|
Homology
BLAST of mRNA_M-pyrifera_M_contig8818.20481.1 vs. uniprot
Match: D8LL70_ECTSI (DUF4524 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL70_ECTSI) HSP 1 Score: 184 bits (466), Expect = 9.250e-47 Identity = 196/507 (38.66%), Postives = 234/507 (46.15%), Query Frame = 1
Query: 1 VVVHADGTEVLLEGDFVRLSNGAVADAAXXXXXXXXXXXXXXXXXXXXXETCTSVSLGDIVARALALRRQFAASSVAVVAAETETAADAGRLPASVRYKIRTSKVQIAPAGNYSRLSTPAAXXXXXXXXXXPRAEAXXXXXXXXXXXARDGIGVAGPGSAPTTAKRSAGRKPHEFSAEVVERAEHGGASFVAFADGRARGAFADRTIVTLGAPGVDRGYSGCQRGDPGYXXXXXVHRGYPGVGFPLAGVFSEPEEGD--------REIECVRPDGTVVRLSERSLGHRFRFGTSCGGGDLAKATAATRPHGGNADHPIDITPYVVAVRRFADWALADPDERRARARRGADGRLAAAAEAERNRRFVALQ-----RLVKPPPL------------PTETTANGDAAGENRYSLGEFKKSSTERLLSCPVGGGDRGTPRAGEGWSSSEGN-KENVR---------CAEEHAG---WGSNEA-RERNALVNRLLEANREVLIGREALRRF 1404
VVVHADG+EV LEGDFVRL A TS+SLG+I +RA+ALR+QF S AA A G V KIR S V + P S LS+P++ R A +G G GS+ + + +AG S VVE E GGASFVAFADGRARG FADRTIV LGAP R G + G G XXXXX RE+EC+R DGTV+RL+ RSL R FG GGG++ P GG+ + PYVVAV RFADWA P +RRA A R A AAEAERNRRFV LQ R V PPPL P + T +G AAG R ++S E S G R GE + +G KEN R EE +G WG + R+RN+LV LLEANR+VL+G R+F
Sbjct: 402 VVVHADGSEVWLEGDFVRLVRPPAAAGVPAMTAAAAEAGGGW----------TSMSLGNIASRAIALRQQFLQCSGNPAAAAAAAAGRRGPGEPQVTVKIRPSLVVVQPP---SALSSPSSSSSPVEAVV--RNAAAPRPTNKPYAPPEEG-GARWLGSSSSRGRMAAG------SPSVVESVERGGASFVAFADGRARGTFADRTIVCLGAPFFYRPLRGSRCGVGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREVECIRADGTVLRLTRRSLDRRGSFGGRSGGGNI--------PAGGDCGVGA-LRPYVVAVLRFADWAATHPADRRAAAGREAAXXXXXAAEAERNRRFVDLQLLAAKRSVPPPPLLCYHRGGLDPREPYDGTPSG-AAGSRRGG----RRSGDE--ASASPGLRRRAVGACGE--ENDDGQYKENNRPRRPSNRVDVLEEGSGVSRWGGGDGGRQRNSLVAGLLEANRKVLMGEHMSRKF 868
BLAST of mRNA_M-pyrifera_M_contig8818.20481.1 vs. uniprot
Match: A0A6H5KVD6_9PHAE (DUF4524 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVD6_9PHAE) HSP 1 Score: 171 bits (432), Expect = 3.850e-42 Identity = 175/452 (38.72%), Postives = 213/452 (47.12%), Query Frame = 1
Query: 157 TSVSLGDIVARALALRRQFAASSVAVVAAETETAADAGRLPASVRYKIRTSKVQIAPAGNYSRLSTPAAXXXXXXXXXXPRAEAXXXXXXXXXXXARDGIGVAGPGSAPTTAKRSAGRKPHEFSAEVVERAEHGGASFVAFADGRARGAFADRTIVTLGAPGVDRGYSGCQRGDPGYXXXXXVHRG--YPGVGFPLAGVFS------------EPEEGDREIECVRPDGTVVRLSERSLGHRFRFGTSCGGGDLAKATAATRPHGGNADHPIDITPYVVAVRRFADWALADPDERRARARRGADGRLAAAAEAERNRRFVALQ-----RLVKPPPL------------PTETTANGDAAGENRYSLGEFKKSSTERLLSCPVG-GGDRGTPRAGEGWSSSEGNKENVRCAEEHAG---WGSNEA-RERNALVNRLLEANREVLIGREALRRF 1404
