mRNA_M-pyrifera_M_contig88185.20483.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig88185.20483.1
Unique NamemRNA_M-pyrifera_M_contig88185.20483.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig88185.20483.1 vs. uniprot
Match: A0A518FNH8_9PLAN (Ribonuclease R n=9 Tax=Gimesia TaxID=1649453 RepID=A0A518FNH8_9PLAN)

HSP 1 Score: 501 bits (1290), Expect = 2.370e-171
Identity = 252/274 (91.97%), Postives = 264/274 (96.35%), Query Frame = 1
Query:    1 EFGIPMDFPDEVLEAAREQASLFDETKLGNRRDLTNETIVTIDPADARDFDDAISLTQNERGHWVLGVHIADAAHFVKEGSVLDREARRRGTSVYLPGQVIPMLPEIISNGLASLQQDQVRFTKSAFIEFTSDGVPVHTEFVNSAIRVKKRFAYEQVLPIIQERDEEGDRIPRDVRELLKNMHHLAMMLRKRRFAAGALELHLSEVRLTFDDKHRVSGAVEREHDESHQIIEEFMLAANIAVAEGLNDRGLRFLRRVHPSPDYQRQVEFAEFVS 822
            EFGIPMDFPDEVLEAAREQASLFDET+LGNRRDLT ETIVTIDPADARDFDDAISL QNERGHWVLGVHIAD AHFVKEGS LDREARRRGTSVYLPG+VIPMLPE+ISNGLASLQ+ QVRFTKSAFIEFT+DGVPVHTEFVNSAIRV KRFAYEQVLPI+Q RDEEGDR+  ++RELLKNMHHLAMMLRKRRFA GALELHLSEVRLTFDDKHRVSGAVEREHDESHQIIEEFMLAANIAVAEGLNDRGLRFLRRVHPSPD+QRQ+EFAEFV+
Sbjct:  225 EFGIPMDFPDEVLEAAREQASLFDETRLGNRRDLTGETIVTIDPADARDFDDAISLKQNERGHWVLGVHIADVAHFVKEGSTLDREARRRGTSVYLPGRVIPMLPEVISNGLASLQEGQVRFTKSAFIEFTADGVPVHTEFVNSAIRVSKRFAYEQVLPIVQGRDEEGDRVSAEIRELLKNMHHLAMMLRKRRFAGGALELHLSEVRLTFDDKHRVSGAVEREHDESHQIIEEFMLAANIAVAEGLNDRGLRFLRRVHPSPDHQRQIEFAEFVN 498          
BLAST of mRNA_M-pyrifera_M_contig88185.20483.1 vs. uniprot
Match: A0A518I8A9_9PLAN (Ribonuclease R n=2 Tax=Gimesia TaxID=1649453 RepID=A0A518I8A9_9PLAN)

HSP 1 Score: 462 bits (1189), Expect = 3.370e-156
Identity = 234/274 (85.40%), Postives = 254/274 (92.70%), Query Frame = 1
Query:    1 EFGIPMDFPDEVLEAAREQASLFDETKLGNRRDLTNETIVTIDPADARDFDDAISLTQNERGHWVLGVHIADAAHFVKEGSVLDREARRRGTSVYLPGQVIPMLPEIISNGLASLQQDQVRFTKSAFIEFTSDGVPVHTEFVNSAIRVKKRFAYEQVLPIIQERDEEGDRIPRDVRELLKNMHHLAMMLRKRRFAAGALELHLSEVRLTFDDKHRVSGAVEREHDESHQIIEEFMLAANIAVAEGLNDRGLRFLRRVHPSPDYQRQVEFAEFVS 822
            EFGIPM+FP+EVL  AREQASLFDE KLGNRRDLT ETIVTIDPADARDFDDAISLT+NE+GHW+LGVHIAD AHFVKEGS+LDREA+RRGTSVYLPGQVIPMLPEIISNGLASLQ+ QVRFTKSAFIEFT++GVPVHTEF NSA++V +RFAYEQVLPIIQ RD+EG  +  +VRELLKNMHHLAM+LR RRFAAGALELHLSEVRLTFDDKHRVSGAVEREHDESHQIIEEFMLAANI+VAE  NDR LRFLRRVHPSP+  RQV FAEFV+
