mRNA_M-pyrifera_M_contig88187.20484.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig88187.20484.1
Unique NamemRNA_M-pyrifera_M_contig88187.20484.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig88187.20484.1 vs. uniprot
Match: A0A518BKH5_9BACT (Collagen triple helix repeat (20 copies) n=1 Tax=Planctomycetes bacterium Pla133 TaxID=2528011 RepID=A0A518BKH5_9BACT)

HSP 1 Score: 59.7 bits (143), Expect = 3.780e-7
Identity = 37/73 (50.68%), Postives = 48/73 (65.75%), Query Frame = 1 
Query:  127 FVSLRVGTTPELSPRLQLGQVARALRADSA-GEVATALDVPGAAIHPNSVSVGGALVVDSQGRWLGPA--VGP 336
            FV+L+VGT PE+SPR+++G V  AL AD+  G+           I PNSVSVGGA V+DS G+W+G    VGP
Sbjct:  130 FVALQVGTDPEMSPRVRVGSVPFALVADNVVGD-----------ITPNSVSVGGATVIDSTGQWVGSGGIVGP 191
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BLAST of mRNA_M-pyrifera_M_contig88187.20484.1 vs. uniprot
Match: A0A150PP15_SORCE (Uncharacterized protein n=1 Tax=Sorangium cellulosum TaxID=56 RepID=A0A150PP15_SORCE)

HSP 1 Score: 53.1 bits (126), Expect = 5.080e-5
Identity = 40/113 (35.40%), Postives = 62/113 (54.87%), Query Frame = 1 
Query:    4 AVD-PVPLYTEQQLSINVPDGRLNLDLDSHI-VNDLLEHNDSVFVSLRVGTTPELSPRLQLGQVARALRADS-AGEVATALDVPGAAIHPNSVSVGGALVVDSQGRWLGPAVG 333
            AVD PVP+++E   +I    G  ++DL     V+  +    + ++ + VG  PE+ PR ++  V  AL+A + +G+           I PNS+SVGG LV+DS G W+G  VG
Sbjct:   56 AVDAPVPIWSEVH-TITFDHGYFSVDLGEVAPVDKPVLDGAARYLGITVGNDPEMVPRARVASVPYALQASNVSGD-----------ITPNSISVGGQLVIDSSGLWVGQPVG 156
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BLAST of mRNA_M-pyrifera_M_contig88187.20484.1 vs. uniprot
Match: A0A2F0AQ43_9DELT (Uncharacterized protein (Fragment) n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A2F0AQ43_9DELT)

HSP 1 Score: 52.8 bits (125), Expect = 8.710e-5
Identity = 38/106 (35.85%), Postives = 58/106 (54.72%), Query Frame = 1 
Query:   22 LYTEQQLSINVPDGR--LNLDLDSHIVNDLLEHNDSVFVSLRVGTTPELSPRLQLGQVARALRADSAGEVATALDVPGAAIHPNSVSVGGALVVDSQGRWLGPAVG 333
            L+ E   ++ V  G   +++  + ++ NDL    D +F S+ V    E+ PR+ LGQV  A  ++       AL+V G  I P SVS+GG +V+DS GRW+G   G
Sbjct:   61 LFEELHQNVEVESGWYFIHVGANRNLSNDLFLR-DGLFFSVAVDGGQEILPRISLGQVPAAFISN------VALNVIGD-IEPRSVSIGGQVVIDSTGRWVGAPAG 158
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BLAST of mRNA_M-pyrifera_M_contig88187.20484.1 vs. uniprot
Match: A9GWY4_SORC5 (Procollagen, type XI, alpha n=1 Tax=Sorangium cellulosum (strain So ce56) TaxID=448385 RepID=A9GWY4_SORC5)

HSP 1 Score: 52.4 bits (124), Expect = 9.400e-5
Identity = 36/109 (33.03%), Postives = 58/109 (53.21%), Query Frame = 1 
Query:   13 PVPLYTEQQLSINVPDGRLNLDLDSHIVNDLLEHNDSV-FVSLRVGTTPELSPRLQLGQVARALRADS-AGEVATALDVPGAAIHPNSVSVGGALVVDSQGRWLGPAVG 333
            PVP+++E   +I    G  ++DL      D    + +  ++ + VG  PE+ PR ++  V  AL+A + AG+           I PNS+S+GG LV+DS G W+G  +G
Sbjct:   60 PVPVWSELH-TITFDQGYFSVDLGELAPVDKPVFDGAARYLGITVGDDPEMVPRAKIASVPYALQASNVAGD-----------ITPNSISIGGRLVIDSSGVWVGDPIG 156
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig88187.20484.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A518BKH5_9BACT3.780e-750.68Collagen triple helix repeat (20 copies) n=1 Tax=P... [more]
A0A150PP15_SORCE5.080e-535.40Uncharacterized protein n=1 Tax=Sorangium cellulos... [more]
A0A2F0AQ43_9DELT8.710e-535.85Uncharacterized protein (Fragment) n=1 Tax=Myxococ... [more]
A9GWY4_SORC59.400e-533.03Procollagen, type XI, alpha n=1 Tax=Sorangium cell... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig88187contigM-pyrifera_M_contig88187:267..821 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size555
Cds size555
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816791.4777544-CDS-M-pyrifera_M_contig88187:266..8211622816791.4777544-CDS-M-pyrifera_M_contig88187:266..821Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88187 267..821 -
1692278180.6076283-CDS-M-pyrifera_M_contig88187:266..8211692278180.6076283-CDS-M-pyrifera_M_contig88187:266..821Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88187 267..821 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig88187.20484.1prot_M-pyrifera_M_contig88187.20484.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig88187 267..821 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig88187.20484.1

