPFFK----DIYDPEAYSIWTCDYNFNEENTMDFTTSNLVSGFIQRSDAIRKGAFGTMLILGDKAPFKITGCWMFHGQTNKEILEHNPDAEYYTWTKLDTSDPAVQERVAHYWCTVDKFEGET---VYDSKLF 551
[Close]
BLAST of mRNA_M-pyrifera_M_contig88191.20485.1 vs. uniprot
Match: A0A482UN19_9ARCH (Elongation factor 1-gamma family protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UN19_9ARCH)

HSP 1 Score: 137 bits (344), Expect = 7.840e-36
Identity = 77/174 (44.25%), Postives = 99/174 (56.90%), Query Frame = 1 
Query:    4 KKKGPFDGLPRSEFMSMDGWKRTYSNAPLKDDGERDFESAVREFFTAEEGKGFDPKCYSVWKGSYNYNSDNKVAFMVSNLIGGFVQRSDAIRKEAFGVHVSLGDAAPFQVSGIWMWKGQEPTPMLEANPDAEYYTWTKLDPTKQEDLDEIVAYWTCMDDLGPTKIPVQDSQLFK 525
            KK  PF  LP++  M MD WKRTYSN+       R    A  ++F A      D   YS+W   Y YN +NK  FM SNL+GG++QR+D IR+ AFGV   L +AAP++V G W+ +GQ+  PML+ NPDAEYY W KLD    E    +  YW     L   +  V DS+ FK
Sbjct:  201 KKADPFASLPKTT-MVMDEWKRTYSNS-------RPDYYASMDWFWA----NLDKSGYSLWICKYKYNEENKRDFMTSNLVGGYIQRTDEIRRHAFGVMYVLNNAAPYEVEGCWLMRGQDIQPMLDCNPDAEYYDWIKLDADNAEHRKLVGDYWCTQTTLNGKE--VYDSKCFK 360
[Close]
BLAST of mRNA_M-pyrifera_M_contig88191.20485.1 vs. uniprot
Match: A0A7R9UHZ1_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UHZ1_9STRA)

HSP 1 Score: 131 bits (329), Expect = 5.780e-33
Identity = 79/169 (46.75%), Postives = 101/169 (59.76%), Query Frame = 1 
Query:   46 MSMDGWKRTYSNAPLKDDGERDFESAVREFFTAEEGKGFDPKCYSVWKGSYNYNSDNKVAFMVSNLIGGFVQRSDAIRKEAFGVHVSLGDAAPFQ------VSGIWMWKGQEPTPMLEANPDAEYYTWTKLDPTKQEDLDEIVA-YWTCMDDLGPT--KIPVQDSQLFK 525
            MSMD WKR YSN          +++A+ EF+     K  D + +S+WK  Y YNSDNK  FM SNL  GF+QRS  IRK AFG  V  G A   +      VSG+W+ +GQE TPMLEANPDAEY+TWTKL+     +  ++V  +WT   D+G      PV DS++FK
Sbjct:  301 MSMDAWKREYSNCVT-------YDAAMEEFW-----KMLDREGWSLWKQEYQYNSDNKKLFMTSNLCSGFLQRSGEIRKWAFGTCVITGLAEDAEGGPDMSVSGLWLLRGQEITPMLEANPDAEYHTWTKLEDLDSAETQQLVKDFWTR--DVGELIEGRPVLDSKVFK 455
[Close]
BLAST of mRNA_M-pyrifera_M_contig88191.20485.1 vs. uniprot
Match: A0A7S2Y1Q3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1Q3_9STRA)

HSP 1 Score: 125 bits (313), Expect = 2.950e-31
Identity = 74/165 (44.85%), Postives = 99/165 (60.00%), Query Frame = 1 
Query:   37 SEFMSMDGWKRTYSNAPLKDDGERDFESAVREFFTAEEGKGFDPKCYSVWKGSYNYNSDNKVAFMVSNLIGGFVQRSDAIRKEAFGVHVSLGDAAPFQVSGIWMWKGQEPTPMLEANPDAEYYTWTKLDPTKQEDLDE--IVAYWTCMDDLGPTKIPVQDSQLFK 525
            SEF++ D WK+ YSN    D+       A+  F+     + FD + +S+W   YN+N +N V FMVSNL+ GFVQRS  +RK AFGV   +GD  PF V G+W+ +G    P+L+AN DAEYYTWTK+ PT   D D+  I   WT    +G  K  VQD ++FK
Sbjct:  216 SEFIN-DSWKKMYSNCTTYDE-------AMNYFW-----EKFDSEGWSLWDQRYNHNDENTVLFMVSNLVSGFVQRSGEVRKWAFGVMQIVGDG-PFDVCGVWLIRGDSIDPLLKANDDAEYYTWTKI-PTPVSDADKAKIFEMWTSETTVGGKK--VQDCKVFK 363
[Close]
BLAST of mRNA_M-pyrifera_M_contig88191.20485.1 vs. uniprot
Match: A0A7S1D9S9_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D9S9_CYCTE)

