mRNA_M-pyrifera_M_contig88130.20471.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig88130.20471.1
Unique NamemRNA_M-pyrifera_M_contig88130.20471.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig88130.20471.1 vs. uniprot
Match: A0A2E7K931_9PLAN (Uncharacterized protein (Fragment) n=1 Tax=Gimesia sp. TaxID=2024833 RepID=A0A2E7K931_9PLAN)

HSP 1 Score: 490 bits (1261), Expect = 2.300e-173
Identity = 249/271 (91.88%), Postives = 256/271 (94.46%), Query Frame = 1
Query:    7 KGKLLLNLSDQNQAKGDATPVSEASLDPEGTWKAPQSGTFYLLVRDLYGVSLGGFERQYRVRITNRVPDFRVFAFPGELERKHGITLHPGGHTHVSLYVDRQHGYDKPVRIHAVDLPEGLTADDVIIPKHQSAAVLSIQTDRSLTPDILNLKLQATSEDQQLIREVQALTVTDAGTFAHVNTLAAGIAEPAPFMLTISPPQQPLTVGGKLELVAKLESGQSSISSPIELKWHTTMVDAKNKSVPLFKPTKSIPPTQTKSELTAILSDKLQP 819
            KGKLLL L+DQ QAKGDATPVS ASLDPEGTWKAPQSGTFYLLVRDLYGVSLGGFERQYRVRITNRVPDFRVFA+PGELERKHG TLHPGGHTHV+LYVDRQHG+DKPV IHAVDLPEGLTADDVIIPKHQSAAVLSIQTDRSLTPDILNL LQATSEDQQLIREVQ LTVTDAG F  VNTLAAGIAEPAP +LTI+PPQQPLTVGGKLELVAKLESGQSSISSPIELKWHT MVDAK KSVPLFKPTKSI PTQTKS+LTA LSDKLQP
Sbjct:    1 KGKLLLKLNDQKQAKGDATPVSAASLDPEGTWKAPQSGTFYLLVRDLYGVSLGGFERQYRVRITNRVPDFRVFAYPGELERKHGTTLHPGGHTHVALYVDRQHGFDKPVHIHAVDLPEGLTADDVIIPKHQSAAVLSIQTDRSLTPDILNLNLQATSEDQQLIREVQPLTVTDAGNFTQVNTLAAGIAEPAPVVLTIAPPQQPLTVGGKLELVAKLESGQSSISSPIELKWHTAMVDAKQKSVPLFKPTKSITPTQTKSKLTATLSDKLQP 271          
BLAST of mRNA_M-pyrifera_M_contig88130.20471.1 vs. uniprot
Match: A0A6I6A729_9PLAN (Uncharacterized protein n=5 Tax=Gimesia TaxID=1649453 RepID=A0A6I6A729_9PLAN)