>prot_M-pyrifera_M_contig88187.20484.1 ID=prot_M-pyrifera_M_contig88187.20484.1|Name=mRNA_M-pyrifera_M_contig88187.20484.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=185bp
TAVDPVPLYTEQQLSINVPDGRLNLDLDSHIVNDLLEHNDSVFVSLRVGT
TPELSPRLQLGQVARALRADSAGEVATALDVPGAAIHPNSVSVGGALVVD
SQGRWLGPAVGPIGPEGPVGPQGPQGPANDVVGPQGPVGPMGLQGLTGPA
GPAGPQGAQGAMGAEGPEGPKGPKGPAGPQGPAGS
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mRNA from alignment at M-pyrifera_M_contig88187:267..821-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig88187.20484.1 ID=mRNA_M-pyrifera_M_contig88187.20484.1|Name=mRNA_M-pyrifera_M_contig88187.20484.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=555bp|location=Sequence derived from alignment at M-pyrifera_M_contig88187:267..821- (Macrocystis pyrifera P11B4 male)
ACGGCGGTCGATCCGGTGCCGCTGTACACGGAGCAGCAACTCTCCATCAA
CGTGCCGGACGGGCGTCTGAACCTGGACCTCGACTCCCACATCGTGAACG
ACCTCCTGGAGCACAACGACTCGGTCTTCGTGAGCTTGAGGGTCGGGACG
ACCCCCGAGTTGTCGCCCCGGCTGCAGCTCGGCCAGGTCGCGCGGGCGCT
GCGGGCCGACTCGGCGGGTGAGGTCGCCACCGCCCTGGACGTCCCCGGGG
CGGCGATCCACCCCAACAGCGTCTCGGTGGGCGGGGCCTTGGTCGTGGAC
TCGCAGGGGCGCTGGCTCGGGCCTGCCGTCGGACCCATCGGTCCGGAGGG
CCCCGTCGGCCCGCAGGGTCCCCAGGGGCCTGCCAACGACGTGGTCGGCC
CCCAGGGGCCGGTCGGCCCGATGGGGCTCCAAGGTCTTACGGGTCCCGCC
GGTCCGGCCGGCCCCCAAGGGGCGCAGGGCGCCATGGGCGCCGAGGGGCC
GGAGGGTCCCAAGGGGCCGAAGGGACCCGCGGGACCGCAAGGCCCCGCCG
GCTCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig88187:267..821-

>mRNA_M-pyrifera_M_contig88187.20484.1 ID=mRNA_M-pyrifera_M_contig88187.20484.1|Name=mRNA_M-pyrifera_M_contig88187.20484.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1110bp|location=Sequence derived from alignment at M-pyrifera_M_contig88187:267..821- (Macrocystis pyrifera P11B4 male)
ACGGCGGTCGATCCGGTGCCGCTGTACACGGAGCAGCAACTCTCCATCAA
CGTGCCGGACGGGCGTCTGAACCTGGACCTCGACTCCCACATCGTGAACG
ACCTCCTGGAGCACAACGACTCGGTCTTCGTGAGCTTGAGGGTCGGGACG
ACCCCCGAGTTGTCGCCCCGGCTGCAGCTCGGCCAGGTCGCGCGGGCGCT
GCGGGCCGACTCGGCGGGTGAGGTCGCCACCGCCCTGGACGTCCCCGGGG
CGGCGATCCACCCCAACAGCGTCTCGGTGGGCGGGGCCTTGGTCGTGGAC
TCGCAGGGGCGCTGGCTCGGGCCTGCCGTCGGACCCATCGGTCCGGAGGG
CCCCGTCGGCCCGCAGGGTCCCCAGGGGCCTGCCAACGACGTGGTCGGCC
CCCAGGGGCCGGTCGGCCCGATGGGGCTCCAAGGTCTTACGGGTCCCGCC
GGTCCGGCCGGCCCCCAAGGGGCGCAGGGCGCCATGGGCGCCGAGGGGCC
GGAGGGTCCCAAGGGGCCGAAGGGACCCGCGGGACCGCAAGGCCCCGCCG
GCTCCACGGCGGTCGATCCGGTGCCGCTGTACACGGAGCAGCAACTCTCC
ATCAACGTGCCGGACGGGCGTCTGAACCTGGACCTCGACTCCCACATCGT
GAACGACCTCCTGGAGCACAACGACTCGGTCTTCGTGAGCTTGAGGGTCG
GGACGACCCCCGAGTTGTCGCCCCGGCTGCAGCTCGGCCAGGTCGCGCGG
GCGCTGCGGGCCGACTCGGCGGGTGAGGTCGCCACCGCCCTGGACGTCCC
CGGGGCGGCGATCCACCCCAACAGCGTCTCGGTGGGCGGGGCCTTGGTCG
TGGACTCGCAGGGGCGCTGGCTCGGGCCTGCCGTCGGACCCATCGGTCCG
GAGGGCCCCGTCGGCCCGCAGGGTCCCCAGGGGCCTGCCAACGACGTGGT
CGGCCCCCAGGGGCCGGTCGGCCCGATGGGGCTCCAAGGTCTTACGGGTC
CCGCCGGTCCGGCCGGCCCCCAAGGGGCGCAGGGCGCCATGGGCGCCGAG
GGGCCGGAGGGTCCCAAGGGGCCGAAGGGACCCGCGGGACCGCAAGGCCC
CGCCGGCTCC
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