TS+SLG I +RA+ALR+QF S +AA A G KIR +V + P + LS+P++ A A + P S TA S VVE E GGASFVAFADGRARGAFADRTIV+LGAP R G + G G XXXXX RG Y G G P + E EE DREIEC+R DGTV+RL+ SL R FG GGG+ P GN + PYVVAV RFADWA P +RRA A R A G AAEAERNRRFV LQ R V PPPL P + + +G A + +++ L VG GG+ + S V E +G WG + R+RN+LV LLEANR+VL+G + R+F
Sbjct: 601 TSMSLGAITSRAIALRQQFLRCSG--IAATAAAAGIRGAGDHRDIVKIRPPRVVVQPP---AALSSPSSSSSPVEAVAGNAAAPRPTTKPYAPPEAGGARWLGSPSSRGGTAAGSP---------SVVELVERGGASFVAFADGRARGAFADRTIVSLGAPVFYRPLRGSRCG--GXXXXXXXXRGISYYGSGGPKGVATAVVRPGCSDVDEEEKEEEDREIECIRADGTVLRLTRHSLDRRGSFGGRSGGGNS--------PASGNCGVGA-LRPYVVAVLRFADWAATHPADRRAAAGREAAGXXXXAAEAERNRRFVDLQLLAAKRSVAPPPLLCYHRGGPDQRQPYDGSPSGAAGSRRGGRRSGDEANASPGLWRRAVGVGGEENNDDQDKENSRPRRPSNRVDVLEGSSGVSKWGGGDGGRQRNSLVAGLLEANRKVLMGEDLSRKF 1027
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Ec32 ortholog description | Domain of unknown function DUF4524 |
Ec32 ortholog | Ec-24_002720.1 |
Exons | 6 |
Model size | 1434 |
Cds size | 1434 |
Stop | 1 |
Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622816791.2879653-CDS-M-pyrifera_M_contig8818:9515..10090 | 1622816791.2879653-CDS-M-pyrifera_M_contig8818:9515..10090 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig8818 9516..10090 - |
1692278180.5031102-CDS-M-pyrifera_M_contig8818:9515..10090 | 1692278180.5031102-CDS-M-pyrifera_M_contig8818:9515..10090 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig8818 9516..10090 - |
1622816791.2989955-CDS-M-pyrifera_M_contig8818:10150..10370 | 1622816791.2989955-CDS-M-pyrifera_M_contig8818:10150..10370 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig8818 10151..10370 - |
1692278180.5139043-CDS-M-pyrifera_M_contig8818:10150..10370 | 1692278180.5139043-CDS-M-pyrifera_M_contig8818:10150..10370 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig8818 10151..10370 - |
1622816791.3108733-CDS-M-pyrifera_M_contig8818:10505..10814 | 1622816791.3108733-CDS-M-pyrifera_M_contig8818:10505..10814 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig8818 10506..10814 - |
1692278180.5235343-CDS-M-pyrifera_M_contig8818:10505..10814 | 1692278180.5235343-CDS-M-pyrifera_M_contig8818:10505..10814 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig8818 10506..10814 - |
1622816791.3226383-CDS-M-pyrifera_M_contig8818:11000..11201 | 1622816791.3226383-CDS-M-pyrifera_M_contig8818:11000..11201 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig8818 11001..11201 - |
1692278180.5330665-CDS-M-pyrifera_M_contig8818:11000..11201 | 1692278180.5330665-CDS-M-pyrifera_M_contig8818:11000..11201 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig8818 11001..11201 - |