HSP 1 Score: 125 bits (315), Expect = 4.060e-31
Identity = 71/165 (43.03%), Postives = 97/165 (58.79%), Query Frame = 1 
Query:   46 MSMDGWKRTYSNAPLKDDGERDFESAVREFFTAEEGKGFDPKCYSVWKGSYNYNSDNKVAFMVSNLIGGFVQRSDAIRKEAFGVHVSLG-DAAPFQVSGIWMWKGQEPTPMLEANPDAEYYTWTKLDPTKQEDLDEIVA----YWTCMDDLGPTKIPVQDSQLFK 525
             SMD WK+TYSNAP        +++A+ EF+     K FD + +S+W   YNYN DNK  FM SN +GGF QR+D IR+ AFGV   LG +    ++ GIW+ +G     M+ AN DA +YTWTKL     +  DE+ A    YW   ++L     P+QDS++FK
Sbjct:  276 FSMDAWKKTYSNAPT-------YDAAMEEFW-----KTFDKEGWSLWLQVYNYNEDNKRIFMTSNAVGGFQQRTDEIRRWAFGVMDVLGTEETSLEIKGIWLLRGDTVQHMINANDDANWYTWTKLAGKDLDPSDEVKAQVKAYWCNENELEGK--PIQDSKVFK 426
[Close]
BLAST of mRNA_M-pyrifera_M_contig88191.20485.1 vs. uniprot
Match: W7TL25_9STRA (Elongation factor 1 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TL25_9STRA)

HSP 1 Score: 125 bits (314), Expect = 6.380e-31
Identity = 72/166 (43.37%), Postives = 99/166 (59.64%), Query Frame = 1 
Query:   37 SEFMSMDGWKRTYSNAPLKDDGERDFESAVREFFTAEEGKGFDPKCYSVWKGSYNYNSDNKVAFMVSNLIGGFVQRSDAIRKEAFGVHVSLGDAAP--FQVSGIWMWKGQEPTPMLEANPDAEYYTWTKLD-PTKQEDLDEIVAYWTCMDDLGPTKIPVQDSQLFK 525
            SEF+ MD WK+TYSNA       R ++ A+ EF+     K FD   YS+W  +Y YNS+    FM  NL+ GFVQR+D +RK AFG    LG+ AP   ++ G+W+ +GQ  + +  ANPDAE+YTWTK+  P   ED  ++  YW   D L    +PV D ++FK
Sbjct:  285 SEFV-MDTWKKTYSNA-------RSYDQAMDEFW-----KVFDSLGYSLWFCNYQYNSELTKLFMTCNLVSGFVQRTDELRKWAFGCMWILGEDAPGKMEIRGLWLMRGQSDSYIKSANPDAEFYTWTKVPTPVSDEDKKKVQEYWCSDDSLAG--LPVLDCKVFK 435
[Close]
BLAST of mRNA_M-pyrifera_M_contig88191.20485.1 vs. uniprot
Match: A0A1V9YXS1_9STRA (Elongation factor 1-gamma n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9YXS1_9STRA)