Sbjct:  225 EFGIPMEFPEEVLIEAREQASLFDEAKLGNRRDLTKETIVTIDPADARDFDDAISLTRNEKGHWLLGVHIADVAHFVKEGSILDREAKRRGTSVYLPGQVIPMLPEIISNGLASLQEGQVRFTKSAFIEFTAEGVPVHTEFANSAVQVTQRFAYEQVLPIIQGRDDEGKDVSAEVRELLKNMHHLAMILRGRRFAAGALELHLSEVRLTFDDKHRVSGAVEREHDESHQIIEEFMLAANISVAEAFNDRKLRFLRRVHPSPELPRQVAFAEFVN 498          
BLAST of mRNA_M-pyrifera_M_contig88185.20483.1 vs. uniprot
Match: A0A517W158_9PLAN (Ribonuclease R n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517W158_9PLAN)

HSP 1 Score: 446 bits (1147), Expect = 6.700e-150
Identity = 223/274 (81.39%), Postives = 248/274 (90.51%), Query Frame = 1
Query:    1 EFGIPMDFPDEVLEAAREQASLFDETKLGNRRDLTNETIVTIDPADARDFDDAISLTQNERGHWVLGVHIADAAHFVKEGSVLDREARRRGTSVYLPGQVIPMLPEIISNGLASLQQDQVRFTKSAFIEFTSDGVPVHTEFVNSAIRVKKRFAYEQVLPIIQERDEEGDRIPRDVRELLKNMHHLAMMLRKRRFAAGALELHLSEVRLTFDDKHRVSGAVEREHDESHQIIEEFMLAANIAVAEGLNDRGLRFLRRVHPSPDYQRQVEFAEFVS 822
            EFGIPMDFP+EVLEAAREQASLFDE K G+RRDLT ETIVTIDP DARDFDDAISL+++ERGHW+LGVHIAD AHFVKEGS LDREA+ RGTSVYLPG+VIPMLPE+ISNGLASLQ+ QVRFTKSA IEFT++G+PVHTEF NS I+V +RFAYEQV+PI+Q RD+EG  +   VR LLKNMHHLAM+LR RRF+AGALELHLSEVRLTFD KHRVSGAVEREHDESHQIIEEFMLAANIAVAE  NDRGLRFLRRVHPSP+  RQ+ FA+FV+
Sbjct:  225 EFGIPMDFPEEVLEAAREQASLFDEKKWGDRRDLTKETIVTIDPVDARDFDDAISLSRDERGHWLLGVHIADVAHFVKEGSTLDREAKNRGTSVYLPGRVIPMLPEVISNGLASLQEGQVRFTKSALIEFTAEGIPVHTEFANSVIKVTQRFAYEQVMPIVQGRDQEGGNVSTPVRSLLKNMHHLAMILRGRRFSAGALELHLSEVRLTFDAKHRVSGAVEREHDESHQIIEEFMLAANIAVAEAFNDRGLRFLRRVHPSPELPRQLAFADFVN 498          
BLAST of mRNA_M-pyrifera_M_contig88185.20483.1 vs. uniprot
Match: A0A2E2CBC2_9PLAN (Ribonuclease R n=12 Tax=Planctomycetaceae TaxID=126 RepID=A0A2E2CBC2_9PLAN)

HSP 1 Score: 444 bits (1142), Expect = 3.580e-149
Identity = 220/274 (80.29%), Postives = 251/274 (91.61%), Query Frame = 1
Query:    1 EFGIPMDFPDEVLEAAREQASLFDETKLGNRRDLTNETIVTIDPADARDFDDAISLTQNERGHWVLGVHIADAAHFVKEGSVLDREARRRGTSVYLPGQVIPMLPEIISNGLASLQQDQVRFTKSAFIEFTSDGVPVHTEFVNSAIRVKKRFAYEQVLPIIQERDEEGDRIPRDVRELLKNMHHLAMMLRKRRFAAGALELHLSEVRLTFDDKHRVSGAVEREHDESHQIIEEFMLAANIAVAEGLNDRGLRFLRRVHPSPDYQRQVEFAEFVS 822
            EFGIP+DFP+EVL  AREQASLFDETKLG RRDLT ETIVTIDPADARDFDDAISLT+NE+GHW+LGVHIAD AHFVKEGS+LDREA+RRGTSVYLPG+VIPMLPEIISNGLASLQ+ QVRFTKSAFIEFT +G+PVHTEF N+AI V +RFAYE+VLPI+Q RDE+G ++ ++VRELLKNM++LAM LR RRF+AGALELHL+EV+LTFDDKHRV+GAVEREHDESHQIIEEFMLAANI++AE  NDR LRFLRRVHP P+  RQ+ FAEF +