HSP 1 Score: 489 bits (1258), Expect = 1.800e-167
Identity = 247/273 (90.48%), Postives = 258/273 (94.51%), Query Frame = 1
Query:    1 DDKGKLLLNLSDQNQAKGDATPVSEASLDPEGTWKAPQSGTFYLLVRDLYGVSLGGFERQYRVRITNRVPDFRVFAFPGELERKHGITLHPGGHTHVSLYVDRQHGYDKPVRIHAVDLPEGLTADDVIIPKHQSAAVLSIQTDRSLTPDILNLKLQATSEDQQLIREVQALTVTDAGTFAHVNTLAAGIAEPAPFMLTISPPQQPLTVGGKLELVAKLESGQSSISSPIELKWHTTMVDAKNKSVPLFKPTKSIPPTQTKSELTAILSDKLQP 819
            DDKGKLLLNLSDQ QAKGDATPVS ASLDPEGTWKAPQSG FYLLVRDLYGVSLGGFERQYRVRITNRVPDFRVFA+PGE ERKHGITLHP GHTHV+LYVDRQHG+DKPVRIHAVDLP+GLTADD++IPKHQSAAVLSIQTDRSL PDILNLKLQATSE+QQLIREVQ LTVTDAGTF HVNTLAAGIA+PAP +LTISPPQQPLTVGGKLEL  KLE+G SSISSPIELKWHT MVDAK KSVPLFKPTKSIPPTQTKS+ TAILSDKLQP
Sbjct:  392 DDKGKLLLNLSDQKQAKGDATPVSAASLDPEGTWKAPQSGMFYLLVRDLYGVSLGGFERQYRVRITNRVPDFRVFAYPGEQERKHGITLHPAGHTHVALYVDRQHGFDKPVRIHAVDLPKGLTADDIMIPKHQSAAVLSIQTDRSLKPDILNLKLQATSENQQLIREVQPLTVTDAGTFTHVNTLAAGIADPAPVVLTISPPQQPLTVGGKLELDVKLETGDSSISSPIELKWHTAMVDAKQKSVPLFKPTKSIPPTQTKSKPTAILSDKLQP 664          
BLAST of mRNA_M-pyrifera_M_contig88130.20471.1 vs. uniprot
Match: A0A350KK12_9PLAN (PPC domain-containing protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A350KK12_9PLAN)

HSP 1 Score: 286 bits (733), Expect = 3.120e-90
Identity = 150/275 (54.55%), Postives = 200/275 (72.73%), Query Frame = 1
Query:    1 DDKGKLLLNLSDQNQAKGDATPVSEASLDPEGTWKAPQSGTFYLLVRDLYGVSLGGFERQYRVRITNRVPDFRVFAFPGELERKHGITLHPGGHTHVSLYVDRQHGYDKPVRIHAVDLPEGLTADDVIIPKHQSAAVLSIQTDRSLTPDI--LNLKLQATSEDQQLIREVQALTVTDAGTFAHVNTLAAGIAEPAPFMLTISPPQQPLTVGGKLELVAKLESGQSSISSPIELKWHTTMVDAKNKSVPLFKPTKSIPPTQTKSELTAILSDKLQP 819
            D  GK+L +L+++ + KG ATPVS +SLDPEGTWKAP++ T+YLLVRDLYG SLGGF+RQYRVRI N+ PDF+V+A+P   +R  G++LH GGHTHV++YVDRQHG+ +PVRI AVDLPEGL+AD+VIIP HQS A  SI T ++    I  L+LK  AT +D++++++V+  TV+ +G+F  V TLAAG A+ APF +TI P Q    +G K+EL  + ES  S IS    LKWH  +VDAKNK   L KP  S+   Q+++ LTA L  K++P
Sbjct:  207 DSSGKVLKSLTNKAEVKGTATPVSASSLDPEGTWKAPKADTYYLLVRDLYGSSLGGFDRQYRVRIENKQPDFQVYAYPAAGDRYCGVSLHQGGHTHVTIYVDRQHGFSEPVRIQAVDLPEGLSADEVIIPAHQSEARFSIFTSKNAPQAIVPLSLKAIATVQDREVVKQVRPQTVSRSGSFQQVATLAAGTAKAAPFNMTIKPNQAKRALGEKIELDVQWESPGSEISGKPVLKWHIDLVDAKNKQASLIKPVTSLDLKQSENTLTAQLPQKVKP 481          
BLAST of mRNA_M-pyrifera_M_contig88130.20471.1 vs. uniprot
Match: A0A355GA07_9PLAN (Uncharacterized protein n=2 Tax=Planctomycetaceae TaxID=126 RepID=A0A355GA07_9PLAN)