HSP 1 Score: 122 bits (306), Expect = 6.820e-30
Identity = 72/162 (44.44%), Postives = 89/162 (54.94%), Query Frame = 1 
Query:   46 MSMDGWKRTYSNA-PLKDDGERDFESAVREFFTAEEGKGFDPKCYSVWKGSYNYNSDNKVAFMVSNLIGGFVQRSDAIRKEAFGVHVSLG-DAAPFQVSGIWMWKGQEPTPMLEANPDAEYYTWTKLDPTKQEDLDEIVAYWTCMDDLGPTKIPVQDSQLFK 525
            M +D WK  YSN  PL         S   E+  A      D K YS W   YNYN +NK  FM  N +GGF+QRSDA+RK +FGV   LG +    ++ G WM++GQ    MLEANPDAEYYTWTK++         I AYW   DDL     P+ D ++FK
Sbjct:  268 MKIDDWKVCYSNTKPL---------SKAMEWLWA----NVDLKDYSFWFMKYNYNEENKKMFMTCNAVGGFIQRSDAMRKFSFGVMDVLGAEGGLIEIVGCWMFRGQSVEHMLEANPDAEYYTWTKVENLDDATKARIAAYWCNEDDLEGK--PIADGKVFK 414
[Close]
BLAST of mRNA_M-pyrifera_M_contig88191.20485.1 vs. uniprot
Match: A0A1V9Y4Z6_9STRA (Elongation factor 1-gamma (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Y4Z6_9STRA)

HSP 1 Score: 116 bits (291), Expect = 1.440e-29
Identity = 70/162 (43.21%), Postives = 89/162 (54.94%), Query Frame = 1 
Query:   46 MSMDGWKRTYSNA-PLKDDGERDFESAVREFFTAEEGKGFDPKCYSVWKGSYNYNSDNKVAFMVSNLIGGFVQRSDAIRKEAFGVHVSLGDAAPF-QVSGIWMWKGQEPTPMLEANPDAEYYTWTKLDPTKQEDLDEIVAYWTCMDDLGPTKIPVQDSQLFK 525
            M +D WK  YSN  PL         S   E+      +  D K YS W   YNYN +NK  FM  N +GGF+QRSDA+RK AFGV   +G+     ++ G WM++GQ    ML+ANPDAEYYTWTK++         I AY+   DDL   KI   D ++FK
Sbjct:   52 MKIDDWKVCYSNTKPL---------SKAMEYLW----QNVDLKDYSFWFMKYNYNDENKKMFMTCNAVGGFIQRSDAMRKFAFGVMDVVGEEGGLIEIVGCWMFRGQSVEYMLDANPDAEYYTWTKVETLDDATKARIAAYFCNEDDLEGKKIA--DGKVFK 198
[Close]
BLAST of mRNA_M-pyrifera_M_contig88191.20485.1 vs. uniprot
Match: A0A7S3XWT6_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XWT6_HETAK)