1622816791.335561-CDS-M-pyrifera_M_contig8818:11228..11300 | 1622816791.335561-CDS-M-pyrifera_M_contig8818:11228..11300 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig8818 11229..11300 - |
1692278180.5424688-CDS-M-pyrifera_M_contig8818:11228..11300 | 1692278180.5424688-CDS-M-pyrifera_M_contig8818:11228..11300 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig8818 11229..11300 - |
1622816791.3492355-CDS-M-pyrifera_M_contig8818:11486..11543 | 1622816791.3492355-CDS-M-pyrifera_M_contig8818:11486..11543 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig8818 11487..11543 - |
1692278180.5518095-CDS-M-pyrifera_M_contig8818:11486..11543 | 1692278180.5518095-CDS-M-pyrifera_M_contig8818:11486..11543 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig8818 11487..11543 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig8818.20481.1 >prot_M-pyrifera_M_contig8818.20481.1 ID=prot_M-pyrifera_M_contig8818.20481.1|Name=mRNA_M-pyrifera_M_contig8818.20481.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=478bp
VVVHADGTEVLLEGDFVRLSNGAVADAAAASAAAAVAAAAATGGRGGGGE TCTSVSLGDIVARALALRRQFAASSVAVVAAETETAADAGRLPASVRYKI RTSKVQIAPAGNYSRLSTPAAAAAAAATTTTPRAEAAATAAATTATTARD GIGVAGPGSAPTTAKRSAGRKPHEFSAEVVERAEHGGASFVAFADGRARG AFADRTIVTLGAPGVDRGYSGCQRGDPGYMGCMGVHRGYPGVGFPLAGVF SEPEEGDREIECVRPDGTVVRLSERSLGHRFRFGTSCGGGDLAKATAATR PHGGNADHPIDITPYVVAVRRFADWALADPDERRARARRGADGRLAAAAE AERNRRFVALQRLVKPPPLPTETTANGDAAGENRYSLGEFKKSSTERLLS CPVGGGDRGTPRAGEGWSSSEGNKENVRCAEEHAGWGSNEARERNALVNR LLEANREVLIGREALRRFGLKYDTWAV* back to topmRNA from alignment at M-pyrifera_M_contig8818:9516..11543- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_M-pyrifera_M_contig8818.20481.1 ID=mRNA_M-pyrifera_M_contig8818.20481.1|Name=mRNA_M-pyrifera_M_contig8818.20481.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2028bp|location=Sequence derived from alignment at M-pyrifera_M_contig8818:9516..11543- (Macrocystis pyrifera P11B4 male) GTTGTCGTCCACGCGGACGGGACGGAAGTGCTCCTTGAAGGCGACTTCGT
GCGCCTTGTTCGCCCTCAAGCACTCACTACCGCCACCTCAAAGGGGCCAC
AGGAACGCCTGCTGCACATCTCAGCGGCAACAACTTTCCGCTTCTTCGTG
ACGCGAAGGGTGCAGCCGCTGCCACCAGGGCACACTTCGTTTCCGCTTGT
CGGCGGTAGCAACGCTATCGGCGCTAACGCGAGCGGTAGCAAGTCAAACG
GCGCCGTAGCTGACGCCGCTGCAGCTTCTGCCGCCGCCGCCGTTGCCGCT
GCTGCTGCTACTGGCGTGACTCGGGGCAAGGAAGGGAGGGAGGGGCGGGG
CGGGGGGGGAGAGACGTGCACAAGCGTTTCTCTCGGCGATATCGTCGCTC
GGGCGCTAGCCTTGCGGCGGCAGTTCGCGGCGAGCAGTGTGGCGGTGGTA