Sbjct:  225 EFGIPLDFPEEVLTEAREQASLFDETKLGKRRDLTKETIVTIDPADARDFDDAISLTRNEKGHWLLGVHIADVAHFVKEGSLLDREAKRRGTSVYLPGRVIPMLPEIISNGLASLQEGQVRFTKSAFIEFTPEGIPVHTEFANTAINVTQRFAYEEVLPIVQGRDEQGKKVSQEVRELLKNMYNLAMKLRGRRFSAGALELHLAEVKLTFDDKHRVTGAVEREHDESHQIIEEFMLAANISIAEAFNDRELRFLRRVHPKPEMPRQLAFAEFAN 498          
BLAST of mRNA_M-pyrifera_M_contig88185.20483.1 vs. uniprot
Match: A0A3B1DQQ3_9ZZZZ (Exoribonuclease II (Fragment) n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B1DQQ3_9ZZZZ)

HSP 1 Score: 350 bits (898), Expect = 4.540e-113
Identity = 178/274 (64.96%), Postives = 221/274 (80.66%), Query Frame = 1
Query:    1 EFGIPMDFPDEVLEAAREQASLFDETKLGNRRDLTNETIVTIDPADARDFDDAISLTQNERGHWVLGVHIADAAHFVKEGSVLDREARRRGTSVYLPGQVIPMLPEIISNGLASLQQDQVRFTKSAFIEFTSDGVPVHTEFVNSAIRVKKRFAYEQVLPIIQERDE-EGDRIPRDVRELLKNMHHLAMMLRKRRFAAGALELHLSEVRLTFDDKHRVSGAVEREHDESHQIIEEFMLAANIAVAEGLNDRGLRFLRRVHPSPDYQRQVEFAEFV 819
            EFG+P +FPD+VLE A  QA  FDET   +R DLT ETIVTIDP DARDFDDAISL +N +GHWVLGVHIAD AHFV  G++LD EA+ RGTS+YLPG+VIPMLPE+ISNGLASLQ+ +VR+TK+ +IE T++GVPVHTEFVNSAI+V +RFAYE+V+PI++  D  +   +   VR+LLK+M+ LAM LRKRRFA+GALEL L EV+L FD  +RV+GA E +HDESHQ+IEEFMLAAN+AVA   +DR + FLRR H  PDY++   F+EF+
Sbjct:  220 EFGLPQEFPDDVLEEASLQAEQFDETVPKDRTDLTKETIVTIDPVDARDFDDAISLKKNSKGHWVLGVHIADVAHFVPSGTLLDTEAKSRGTSIYLPGRVIPMLPEVISNGLASLQKGKVRYTKTVYIEMTAEGVPVHTEFVNSAIKVTQRFAYEEVMPIVKAPDIFKSKEVSLKVRKLLKDMYSLAMTLRKRRFASGALELSLPEVKLEFDKDNRVTGAHEADHDESHQMIEEFMLAANVAVAREFSDRDIVFLRRAHGEPDYRKLKLFSEFI 493          
BLAST of mRNA_M-pyrifera_M_contig88185.20483.1 vs. uniprot
Match: A0A7C4LL91_9PLAN (Ribonuclease R n=1 Tax=Schlesneria paludicola TaxID=360056 RepID=A0A7C4LL91_9PLAN)

HSP 1 Score: 343 bits (880), Expect = 2.850e-110
Identity = 180/273 (65.93%), Postives = 207/273 (75.82%), Query Frame = 1
Query:    1 EFGIPMDFPDEVLEAAREQASLFDETKLGNRRDLTNETIVTIDPADARDFDDAISLTQNERGHWVLGVHIADAAHFVKEGSVLDREARRRGTSVYLPGQVIPMLPEIISNGLASLQQDQVRFTKSAFIEFTSDGVPVHTEFVNSAIRVKKRFAYEQVLPIIQERDEEGDRIPRDVRELLKNMHHLAMMLRKRRFAAGALELHLSEVRLTFDDKHRVSGAVEREHDESHQIIEEFMLAANIAVAEGLNDRGLRFLRRVHPSPDYQRQVEFAEFV 819
            EF +P +FP+ VLE AR QA  FD   L  R DLT ETI+TIDP DARDFDDAISLTQ+  GHW LGVHIAD AHFV  GS +DREARRRG SVYLP +V+PMLPE++SNGLASLQQD VR+TKS FI+FT DGVP HTE  NSAI+V +RFAYE+VLPI+Q   + G RIP  VR LL+ MH LAM+LRKRRFA GAL+L L EV+L  D   +V GA    HDESHQIIEEFMLAANIAVA+ L  RGL +L RVH  PD ++  +  EFV