HSP 1 Score: 121 bits (304), Expect = 1.740e-29
Identity = 69/161 (42.86%), Postives = 94/161 (58.39%), Query Frame = 1 
Query:   46 MSMDGWKRTYSNAPLKDDGERDFESAVREFFTAEEGKGFDPKCYSVWKGSYNYNSDNKVAFMVSNLIGGFVQRSDAIRKEAFGVHVSLGDAAPFQVSGIWMWKGQEPTPMLEANPDAEYYTWTKLD-PTKQEDLDEIVAYWTCMDDLGPTKIPVQDSQLFK 525
             + D WK+ YSN          F++A+  F+       FD + +S+WK +YNYN++N V FM SNL+ GFVQRS  IRK  FGV   +G+  PF+V G+W+ +GQE  P+L+AN DAEYYTWTK+  P    D   I   W     +   KI  QD ++FK
Sbjct:  290 FNNDTWKKEYSNCTS-------FDAAMATFWEM-----FDAEGWSLWKCTYNYNAENTVMFMTSNLVSGFVQRSGEIRKWGFGVMQIVGEG-PFEVVGVWLMRGQEIKPLLDANDDAEYYTWTKIAAPVSDADKAMISEMWCSETTIEGKKI--QDCKVFK 435
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig88191.20485.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8CRJ1_CAFRO4.700e-4650.00Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A812VVM1_9DINO3.420e-3748.05Hypothetical protein (Fragment) n=1 Tax=Symbiodini... [more]
A0A482UN19_9ARCH7.840e-3644.25Elongation factor 1-gamma family protein n=1 Tax=a... [more]
A0A7R9UHZ1_9STRA5.780e-3346.75Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2Y1Q3_9STRA2.950e-3144.85Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S1D9S9_CYCTE4.060e-3143.03Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
W7TL25_9STRA6.380e-3143.37Elongation factor 1 n=2 Tax=Monodopsidaceae TaxID=... [more]
A0A1V9YXS1_9STRA6.820e-3044.44Elongation factor 1-gamma n=3 Tax=Saprolegniaceae ... [more]
A0A1V9Y4Z6_9STRA1.440e-2943.21Elongation factor 1-gamma (Fragment) n=1 Tax=Thrau... [more]
A0A7S3XWT6_HETAK1.740e-2942.86Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig88191contigM-pyrifera_M_contig88191:170..697 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score128.6
Seed ortholog evalue2.8e-27
Seed eggNOG ortholog112098.XP_008605170.1
Preferred nameEEF1G
KEGG rclassRC00055,RC00523
KEGG koko:K01872,ko:K01873,ko:K03233,ko:K15439
KEGG ReactionR03038,R03665
KEGG Pathwayko00970,ko05134,map00970,map05134
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryother localisation
GOsGO:0001047,GO:0001067,GO:0002181,GO:0002182,GO:0003674,GO:0003676,GO:0003677,GO:0003700,GO:0003723,GO:0003746,GO:0003824,GO:0004364,GO:0004812,GO:0004832,GO:0005085,GO:0005488,GO:0005507,GO:0005509,GO:0005515,GO:0005543,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005773,GO:0005829,GO:0005840,GO:0005853,GO:0005886,GO:0005911,GO:0006082,GO:0006139,GO:0006355,GO:0006357,GO:0006399,GO:0006412,GO:0006414,GO:0006417,GO:0006418,GO:0006438,GO:0006449,GO:0006518,GO:0006520,GO:0006575,GO:0006725,GO:0006749,GO:0006790,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0008289,GO:0009058,GO:0009059,GO:0009506,GO:0009605,GO:0009607,GO:0009615,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010035,GO:0010038,GO:0010043,GO:0010467,GO:0010468,GO:0010494,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0016020,GO:0016070,GO:0016740,GO:0016765,GO:0016874,GO:0016875,GO:0019219,GO:0019222,GO:0019538,GO:0019752,GO:0019899,GO:0022613,GO:0030054,GO:0030312,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032268,GO:0032991,GO:0034248,GO:0034641,GO:0034645,GO:0034660,GO:0035770,GO:0036464,GO:0042221,GO:0042254,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043244,GO:0043436,GO:0043603,GO:0043604,GO:0044085,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0046686,GO:0046872,GO:0046914,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051020,GO:0051128,GO:0051171,GO:0051173,GO:0051186,GO:0051246,GO:0051252,GO:0051254,GO:0051704,GO:0051707,GO:0055044,GO:0060255,GO:0065007,GO:0065009,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0090304,GO:0097159,GO:0098772,GO:0140098,GO:0140101,GO:0140110,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1902680,GO:1903506,GO:1903508,GO:1990904,GO:2000112,GO:2001141
EggNOG free text desc.translation elongation factor activity
EggNOG OGsCOG0625@1,KOG0867@2759,KOG1627@1,KOG1627@2759
EC6.1.1.7,6.1.1.9
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03012,ko03016,ko03019
Exons1
Model size528
Cds size528
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816791.5107694-CDS-M-pyrifera_M_contig88191:169..6971622816791.5107694-CDS-M-pyrifera_M_contig88191:169..697Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88191 170..697 +
1692278180.6187904-CDS-M-pyrifera_M_contig88191:169..6971692278180.6187904-CDS-M-pyrifera_M_contig88191:169..697Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88191 170..697 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig88191.20485.1prot_M-pyrifera_M_contig88191.20485.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig88191 170..697 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig88191.20485.1

>prot_M-pyrifera_M_contig88191.20485.1 ID=prot_M-pyrifera_M_contig88191.20485.1|Name=mRNA_M-pyrifera_M_contig88191.20485.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=176bp
AKKKGPFDGLPRSEFMSMDGWKRTYSNAPLKDDGERDFESAVREFFTAEE
GKGFDPKCYSVWKGSYNYNSDNKVAFMVSNLIGGFVQRSDAIRKEAFGVH
VSLGDAAPFQVSGIWMWKGQEPTPMLEANPDAEYYTWTKLDPTKQEDLDE
IVAYWTCMDDLGPTKIPVQDSQLFK*
back to top

