mRNA_M-pyrifera_M_contig88183.20482.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig88183.20482.1
Unique NamemRNA_M-pyrifera_M_contig88183.20482.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig88183.20482.1 vs. uniprot
Match: A0A0L0DFZ7_THETB (Uncharacterized protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DFZ7_THETB)

HSP 1 Score: 89.7 bits (221), Expect = 4.950e-18
Identity = 61/185 (32.97%), Postives = 92/185 (49.73%), Query Frame = 1 
Query:   10 ASEGAVILRGFRLDMHCNPDLQPVGDVCNSEGIWASFLEVNITDCG---ETSAGSLQCNAVFNMVRGCNPGCNSPIAPKPFNYVMSYDLFVYYTYVF----GAEVTAD-QVKASQNTDLGVVTKNVTTYGQSGFDQGTMAITGFSYDL--QQFGDIENLGRYLERLAYNVQDVRYKADEGSAAYS 534
            A+E AV+L GF L+M CNP LQP G+VCNS GIWA+ + V I +     + ++G L  +  F + R   P        KPFN+ M++D     T V     G  VT   +V+   +        +    G+ G   G + ITG+ + L  Q   +   LGRY E +A+ V+   Y    G+A+++
Sbjct:  110 AAEPAVLLGGFALNMSCNPALQPPGEVCNSNGIWATHIAVEIDNGSVVLDRASGVLHFDLAFELGRAWTPDKGGG---KPFNWRMTFDAVFDATIVLAAPAGGRVTPGARVELVSSLWAPSSAHSAAITGKPGVPAGEVGITGWGFSLVPQHANETSRLGRYFESIAFAVEKQVYAPTSGTASFA 291
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BLAST of mRNA_M-pyrifera_M_contig88183.20482.1 vs. uniprot
Match: A0A0G4GDE3_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4GDE3_9ALVE)

HSP 1 Score: 68.6 bits (166), Expect = 2.330e-10
Identity = 46/180 (25.56%), Postives = 83/180 (46.11%), Query Frame = 1 
Query:    1 TRAASEGAVILRGFRLDMHCNPDLQPVGDVCNSEGIWASFLEVNITDCGETSAGSLQCNAVFNMVRGCNPGCNSPIAPKPFNYVMSYDLFVYYTYVFGAEVTADQVKASQNTDLGVVTKNVTTY-----GQSGFDQGTMAITGFSYDLQQFGDIENLGRYLERLAYNVQDVRYKADEGSA 525
            T++ +  A +LRG R+D+HCNP+ Q     C+S G W   +EV +    E           F   R   P   S    KP ++ + +++ VYYT   G +          +T    + +    +     G+ G  + T+ ++ F ++L++    + LGRY+E L ++V  V+ +  + SA
Sbjct:  144 TQSCTNFATVLRGLRIDIHCNPEAQGEKK-CHSNGAWPYKMEVGVEGDSEIE---------FTFGRAWTP---SKGGLKPMDWRLDFNVTVYYTSFCGEDAEFYSTLGPLHTASSEIHEPSAKWSEGIVGKEGCAESTLGVSRFGFELKETQKHKKLGRYIESLEFSVSSVKTEGAKTSA 310
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig88183.20482.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A0L0DFZ7_THETB4.950e-1832.97Uncharacterized protein n=1 Tax=Thecamonas trahens... [more]
A0A0G4GDE3_9ALVE2.330e-1025.56Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig88183contigM-pyrifera_M_contig88183:9..596 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.4
Seed ortholog evalue7.2e-15
Seed eggNOG ortholog529818.AMSG_06422T0
Hectar predicted targeting categoryother localisation
EggNOG OGs2EXR1@1,2SZCB@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size534
Cds size534
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816791.3821287-CDS-M-pyrifera_M_contig88183:8..2911622816791.3821287-CDS-M-pyrifera_M_contig88183:8..291Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88183 9..291 -
1692278180.5617056-CDS-M-pyrifera_M_contig88183:8..2911692278180.5617056-CDS-M-pyrifera_M_contig88183:8..291Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88183 9..291 -
1622816791.3952997-CDS-M-pyrifera_M_contig88183:345..5961622816791.3952997-CDS-M-pyrifera_M_contig88183:345..596Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88183 346..596 -
1692278180.5725522-CDS-M-pyrifera_M_contig88183:345..5961692278180.5725522-CDS-M-pyrifera_M_contig88183:345..596Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88183 346..596 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig88183.20482.1prot_M-pyrifera_M_contig88183.20482.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig88183 9..596 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig88183.20482.1