Sbjct:  231 EFQLPDEFPEAVLEEARAQAERFDPDDLRGRLDLTGETIITIDPVDARDFDDAISLTQSPDGHWRLGVHIADVAHFVPSGSDMDREARRRGNSVYLPDRVLPMLPEVLSNGLASLQQDHVRYTKSVFIDFTPDGVPTHTELANSAIKVTRRFAYEEVLPILQHPSKHGRRIPAPVRALLERMHRLAMILRKRRFARGALDLQLPEVKLDLDKDGQVCGAHRVLHDESHQIIEEFMLAANIAVAQTLARRGLAYLHRVHAPPDEKKLRDLGEFV 503          
BLAST of mRNA_M-pyrifera_M_contig88185.20483.1 vs. uniprot
Match: A0A517ZFY1_9PLAN (Ribonuclease R n=1 Tax=Maioricimonas rarisocia TaxID=2528026 RepID=A0A517ZFY1_9PLAN)

HSP 1 Score: 342 bits (877), Expect = 1.820e-109
Identity = 174/274 (63.50%), Postives = 213/274 (77.74%), Query Frame = 1
Query:    1 EFGIPMDFPDEVLEAAREQASLFDETKLGNRRDLTNETIVTIDPADARDFDDAISLTQNERGHWVLGVHIADAAHFVKEGSVLDREARRRGTSVYLPGQVIPMLPEIISNGLASLQQDQVRFTKSAFIEFTSDGVPVHTEFVNSAIRVKKRFAYEQVLPIIQERDEEGDRIPRDVRELLKNMHHLAMMLRKRRFAAGALELHLSEVRLTFDDKHRVSGAVEREHDESHQIIEEFMLAANIAVAEGLNDRGLRFLRRVHPSPDYQRQVEFAEFVS 822
            E+G+P +FP+E+L  AR +A  F+   LG+R DLT +TIVTIDPADARDFDDAISL + ++GHW+LGVHIAD AHFV+ GSVLDREA++RG SVYLP +V+PMLPE+ISNGLASLQ+ +VRFTKSAFIEFT DG PVHT F  +AIRV KRFAYEQVLP+++E +    ++P  VR+LL +M+ LAM LR RRF  GALEL + E+ L FD   RVSGA E  HDESHQ+IEEFMLAAN+AVA  + D G  FLRRVH SP   +   F+EF +
Sbjct:  220 EYGLPDEFPEEILNEARLEAENFNPDDLGDREDLTKQTIVTIDPADARDFDDAISLERTDKGHWLLGVHIADVAHFVQPGSVLDREAQQRGNSVYLPTRVLPMLPEVISNGLASLQEKKVRFTKSAFIEFTEDGTPVHTRFARTAIRVTKRFAYEQVLPVVKEPERHKGKVPAKVRKLLADMYELAMTLRGRRFRRGALELDMPEIELEFDKDGRVSGAHEASHDESHQMIEEFMLAANVAVATKMADLGWPFLRRVHGSPTPMKLKAFSEFAA 493          
BLAST of mRNA_M-pyrifera_M_contig88185.20483.1 vs. uniprot
Match: A0A517PEL3_9PLAN (Ribonuclease R n=1 Tax=Alienimonas californiensis TaxID=2527989 RepID=A0A517PEL3_9PLAN)

HSP 1 Score: 343 bits (880), Expect = 3.010e-109
Identity = 176/273 (64.47%), Postives = 211/273 (77.29%), Query Frame = 1
Query:    1 EFGIPMDFPDEVLEAAREQASLFDETKLGNRRDLTNETIVTIDPADARDFDDAISLTQNERGHWVLGVHIADAAHFVKEGSVLDREARRRGTSVYLPGQVIPMLPEIISNGLASLQQDQVRFTKSAFIEFTSDGVPVHTEFVNSAIRVKKRFAYEQVLPIIQERDEEGDRIPRDVRELLKNMHHLAMMLRKRRFAAGALELHLSEVRLTFDDKHRVSGAVEREHDESHQIIEEFMLAANIAVAEGLNDRGLRFLRRVHPSPDYQRQVEFAEFV 819
            EFG+P +FPDEVL AA E+A  FDE  LG+R DLT ETIVTIDPA A+DFDDAISL + E GHWVLGVHIAD AHFV+  S LD+EA+ R TSVYLPG+VIPMLPE+ISNGLASLQQ +VR+ K+ FIEF   G+PV T F N+AI+V KRFAYEQV+PI+ + D    ++ +DVR LL +M+ LAM LRKRRFAAGALE+H+ EV L  + K  V GA E  HDESH+IIEEFMLAAN+AVA+ L  RGL F+RR H  PD  +  +F+EFV