HSP 1 Score: 286 bits (732), Expect = 2.540e-88
Identity = 152/275 (55.27%), Postives = 200/275 (72.73%), Query Frame = 1
Query:    1 DDKGKLLLNLSDQNQAKGDATPVSEASLDPEGTWKAPQSGTFYLLVRDLYGVSLGGFERQYRVRITNRVPDFRVFAFPGELERKHGITLHPGGHTHVSLYVDRQHGYDKPVRIHAVDLPEGLTADDVIIPKHQSAAVLSIQTDRSLTPDILNLKLQA--TSEDQQLIREVQALTVTDAGTFAHVNTLAAGIAEPAPFMLTISPPQQPLTVGGKLELVAKLESGQSSISSPIELKWHTTMVDAKNKSVPLFKPTKSIPPTQTKSELTAILSDKLQP 819
            D  GKLL +L+D+  AKG ATPVS ASLDPEGTWKAP+S T+YLLVRDLYG SLGGF+RQYRVRI N+ PDF+ +A P + +R  GI+LH GGHTHV++YVDRQHG+ +PVRI AVDLPEGL+AD+VIIP HQS A  +I T+++   +I++L L+A  T +D++++++VQ  T + + +F  V TLAAGIA+PA F + I P Q  L +G K+EL  + +S  S IS    LKWH  +VDAK K V L KP  S+    +++ LTA L  K+QP
Sbjct:  400 DSSGKLLKSLTDKAAAKGTATPVSAASLDPEGTWKAPKSDTYYLLVRDLYGSSLGGFDRQYRVRIENKQPDFQAYAHPADSDRYSGISLHQGGHTHVAIYVDRQHGFSEPVRIQAVDLPEGLSADEVIIPAHQSEARFAIFTNKNTPRNIVSLSLKAVATVQDREIVKQVQPQTDSRSNSFQQVATLAAGIAKPASFSMKIKPRQGKLALGEKVELDVQWKSTGSEISGNPVLKWHIDLVDAKGKQVSLIKPVTSLDLKFSENLLTAQLPPKMQP 674          
BLAST of mRNA_M-pyrifera_M_contig88130.20471.1 vs. uniprot
Match: UPI0018D6457D (PPC domain-containing protein n=1 Tax=Gimesia maris TaxID=122 RepID=UPI0018D6457D)

HSP 1 Score: 284 bits (727), Expect = 9.460e-88
Identity = 148/275 (53.82%), Postives = 197/275 (71.64%), Query Frame = 1
Query:    1 DDKGKLLLNLSDQNQAKGDATPVSEASLDPEGTWKAPQSGTFYLLVRDLYGVSLGGFERQYRVRITNRVPDFRVFAFPGELERKHGITLHPGGHTHVSLYVDRQHGYDKPVRIHAVDLPEGLTADDVIIPKHQSAAVLSIQTDRSLTPDI--LNLKLQATSEDQQLIREVQALTVTDAGTFAHVNTLAAGIAEPAPFMLTISPPQQPLTVGGKLELVAKLESGQSSISSPIELKWHTTMVDAKNKSVPLFKPTKSIPPTQTKSELTAILSDKLQP 819
            D  GK+L +L+++ + KG+ATPVS  SLDPEGTWKAP++ T+ LLVRDLYG SLGGF+RQYRVRI N+ PDF+ +A+P   +R  G++LH GGHTHV++YVDR+HG+ +P+RI AVDLPEGL+AD+VIIP HQS A  SI T ++    I  L+LK  AT +DQ+++++V+  TV+ +G+F  V TLAAG A+ APF +TI P Q   T+G K+EL  + ES  S IS    LKWH  +VDAK K   L KP  S+   Q++  LTA L  K+QP
Sbjct:  360 DSSGKVLKSLTNKAELKGNATPVSATSLDPEGTWKAPKADTYSLLVRDLYGSSLGGFDRQYRVRIENKQPDFQAYAYPATSDRYSGVSLHQGGHTHVTIYVDRRHGFSEPIRIQAVDLPEGLSADEVIIPAHQSEARFSIFTSKNAPQTIVPLSLKAIATVQDQEVVKQVRPQTVSRSGSFQQVATLAAGTAKAAPFNMTIKPQQGKRTLGEKIELDVQWESAGSEISGKPVLKWHIDLVDAKGKQASLIKPVTSLDLKQSEHTLTAQLPKKMQP 634          
BLAST of mRNA_M-pyrifera_M_contig88130.20471.1 vs. uniprot
Match: A6CCW3_9PLAN (Probable serine proteinase, subtilase family n=3 Tax=Gimesia maris TaxID=122 RepID=A6CCW3_9PLAN)