GCGGCTGAGACTGAGACCGCTGCTGATGCTGGGCGGCTGCCTGCGAGTGT
TAGGTACAAAATACGCACCAGTAAGGTTCAGATCGCGCCTGCTGTGTTCG
GGTCGAGGCTGGGACCAGCAGCTGCGGTGGCGGACGGGGTGGCCAACGCC
GCTCGACTCTCCTCGAACTCCATGGCAACGGCAGCAACACCAACAACAGT
GACGATGACACCGAGAACGGTAACAACAAACACAACAGTGTCAACAGCGG
CAACAGCGGCAAAAGGTCGGCGACTGCAGGGAAATTATTCCCGGCTCAGT
ACACCGGCAGCAGCAGCAGCAGCAGCAGCAACAACAACAACGCCGAGGGC
CGAAGCAGCGGCAACAGCAGCAGCAACAACAGCAACAACGGCCAGGGATG
GAATAGGAGTAGCAGGACCAGGATCAGCACCAACAACAGCCAAACGAAGC
GCGGGAAGAAAGCCCCACGAGTTTTCCGCAGAGGTGGTAGAACGGGCGGA
GCACGGCGGGGCGTCCTTCGTGGCGTTCGCGGACGGCCGAGCCCGCGGCG
CATTCGCCGACCGCACCATCGTCACCCTCGGCGCGCCTGTTACCCTCAAG
CCTGCGCCCTGTCTACGTCACCGCCCATCGTTGCCTCACCGCTGGGAACG
GCGGCCTGCTGGCGGGAGAAGGAGGAAAGAGGAGTTGGCAAGCAGCACGG
CGGCATCGACCCCGGACTACCAGGGTGTTGATCGGGGCTACTCCGGCTGC
CAGCGCGGTGACCCGGGCTACATGGGCTGCATGGGTGTTCACCGAGGCTA
CCCGGGTGTTGGTTTTCCCCTCGCAGGCGTGTTTTCTGAGCCGGAGGAAG
GGGACCGGGAGATCGAGTGCGTACGTCCGGACGGCACCGTGGTTCGGCTC
AGCGAACGCTCTCTCGGTCACCGGTTCCGCTTCGGCACCTCCTGTGGTTT
CCGCACAGGAGGTTTAGACACCGGTGGCGACTCCTGTGGCGGCTTCGGCA
GAGGTGGGGGTGGTGACTTGGCAAAGGCGACGGCGGCAACGAGACCACAT
GGTGGGAACGCCGACCACCCCATCGATATCACGCCTTACGTTGTCGCGGT
CCGCCGGTTCGCGGACTGGGCGCTCGCCGACCCGGACGAGCGGCGGGCGC
GAGCGAGGCGTGGGGCGGACGGGAGGCTGGCAGCCGCGGCCGAGGCGGAG
CGTAACCGTCGCTTTGTTGCGCTCCAGCGCCTCGTGAAACCACCGCCCTT
GCCGACAGAAACAACGGCTAACGGCGATGCCGCTGGTGAGAACAGGTACT
CATTGGGAGAGTTCAAAAAGAGTTCCACGGAAAGGCTTTTGTCGTGTCCG
GTGGGGGGGGGTGACAGGGGGACACCACGAGCCGGGGAAGGGTGGTCGTC
GAGCGAAGGTAATAAGGAAAATGTGCGTTGCGCCGAGGAGCATGCTGGGT
GGGGTTCGAACGAAGCCCGCGAGAGGAACGCTCTAGTGAACCGGCTGCTC
GAGGCCAATCGCGAGGTCTTGATCGGCCGGGAGGCTTTGCGAAGGTTCGG
CCTGAAATACGATACATGGGCGGTTTAA back to topCoding sequence (CDS) from alignment at M-pyrifera_M_contig8818:9516..11543- >mRNA_M-pyrifera_M_contig8818.20481.1 ID=mRNA_M-pyrifera_M_contig8818.20481.1|Name=mRNA_M-pyrifera_M_contig8818.20481.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=2868bp|location=Sequence derived from alignment at M-pyrifera_M_contig8818:9516..11543- (Macrocystis pyrifera P11B4 male) GTTGTCGTCCACGCGGACGGGACGGAAGTGCTCCTTGAAGGCGACTTCGT GCGCCTTGTTGTCGTCCACGCGGACGGGACGGAAGTGCTCCTTGAAGGCG ACTTCGTGCGCCTTTCAAACGGCGCCGTAGCTGACGCCGCTGCAGCTTCT GCCGCCGCCGCCGTTGCCGCTGCTGCTGCTACTGGCTCAAACGGCGCCGT AGCTGACGCCGCTGCAGCTTCTGCCGCCGCCGCCGTTGCCGCTGCTGCTG CTACTGGCGGGCGGGGCGGGGGGGGAGAGACGTGCACAAGCGTTTCTCTC GGCGATATCGTCGCTCGGGCGCTAGCCTTGCGGCGGCAGTTCGCGGCGAG CAGTGTGGCGGTGGTAGCGGCTGAGACTGAGACCGCTGCTGATGCTGGGC GGCTGCCTGCGAGTGTTAGGTACAAAATACGCACCAGTAAGGTTCAGATC