Sbjct:  258 EFGLPEEFPDEVLAAASEEARRFDEEHLGDRLDLTGETIVTIDPATAKDFDDAISLKRIENGHWVLGVHIADVAHFVQPNSALDKEAKDRATSVYLPGKVIPMLPEVISNGLASLQQGKVRYVKTCFIEFDPTGIPVKTRFANAAIKVTKRFAYEQVMPIVHDPDAYARKVRKDVRHLLLDMYSLAMTLRKRRFAAGALEMHMPEVTLDLNKKGEVVGASEAHHDESHEIIEEFMLAANVAVAQALEARGLTFIRREHGDPDEAKLKQFSEFV 530          
BLAST of mRNA_M-pyrifera_M_contig88185.20483.1 vs. uniprot
Match: A0A3L7UE29_9BACT (Ribonuclease R n=2 Tax=Planctomycetes TaxID=203682 RepID=A0A3L7UE29_9BACT)

HSP 1 Score: 343 bits (879), Expect = 4.730e-109
Identity = 188/298 (63.09%), Postives = 218/298 (73.15%), Query Frame = 1
Query:    1 EFGIPMDFPDEVLEAAREQASLFDETKLGNRRDLTNETIVTIDPADARDFDDAISLTQNERGHWVLGVHIADAAHFVKEGSVLDREARRRGTSVYLPGQVIPMLPEIISNGLASLQQDQVRFTKSAFIEFTSDGVPVHTEFVNSAIRVKKRFAYEQVLPIIQERDEEGDRIPRD------------------------VRELLKNMHHLAMMLRKRRFAAGALELHLSEVRLTFDDKHRVSGAVEREHDESHQIIEEFMLAANIAVAEGLNDRGLRFLRRVHPSPDYQRQVEFAEFVS 822
            EF +P +FP EVL  A  QA LFDE  L  R DLTN+TIVTIDP DARDFDDAISL +NE GHWVLGVHIAD AHFVK GSVLDREARRRGTSVYLP +V+PMLPE+ISNGLASLQQ +VR+T SAFIEFT DGVPVHTEF  SAI+V +RFAYE+V+P+I+E +   +  PR                         VR LL ++H LAM LR+RRFA G+L+L+L EV+L FD + RV GA E EHDESHQ+IEEFMLAANIAVA  LND  + FLRRVH  PD  +   FA+FV+
Sbjct:  242 EFNLPDEFPPEVLHEAARQAELFDEADLRGRLDLTNDTIVTIDPFDARDFDDAISLKRNEVGHWVLGVHIADVAHFVKRGSVLDREARRRGTSVYLPTRVLPMLPEVISNGLASLQQGRVRYTNSAFIEFTPDGVPVHTEFAKSAIKVTQRFAYEEVMPLIREGEAPAE--PRKIKDVVRADGSAGTSPSHSHPVSSVVRRLLHDLHSLAMTLRRRRFAKGSLDLNLPEVKLDFDKEGRVIGAHEVEHDESHQLIEEFMLAANIAVATKLNDLEVGFLRRVHAEPDSVKLQAFAKFVA 537          
BLAST of mRNA_M-pyrifera_M_contig88185.20483.1 vs. uniprot
Match: A0A3E0Q0Q7_9BACT (Ribonuclease R n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3E0Q0Q7_9BACT)

HSP 1 Score: 339 bits (869), Expect = 4.970e-108
Identity = 173/272 (63.60%), Postives = 212/272 (77.94%), Query Frame = 1
Query:    1 EFGIPMDFPDEVLEAAREQASLFDETKLGNRRDLTNETIVTIDPADARDFDDAISLTQNERGHWVLGVHIADAAHFVKEGSVLDREARRRGTSVYLPGQVIPMLPEIISNGLASLQQDQVRFTKSAFIEFTSDGVPVHTEFVNSAIRVKKRFAYEQVLPIIQERDEEGDRIPRDVRELLKNMHHLAMMLRKRRFAAGALELHLSEVRLTFDDKHRVSGAVEREHDESHQIIEEFMLAANIAVAEGLNDRGLRFLRRVHPSPDYQRQVEFAEF 816
            EFG+  +FP++VL+AAR +A  FDE  L +R DLT E +VTIDP DARDFDDAISLT++E GHW LGVHIAD AHFV+ G+ LDREA+ RGTSVYLP +VIPMLPE++SN LASLQ+ +VRF KS FIE+T++G+PVHT F  SAI+V KRFAYEQVLPII+    +   +P  +R+LL  MH LAM+LR RRF+AGA+ L L E++L FD++ RVSGA E  HDESHQ+IEEFMLAANIAVA  L DRG+ FLRR H  P  ++   FAEF