HSP 1 Score: 283 bits (724), Expect = 2.520e-87
Identity = 149/275 (54.18%), Postives = 194/275 (70.55%), Query Frame = 1
Query:    1 DDKGKLLLNLSDQNQAKGDATPVSEASLDPEGTWKAPQSGTFYLLVRDLYGVSLGGFERQYRVRITNRVPDFRVFAFPGELERKHGITLHPGGHTHVSLYVDRQHGYDKPVRIHAVDLPEGLTADDVIIPKHQSAAVLSIQTDRSLTPDI--LNLKLQATSEDQQLIREVQALTVTDAGTFAHVNTLAAGIAEPAPFMLTISPPQQPLTVGGKLELVAKLESGQSSISSPIELKWHTTMVDAKNKSVPLFKPTKSIPPTQTKSELTAILSDKLQP 819
            D  GK+L +L+++ + KG+ATPVS  SLDPEGTWKAP+SGT+ LLVRDLYG SLG F+RQYRVRI N+ PDF+V+A+P   +R  G++LH GGHTHV++YVDRQHG+ +PVRI AVDLPEGL+AD+ IIP HQS A  SI T ++    I  L+LK  AT +DQQ++++V   TV+ +G+F  V TL AG A+ APF +TI P Q    +G K+EL  + ES  S IS    LKWH  +VDAK K   L KP  S+   Q+++ LTA L   +QP
Sbjct:  370 DSSGKVLKSLTNKAEVKGNATPVSATSLDPEGTWKAPKSGTYALLVRDLYGSSLGDFDRQYRVRIENKQPDFQVYAYPAASDRYSGVSLHQGGHTHVTIYVDRQHGFSEPVRIQAVDLPEGLSADEAIIPAHQSEARFSIFTSKNAPQTIVPLSLKAIATVQDQQVVKQVHPQTVSRSGSFQQVATLTAGTAKAAPFNMTIKPNQAKRALGEKIELDVQWESAGSEISGKPVLKWHIDLVDAKGKQASLIKPVTSLDLKQSENILTAQLPQNVQP 644          
BLAST of mRNA_M-pyrifera_M_contig88130.20471.1 vs. uniprot
Match: A0A3D3R2A9_9PLAN (PPC domain-containing protein (Fragment) n=1 Tax=Gimesia maris TaxID=122 RepID=A0A3D3R2A9_9PLAN)

HSP 1 Score: 158 bits (400), Expect = 1.230e-41
Identity = 71/107 (66.36%), Postives = 90/107 (84.11%), Query Frame = 1
Query:    1 DDKGKLLLNLSDQNQAKGDATPVSEASLDPEGTWKAPQSGTFYLLVRDLYGVSLGGFERQYRVRITNRVPDFRVFAFPGELERKHGITLHPGGHTHVSLYVDRQHGY 321
            D  GK+L +L+++ + KG+ATPVS  SLDPEGTWKAP++GT+YLLVRDLYG SLG F+RQYRVRI N+ PDFRV+A+P   +R  GI+LH GGHTHV++YVDRQHG+
Sbjct:  380 DSSGKVLKSLTNKAEVKGNATPVSAKSLDPEGTWKAPKAGTYYLLVRDLYGSSLGSFDRQYRVRIENKQPDFRVYAYPTASDRYSGISLHQGGHTHVTIYVDRQHGF 486          
BLAST of mRNA_M-pyrifera_M_contig88130.20471.1 vs. uniprot
Match: A0A3D3R5K1_9PLAN (Uncharacterized protein (Fragment) n=2 Tax=Gimesia TaxID=1649453 RepID=A0A3D3R5K1_9PLAN)