mRNA from alignment at M-pyrifera_M_contig88191:170..697+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig88191.20485.1 ID=mRNA_M-pyrifera_M_contig88191.20485.1|Name=mRNA_M-pyrifera_M_contig88191.20485.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=528bp|location=Sequence derived from alignment at M-pyrifera_M_contig88191:170..697+ (Macrocystis pyrifera P11B4 male)
GCCAAGAAGAAGGGACCATTCGATGGTCTTCCACGCAGTGAATTCATGAG
CATGGATGGATGGAAGCGCACCTACTCCAACGCCCCATTGAAGGATGATG
GAGAACGTGACTTCGAGTCTGCTGTCCGTGAATTCTTCACCGCAGAGGAG
GGCAAGGGATTCGACCCAAAGTGCTACTCCGTCTGGAAGGGTTCTTACAA
CTACAACTCGGACAACAAGGTCGCCTTCATGGTGTCCAACCTCATCGGTG
GTTTCGTCCAACGTTCCGATGCGATCCGCAAGGAAGCATTCGGTGTCCAC
GTGTCTCTCGGTGACGCAGCTCCATTCCAAGTGAGCGGAATCTGGATGTG
GAAGGGACAAGAGCCAACTCCTATGCTCGAAGCAAACCCAGATGCTGAGT
ACTACACTTGGACCAAGCTTGACCCGACCAAGCAAGAAGACCTCGATGAA
ATCGTCGCCTACTGGACTTGCATGGATGACCTTGGACCAACCAAGATCCC
AGTCCAAGACTCCCAACTCTTCAAGTAA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig88191:170..697+

>mRNA_M-pyrifera_M_contig88191.20485.1 ID=mRNA_M-pyrifera_M_contig88191.20485.1|Name=mRNA_M-pyrifera_M_contig88191.20485.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1056bp|location=Sequence derived from alignment at M-pyrifera_M_contig88191:170..697+ (Macrocystis pyrifera P11B4 male)
GCCAAGAAGAAGGGACCATTCGATGGTCTTCCACGCAGTGAATTCATGAG
CATGGATGGATGGAAGCGCACCTACTCCAACGCCCCATTGAAGGATGATG
GAGAACGTGACTTCGAGTCTGCTGTCCGTGAATTCTTCACCGCAGAGGAG
GGCAAGGGATTCGACCCAAAGTGCTACTCCGTCTGGAAGGGTTCTTACAA
CTACAACTCGGACAACAAGGTCGCCTTCATGGTGTCCAACCTCATCGGTG
GTTTCGTCCAACGTTCCGATGCGATCCGCAAGGAAGCATTCGGTGTCCAC
GTGTCTCTCGGTGACGCAGCTCCATTCCAAGTGAGCGGAATCTGGATGTG
GAAGGGACAAGAGCCAACTCCTATGCTCGAAGCAAACCCAGATGCTGAGT
ACTACACTTGGACCAAGCTTGACCCGACCAAGCAAGAAGACCTCGATGAA
ATCGTCGCCTACTGGACTTGCATGGATGACCTTGGACCAACCAAGATCCC
AGTCCAAGACTCCCAACTCTTCAAGTAAGCCAAGAAGAAGGGACCATTCG
ATGGTCTTCCACGCAGTGAATTCATGAGCATGGATGGATGGAAGCGCACC
TACTCCAACGCCCCATTGAAGGATGATGGAGAACGTGACTTCGAGTCTGC
TGTCCGTGAATTCTTCACCGCAGAGGAGGGCAAGGGATTCGACCCAAAGT
GCTACTCCGTCTGGAAGGGTTCTTACAACTACAACTCGGACAACAAGGTC
GCCTTCATGGTGTCCAACCTCATCGGTGGTTTCGTCCAACGTTCCGATGC
GATCCGCAAGGAAGCATTCGGTGTCCACGTGTCTCTCGGTGACGCAGCTC
CATTCCAAGTGAGCGGAATCTGGATGTGGAAGGGACAAGAGCCAACTCCT
ATGCTCGAAGCAAACCCAGATGCTGAGTACTACACTTGGACCAAGCTTGA
CCCGACCAAGCAAGAAGACCTCGATGAAATCGTCGCCTACTGGACTTGCA
TGGATGACCTTGGACCAACCAAGATCCCAGTCCAAGACTCCCAACTCTTC
AAGTAA
back to top