GCGCCTGCTGGGCGGGGCGGGGGGGGAGAGACGTGCACAAGCGTTTCTCT CGGCGATATCGTCGCTCGGGCGCTAGCCTTGCGGCGGCAGTTCGCGGCGA GCAGTGTGGCGGTGGTAGCGGCTGAGACTGAGACCGCTGCTGATGCTGGG CGGCTGCCTGCGAGTGTTAGGTACAAAATACGCACCAGTAAGGTTCAGAT CGCGCCTGCTGGAAATTATTCCCGGCTCAGTACACCGGCAGCAGCAGCAG CAGCAGCAGCAACAACAACAACGCCGAGGGCCGAAGCAGCGGCAACAGCA GCAGCAACAACAGCAACAACGGCCAGGGATGGAATAGGAGTAGCAGGACC AGGATCAGCACCAACAACAGCCAAACGAAGCGCGGGAAGAAAGCCCCACG AGTTTTCCGCAGAGGTGGTAGAACGGGCGGAGCACGGCGGGGCGTCCTTC GTGGCGTTCGCGGACGGCCGAGCCCGCGGCGCATTCGCCGACCGCACCAT CGTCACCCTCGGCGCGCCTGGAAATTATTCCCGGCTCAGTACACCGGCAG CAGCAGCAGCAGCAGCAGCAACAACAACAACGCCGAGGGCCGAAGCAGCG GCAACAGCAGCAGCAACAACAGCAACAACGGCCAGGGATGGAATAGGAGT AGCAGGACCAGGATCAGCACCAACAACAGCCAAACGAAGCGCGGGAAGAA AGCCCCACGAGTTTTCCGCAGAGGTGGTAGAACGGGCGGAGCACGGCGGG GCGTCCTTCGTGGCGTTCGCGGACGGCCGAGCCCGCGGCGCATTCGCCGA CCGCACCATCGTCACCCTCGGCGCGCCTGGTGTTGATCGGGGCTACTCCG GCTGCCAGCGCGGTGACCCGGGCTACATGGGCTGCATGGGTGTTCACCGA GGCTACCCGGGTGTTGGTTTTCCCCTCGCAGGCGTGTTTTCTGAGCCGGA GGAAGGGGACCGGGAGATCGAGTGCGTACGTCCGGACGGCACCGTGGTTC GGCTCAGCGAACGCTCTCTCGGTCACCGGTTCCGCTTCGGCACCTCCTGG TGTTGATCGGGGCTACTCCGGCTGCCAGCGCGGTGACCCGGGCTACATGG GCTGCATGGGTGTTCACCGAGGCTACCCGGGTGTTGGTTTTCCCCTCGCA GGCGTGTTTTCTGAGCCGGAGGAAGGGGACCGGGAGATCGAGTGCGTACG TCCGGACGGCACCGTGGTTCGGCTCAGCGAACGCTCTCTCGGTCACCGGT TCCGCTTCGGCACCTCCTGTGGGGGTGGTGACTTGGCAAAGGCGACGGCG GCAACGAGACCACATGGTGGGAACGCCGACCACCCCATCGATATCACGCC TTACGTTGTCGCGGTCCGCCGGTTCGCGGACTGGGCGCTCGCCGACCCGG ACGAGCGGCGGGCGCGAGCGAGGCGTGGGGCGGACGGGAGGCTGGCAGCC GCGGCCGAGGCGGAGCGTAACCGTCGCTTTGTTGCGCTCCAGCGCCTCGT GAAACCACCGCCCTTGCCGACAGAAACAACGGCTAACGGCGATGCCGCTG GTGAGAACAGGTACTCATTGGGAGAGTTCAAAAAGAGTTCCACGGAAAGG CTTTTGTCGTGTCCGGTGGGGGGGGGTGACAGGGGGACACCACGAGCCGG GGAAGGGTGGTCGTCGAGCGAAGGTAATAAGGAAAATGTGCGTTGCGCCG AGGAGCATGCTGGGTGGGGTTCGAACGAAGCCCGCGAGAGGAACGCTCTA GTGAACCGGCTGCTCGAGGCCAATCGCGAGGTCTTGATCGGCCGGGAGGC TTTGCGAAGGTTCGGCCTGAAATACGATACATGGGCGGTTTAAGTGGGGG TGGTGACTTGGCAAAGGCGACGGCGGCAACGAGACCACATGGTGGGAACG CCGACCACCCCATCGATATCACGCCTTACGTTGTCGCGGTCCGCCGGTTC GCGGACTGGGCGCTCGCCGACCCGGACGAGCGGCGGGCGCGAGCGAGGCG TGGGGCGGACGGGAGGCTGGCAGCCGCGGCCGAGGCGGAGCGTAACCGTC GCTTTGTTGCGCTCCAGCGCCTCGTGAAACCACCGCCCTTGCCGACAGAA ACAACGGCTAACGGCGATGCCGCTGGTGAGAACAGGTACTCATTGGGAGA GTTCAAAAAGAGTTCCACGGAAAGGCTTTTGTCGTGTCCGGTGGGGGGGG GTGACAGGGGGACACCACGAGCCGGGGAAGGGTGGTCGTCGAGCGAAGGT AATAAGGAAAATGTGCGTTGCGCCGAGGAGCATGCTGGGTGGGGTTCGAA CGAAGCCCGCGAGAGGAACGCTCTAGTGAACCGGCTGCTCGAGGCCAATC GCGAGGTCTTGATCGGCCGGGAGGCTTTGCGAAGGTTCGGCCTGAAATAC GATACATGGGCGGTTTAA back to top
|