HSP 1 Score: 124 bits (310), Expect = 6.610e-31
Identity = 75/160 (46.88%), Postives = 101/160 (63.12%), Query Frame = 1
Query:  346 VDLPEGLTADDVIIPKHQSAAVLSIQTDRSLTPDI--LNLKLQATSEDQQLIREVQALTVTDAGTFAHVNTLAAGIAEPAPFMLTISPPQQPLTVGGKLELVAKLESGQSSISSPIELKWHTTMVDAKNKSVPLFKPTKSIPPTQTKSELTAILSDKLQP 819
            VDLPEGL+AD+VIIP HQS A  SI T ++    I  L+LK  AT +DQ++++++   TV+ +G+F  V TLAAG  + APF +TI   Q   T+G K+EL  + ES  S IS    LKWH  +VDAK K   L KP  S+   Q+++ LTA L  K+QP
Sbjct:    1 VDLPEGLSADEVIIPAHQSEARFSIFTSKNAPQTIVPLSLKAIATVQDQKVVKQIHPQTVSRSGSFQQVATLAAGTTKAAPFNMTIKAQQGKRTLGEKIELDVQWESPGSEISGKPVLKWHIDLVDAKGKQASLIKPVTSLDLKQSENTLTAQLPKKMQP 160          
BLAST of mRNA_M-pyrifera_M_contig88130.20471.1 vs. uniprot
Match: A0A3M1VFR9_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3M1VFR9_9BACT)

HSP 1 Score: 62.8 bits (151), Expect = 1.930e-7
Identity = 41/134 (30.60%), Postives = 59/134 (44.03%), Query Frame = 1
Query:   10 GKLLLNLSDQNQAKGDATPVSEASLDPEGTWKAPQSGTFYLLVRDLYGVSLGGFERQYRVRITNRVPDFRVFAFP--------GELERKHGITLHPGGHTHVSLYVDRQHGYDKPVRIHAVDLPEGLTADDVII 387
            G   +   D      D T     S DP  +   P  G + L +RD Y  S G  +  YR+ + +  PDFRV   P                +TL  GG   +   V R+ G+  PVR+H   LP+G+TA+DV++
Sbjct:  405 GTRRITAQDDLTTAPDPTLFDTRSDDPVFSVTLPADGRYLLTLRDRYFESRGRPDMVYRLILRDPRPDFRVVVVPYTPTVATNNAQAAPWPLTLRRGGTLALKALVQRRDGFTGPVRVHLEGLPQGVTAEDVVV 538          
BLAST of mRNA_M-pyrifera_M_contig88130.20471.1 vs. uniprot
Match: A0A3L7VLB0_9BACT (Ig-like domain-containing protein (Fragment) n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3L7VLB0_9BACT)