>prot_M-pyrifera_M_contig88183.20482.1 ID=prot_M-pyrifera_M_contig88183.20482.1|Name=mRNA_M-pyrifera_M_contig88183.20482.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=178bp
TRAASEGAVILRGFRLDMHCNPDLQPVGDVCNSEGIWASFLEVNITDCGE
TSAGSLQCNAVFNMVRGCNPGCNSPIAPKPFNYVMSYDLFVYYTYVFGAE
VTADQVKASQNTDLGVVTKNVTTYGQSGFDQGTMAITGFSYDLQQFGDIE
NLGRYLERLAYNVQDVRYKADEGSAAYS
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mRNA from alignment at M-pyrifera_M_contig88183:9..596-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig88183.20482.1 ID=mRNA_M-pyrifera_M_contig88183.20482.1|Name=mRNA_M-pyrifera_M_contig88183.20482.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=588bp|location=Sequence derived from alignment at M-pyrifera_M_contig88183:9..596- (Macrocystis pyrifera P11B4 male)
ACCCGTGCAGCAAGCGAAGGTGCGGTCATACTTCGAGGGTTCAGGCTCGA
CATGCACTGCAACCCAGATCTCCAGCCTGTAGGAGATGTGTGCAACTCAG
AAGGTATCTGGGCGTCTTTCTTGGAGGTGAACATCACAGACTGTGGCGAG
ACCTCAGCAGGATCTTTGCAGTGCAACGCCGTGTTCAACATGGTTCGAGG
CTGCAACCCAGGCTGCAACAGCCCCATTGCACCGAAACCATTCAACTATG
TGTAGGCACACCTCTGTGTTCATTTGAGGTATTGAGCGATTCTGACCAGC
GCCAGCATGTCGTACGACCTGTTTGTCTACTACACATACGTGTTTGGAGC
AGAAGTAACTGCAGACCAGGTCAAGGCTTCGCAAAACACCGACCTTGGTG
TTGTGACTAAGAATGTGACCACTTACGGGCAGAGTGGGTTCGACCAAGGT
ACTATGGCGATCACAGGCTTCTCCTACGACCTCCAGCAGTTCGGTGACAT
TGAGAACCTTGGAAGGTACCTGGAGAGGCTGGCATACAACGTCCAGGACG
TGAGGTACAAAGCGGACGAGGGCTCTGCAGCTTACAGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig88183:9..596-

>mRNA_M-pyrifera_M_contig88183.20482.1 ID=mRNA_M-pyrifera_M_contig88183.20482.1|Name=mRNA_M-pyrifera_M_contig88183.20482.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1068bp|location=Sequence derived from alignment at M-pyrifera_M_contig88183:9..596- (Macrocystis pyrifera P11B4 male)
ACCCGTGCAGCAAGCGAAGGTGCGGTCATACTTCGAGGGTTCAGGCTCGA
CATGCACTGCAACCCAGATCTCCAGCCTGTAGGAGATGTGTGCAACTCAG
AAGGTATCTGGGCGTCTTTCTTGGAGGTGAACATCACAGACTGTGGCGAG
ACCTCAGCAGGATCTTTGCAGTGCAACGCCGTGTTCAACATGGTTCGAGG
CTGCAACCCAGGCTGCAACAGCCCCATTGCACCGAAACCATTCAACTATG
TACCCGTGCAGCAAGCGAAGGTGCGGTCATACTTCGAGGGTTCAGGCTCG
ACATGCACTGCAACCCAGATCTCCAGCCTGTAGGAGATGTGTGCAACTCA
GAAGGTATCTGGGCGTCTTTCTTGGAGGTGAACATCACAGACTGTGGCGA
GACCTCAGCAGGATCTTTGCAGTGCAACGCCGTGTTCAACATGGTTCGAG
GCTGCAACCCAGGCTGCAACAGCCCCATTGCACCGAAACCATTCAACTAT
GTCATGTCGTACGACCTGTTTGTCTACTACACATACGTGTTTGGAGCAGA
AGTAACTGCAGACCAGGTCAAGGCTTCGCAAAACACCGACCTTGGTGTTG
TGACTAAGAATGTGACCACTTACGGGCAGAGTGGGTTCGACCAAGGTACT
ATGGCGATCACAGGCTTCTCCTACGACCTCCAGCAGTTCGGTGACATTGA
GAACCTTGGAAGGTACCTGGAGAGGCTGGCATACAACGTCCAGGACGTGA
GGTACAAAGCGGACGAGGGCTCTGCAGCTTACAGCCATGTCGTACGACCT
GTTTGTCTACTACACATACGTGTTTGGAGCAGAAGTAACTGCAGACCAGG
TCAAGGCTTCGCAAAACACCGACCTTGGTGTTGTGACTAAGAATGTGACC
ACTTACGGGCAGAGTGGGTTCGACCAAGGTACTATGGCGATCACAGGCTT
CTCCTACGACCTCCAGCAGTTCGGTGACATTGAGAACCTTGGAAGGTACC
TGGAGAGGCTGGCATACAACGTCCAGGACGTGAGGTACAAAGCGGACGAG
GGCTCTGCAGCTTACAGC
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