Sbjct:  250 EFGLRDEFPEDVLDAARIEAENFDENDLTDREDLTGELMVTIDPVDARDFDDAISLTRSEDGHWHLGVHIADVAHFVQPGTPLDREAQLRGTSVYLPTKVIPMLPEVLSNSLASLQEKRVRFAKSVFIEYTAEGIPVHTRFARSAIKVNKRFAYEQVLPIIEGDGPQRGDVPAKIRKLLTEMHELAMLLRGRRFSAGAMNLDLPEIKLEFDNEGRVSGAHETVHDESHQLIEEFMLAANIAVATELTDRGIEFLRRTHGEPSEKKMQAFAEF 521          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig88185.20483.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A518FNH8_9PLAN2.370e-17191.97Ribonuclease R n=9 Tax=Gimesia TaxID=1649453 RepID... [more]
A0A518I8A9_9PLAN3.370e-15685.40Ribonuclease R n=2 Tax=Gimesia TaxID=1649453 RepID... [more]
A0A517W158_9PLAN6.700e-15081.39Ribonuclease R n=2 Tax=Gimesia aquarii TaxID=25279... [more]
A0A2E2CBC2_9PLAN3.580e-14980.29Ribonuclease R n=12 Tax=Planctomycetaceae TaxID=12... [more]
A0A3B1DQQ3_9ZZZZ4.540e-11364.96Exoribonuclease II (Fragment) n=1 Tax=hydrothermal... [more]
A0A7C4LL91_9PLAN2.850e-11065.93Ribonuclease R n=1 Tax=Schlesneria paludicola TaxI... [more]
A0A517ZFY1_9PLAN1.820e-10963.50Ribonuclease R n=1 Tax=Maioricimonas rarisocia Tax... [more]
A0A517PEL3_9PLAN3.010e-10964.47Ribonuclease R n=1 Tax=Alienimonas californiensis ... [more]
A0A3L7UE29_9BACT4.730e-10963.09Ribonuclease R n=2 Tax=Planctomycetes TaxID=203682... [more]
A0A3E0Q0Q7_9BACT4.970e-10863.60Ribonuclease R n=1 Tax=Planctomycetes bacterium Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig88185contigM-pyrifera_M_contig88185:1..822 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score444.1
Seed ortholog evalue4.6e-122
Seed eggNOG ortholog344747.PM8797T_17604
Preferred namernr
KEGG koko:K12573,ko:K12585
KEGG Pathwayko03018,map03018
KEGG ModuleM00391
Hectar predicted targeting categoryother localisation
EggNOG free text desc.3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs
EggNOG OGs2IX1J@203682,COG0557@1,COG0557@2
COG Functional cat.J
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03016,ko03019
Exons1
Model size822
Cds size807
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816791.4304464-CDS-M-pyrifera_M_contig88185:0..8071622816791.4304464-CDS-M-pyrifera_M_contig88185:0..807Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88185 1..807 -