HSP 1 Score: 58.5 bits (140), Expect = 4.360e-6
Identity = 49/170 (28.82%), Postives = 78/170 (45.88%), Query Frame = 1
Query:   73 EASLDPEGTWKAPQSGTFYLLVRDLYGVSLGGFERQYRVRITNRVP--DFRVFAFP-GELERKHGITLHPGGHTHVSLYVDRQHGYDKPVRIHAVDLPEGLTADDVIIP--KHQSAAVLSIQTDRSLTPDILNLKLQATSEDQQLIREVQALTVTDAGTFAHVNTLAAGI 567
            E + DP   +KAP+ GT+ +L++D  GVS    + +   R+  R P  DFRV A P G  +   G+ L  GG   + +   RQ  +D  + + A  LP G+T +D+II    H    +L+           L L  +AT    ++ R  +      +  FA  N+  A +
Sbjct:  456 ERTSDPSLVFKAPEDGTYRILLKD--GVSSVKSDPRLIYRMAIRKPQLDFRVVAVPDGSTD---GLMLRKGGREVIHIVAYRQDQFDGEITVSATGLPAGVTTEDIIIGPGNHYGTLILTAADAAPAGIGTLLLTAKATINGAEVTRPARYGEALKSFQFAQPNSNLASV 620          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig88130.20471.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A2E7K931_9PLAN2.300e-17391.88Uncharacterized protein (Fragment) n=1 Tax=Gimesia... [more]
A0A6I6A729_9PLAN1.800e-16790.48Uncharacterized protein n=5 Tax=Gimesia TaxID=1649... [more]
A0A350KK12_9PLAN3.120e-9054.55PPC domain-containing protein n=1 Tax=Planctomycet... [more]
A0A355GA07_9PLAN2.540e-8855.27Uncharacterized protein n=2 Tax=Planctomycetaceae ... [more]
UPI0018D6457D9.460e-8853.82PPC domain-containing protein n=1 Tax=Gimesia mari... [more]
A6CCW3_9PLAN2.520e-8754.18Probable serine proteinase, subtilase family n=3 T... [more]
A0A3D3R2A9_9PLAN1.230e-4166.36PPC domain-containing protein (Fragment) n=1 Tax=G... [more]
A0A3D3R5K1_9PLAN6.610e-3146.88Uncharacterized protein (Fragment) n=2 Tax=Gimesia... [more]
A0A3M1VFR9_9BACT1.930e-730.60Uncharacterized protein (Fragment) n=1 Tax=Plancto... [more]
A0A3L7VLB0_9BACT4.360e-628.82Ig-like domain-containing protein (Fragment) n=1 T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig88130contigM-pyrifera_M_contig88130:1..819 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score290.0
Seed ortholog evalue1.1e-75
Seed eggNOG ortholog344747.PM8797T_02239
Preferred namertxA
KEGG koko:K10953
KEGG Pathwayko05110,map05110
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0000287,GO:0000822,GO:0001897,GO:0001906,GO:0001907,GO:0003674,GO:0003824,GO:0004175,GO:0004197,GO:0005488,GO:0005509,GO:0005524,GO:0005575,GO:0005576,GO:0006464,GO:0006508,GO:0006807,GO:0006996,GO:0007010,GO:0007015,GO:0008144,GO:0008150,GO:0008152,GO:0008154,GO:0008233,GO:0008234,GO:0009405,GO:0009987,GO:0010467,GO:0016043,GO:0016485,GO:0016540,GO:0016787,GO:0016874,GO:0016879,GO:0016881,GO:0017076,GO:0018149,GO:0018153,GO:0018193,GO:0018199,GO:0018205,GO:0018262,GO:0018995,GO:0019538,GO:0019835,GO:0019836,GO:0020002,GO:0022411,GO:0030029,GO:0030036,GO:0030042,GO:0030554,GO:0031640,GO:0032553,GO:0032555,GO:0032559,GO:0032984,GO:0033643,GO:0033644,GO:0035639,GO:0035821,GO:0036094,GO:0036211,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043178,GO:0043412,GO:0043624,GO:0043657,GO:0043933,GO:0044003,GO:0044004,GO:0044179,GO:0044215,GO:0044216,GO:0044217,GO:0044218,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044279,GO:0044364,GO:0044403,GO:0044419,GO:0044764,GO:0046872,GO:0051261,GO:0051604,GO:0051701,GO:0051704,GO:0051715,GO:0051801,GO:0051817,GO:0051818,GO:0051883,GO:0052331,GO:0070011,GO:0071704,GO:0071840,GO:0097159,GO:0097367,GO:0097435,GO:0140096,GO:1901265,GO:1901363,GO:1901564
EggNOG free text desc.Membrane
EggNOG OGs2IX64@203682,COG3064@1,COG3064@2
COG Functional cat.M
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02042
Exons1
Model size819
Cds size819
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816790.8313987-CDS-M-pyrifera_M_contig88130:0..8191622816790.8313987-CDS-M-pyrifera_M_contig88130:0..819Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88130 1..819 -
1692278180.2460349-CDS-M-pyrifera_M_contig88130:0..8191692278180.2460349-CDS-M-pyrifera_M_contig88130:0..819Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88130 1..819 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig88130.20471.1prot_M-pyrifera_M_contig88130.20471.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig88130 1..819 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig88130.20471.1