1692278180.5844843-CDS-M-pyrifera_M_contig88185:0..8071692278180.5844843-CDS-M-pyrifera_M_contig88185:0..807Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88185 1..807 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816791.4425285-UTR-M-pyrifera_M_contig88185:807..8221622816791.4425285-UTR-M-pyrifera_M_contig88185:807..822Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig88185 808..822 -
1692278180.597874-UTR-M-pyrifera_M_contig88185:807..8221692278180.597874-UTR-M-pyrifera_M_contig88185:807..822Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig88185 808..822 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig88185.20483.1prot_M-pyrifera_M_contig88185.20483.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig88185 1..807 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig88185.20483.1

>prot_M-pyrifera_M_contig88185.20483.1 ID=prot_M-pyrifera_M_contig88185.20483.1|Name=mRNA_M-pyrifera_M_contig88185.20483.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=269bp
MDFPDEVLEAAREQASLFDETKLGNRRDLTNETIVTIDPADARDFDDAIS
LTQNERGHWVLGVHIADAAHFVKEGSVLDREARRRGTSVYLPGQVIPMLP
EIISNGLASLQQDQVRFTKSAFIEFTSDGVPVHTEFVNSAIRVKKRFAYE
QVLPIIQERDEEGDRIPRDVRELLKNMHHLAMMLRKRRFAAGALELHLSE
VRLTFDDKHRVSGAVEREHDESHQIIEEFMLAANIAVAEGLNDRGLRFLR
RVHPSPDYQRQVEFAEFVS
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mRNA from alignment at M-pyrifera_M_contig88185:1..822-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig88185.20483.1 ID=mRNA_M-pyrifera_M_contig88185.20483.1|Name=mRNA_M-pyrifera_M_contig88185.20483.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=822bp|location=Sequence derived from alignment at M-pyrifera_M_contig88185:1..822- (Macrocystis pyrifera P11B4 male)
GAGTTCGGTATCCCGATGGACTTTCCGGATGAGGTCCTGGAAGCAGCTCG AGAGCAGGCGAGCCTGTTTGATGAGACAAAACTGGGGAATCGCCGCGACC TGACCAACGAGACGATCGTGACGATTGACCCTGCGGATGCCCGGGACTTC GATGATGCAATTTCGCTGACTCAGAACGAGCGCGGGCACTGGGTGCTGGG CGTGCATATTGCCGATGCGGCGCACTTTGTTAAAGAGGGTTCTGTACTGG ACCGTGAGGCCCGACGGCGGGGGACCAGTGTGTATCTGCCCGGCCAGGTG ATTCCGATGCTGCCTGAGATCATTTCAAATGGTCTGGCCAGTCTGCAGCA GGATCAGGTGCGTTTCACCAAATCTGCGTTTATCGAATTTACGTCGGATG GCGTGCCGGTCCATACCGAGTTCGTCAATTCCGCGATTCGGGTCAAGAAG CGGTTCGCCTACGAGCAGGTGCTGCCCATCATTCAGGAACGTGACGAGGA AGGGGACCGGATACCCCGGGACGTCCGCGAGCTGCTGAAAAACATGCATC ATCTGGCAATGATGCTGCGAAAACGTCGCTTTGCTGCCGGTGCACTGGAG TTGCACCTCTCCGAAGTGCGGCTCACCTTTGACGACAAACATCGTGTGAG TGGTGCCGTTGAACGCGAGCATGACGAAAGCCACCAGATCATCGAAGAAT TCATGCTGGCAGCGAATATTGCGGTCGCGGAAGGACTCAATGACCGGGGA CTGCGGTTTCTGCGTCGCGTGCATCCGTCGCCTGACTACCAGCGGCAAGT GGAATTCGCCGAGTTTGTCAGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig88185:1..822-

>mRNA_M-pyrifera_M_contig88185.20483.1 ID=mRNA_M-pyrifera_M_contig88185.20483.1|Name=mRNA_M-pyrifera_M_contig88185.20483.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1614bp|location=Sequence derived from alignment at M-pyrifera_M_contig88185:1..822- (Macrocystis pyrifera P11B4 male)
ATGGACTTTCCGGATGAGGTCCTGGAAGCAGCTCGAGAGCAGGCGAGCCT
GTTTGATGAGACAAAACTGGGGAATCGCCGCGACCTGACCAACGAGACGA
TCGTGACGATTGACCCTGCGGATGCCCGGGACTTCGATGATGCAATTTCG
CTGACTCAGAACGAGCGCGGGCACTGGGTGCTGGGCGTGCATATTGCCGA
TGCGGCGCACTTTGTTAAAGAGGGTTCTGTACTGGACCGTGAGGCCCGAC
GGCGGGGGACCAGTGTGTATCTGCCCGGCCAGGTGATTCCGATGCTGCCT
GAGATCATTTCAAATGGTCTGGCCAGTCTGCAGCAGGATCAGGTGCGTTT
CACCAAATCTGCGTTTATCGAATTTACGTCGGATGGCGTGCCGGTCCATA
CCGAGTTCGTCAATTCCGCGATTCGGGTCAAGAAGCGGTTCGCCTACGAG
CAGGTGCTGCCCATCATTCAGGAACGTGACGAGGAAGGGGACCGGATACC
CCGGGACGTCCGCGAGCTGCTGAAAAACATGCATCATCTGGCAATGATGC
TGCGAAAACGTCGCTTTGCTGCCGGTGCACTGGAGTTGCACCTCTCCGAA
GTGCGGCTCACCTTTGACGACAAACATCGTGTGAGTGGTGCCGTTGAACG
CGAGCATGACGAAAGCCACCAGATCATCGAAGAATTCATGCTGGCAGCGA
ATATTGCGGTCGCGGAAGGACTCAATGACCGGGGACTGCGGTTTCTGCGT
CGCGTGCATCCGTCGCCTGACTACCAGCGGCAAGTGGAATTCGCCGAGTT
TGTCAGCATGGACTTTCCGGATGAGGTCCTGGAAGCAGCTCGAGAGCAGG
CGAGCCTGTTTGATGAGACAAAACTGGGGAATCGCCGCGACCTGACCAAC
GAGACGATCGTGACGATTGACCCTGCGGATGCCCGGGACTTCGATGATGC
AATTTCGCTGACTCAGAACGAGCGCGGGCACTGGGTGCTGGGCGTGCATA
TTGCCGATGCGGCGCACTTTGTTAAAGAGGGTTCTGTACTGGACCGTGAG
GCCCGACGGCGGGGGACCAGTGTGTATCTGCCCGGCCAGGTGATTCCGAT
GCTGCCTGAGATCATTTCAAATGGTCTGGCCAGTCTGCAGCAGGATCAGG
TGCGTTTCACCAAATCTGCGTTTATCGAATTTACGTCGGATGGCGTGCCG
GTCCATACCGAGTTCGTCAATTCCGCGATTCGGGTCAAGAAGCGGTTCGC
CTACGAGCAGGTGCTGCCCATCATTCAGGAACGTGACGAGGAAGGGGACC
GGATACCCCGGGACGTCCGCGAGCTGCTGAAAAACATGCATCATCTGGCA
ATGATGCTGCGAAAACGTCGCTTTGCTGCCGGTGCACTGGAGTTGCACCT
CTCCGAAGTGCGGCTCACCTTTGACGACAAACATCGTGTGAGTGGTGCCG
TTGAACGCGAGCATGACGAAAGCCACCAGATCATCGAAGAATTCATGCTG
GCAGCGAATATTGCGGTCGCGGAAGGACTCAATGACCGGGGACTGCGGTT
TCTGCGTCGCGTGCATCCGTCGCCTGACTACCAGCGGCAAGTGGAATTCG
CCGAGTTTGTCAGC
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