>prot_M-pyrifera_M_contig88130.20471.1 ID=prot_M-pyrifera_M_contig88130.20471.1|Name=mRNA_M-pyrifera_M_contig88130.20471.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=273bp
DDKGKLLLNLSDQNQAKGDATPVSEASLDPEGTWKAPQSGTFYLLVRDLY
GVSLGGFERQYRVRITNRVPDFRVFAFPGELERKHGITLHPGGHTHVSLY
VDRQHGYDKPVRIHAVDLPEGLTADDVIIPKHQSAAVLSIQTDRSLTPDI
LNLKLQATSEDQQLIREVQALTVTDAGTFAHVNTLAAGIAEPAPFMLTIS
PPQQPLTVGGKLELVAKLESGQSSISSPIELKWHTTMVDAKNKSVPLFKP
TKSIPPTQTKSELTAILSDKLQP
back to top

mRNA from alignment at M-pyrifera_M_contig88130:1..819-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig88130.20471.1 ID=mRNA_M-pyrifera_M_contig88130.20471.1|Name=mRNA_M-pyrifera_M_contig88130.20471.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=819bp|location=Sequence derived from alignment at M-pyrifera_M_contig88130:1..819- (Macrocystis pyrifera P11B4 male)
GATGACAAGGGCAAACTGCTCCTGAATCTCTCAGATCAGAACCAGGCCAA AGGGGACGCCACCCCCGTCTCGGAAGCCTCTCTGGATCCGGAGGGAACCT GGAAGGCTCCCCAGTCGGGCACGTTCTATCTACTGGTACGTGATCTGTAT GGCGTGAGCCTGGGTGGCTTTGAGCGACAGTACCGGGTGCGTATCACAAA CAGAGTGCCGGACTTTCGCGTCTTCGCTTTTCCGGGTGAGTTGGAGCGGA AACACGGAATCACGTTGCATCCGGGGGGACACACGCACGTCTCGCTCTAC GTTGACCGACAGCATGGATATGACAAACCCGTCCGCATTCACGCCGTCGA TCTCCCCGAGGGGCTGACTGCCGACGATGTCATCATCCCCAAACACCAGT CAGCAGCAGTGCTTTCGATTCAGACGGACCGCAGTCTGACACCAGATATT CTCAACCTGAAACTGCAGGCAACGTCCGAGGATCAGCAGCTTATCCGTGA AGTTCAGGCTCTGACAGTCACTGATGCCGGCACCTTCGCACACGTTAATA CACTCGCAGCAGGCATCGCTGAACCAGCCCCCTTTATGTTGACGATCTCA CCACCACAACAACCGCTGACCGTGGGTGGTAAACTGGAACTGGTAGCGAA GTTGGAAAGTGGCCAATCATCGATTTCATCGCCCATCGAATTGAAGTGGC ACACGACGATGGTCGATGCCAAAAACAAGAGCGTCCCCTTATTCAAGCCC ACGAAATCGATCCCCCCCACTCAAACCAAGAGTGAACTGACAGCCATCCT GTCAGATAAACTGCAGCCG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig88130:1..819-

>mRNA_M-pyrifera_M_contig88130.20471.1 ID=mRNA_M-pyrifera_M_contig88130.20471.1|Name=mRNA_M-pyrifera_M_contig88130.20471.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1638bp|location=Sequence derived from alignment at M-pyrifera_M_contig88130:1..819- (Macrocystis pyrifera P11B4 male)
GATGACAAGGGCAAACTGCTCCTGAATCTCTCAGATCAGAACCAGGCCAA
AGGGGACGCCACCCCCGTCTCGGAAGCCTCTCTGGATCCGGAGGGAACCT
GGAAGGCTCCCCAGTCGGGCACGTTCTATCTACTGGTACGTGATCTGTAT
GGCGTGAGCCTGGGTGGCTTTGAGCGACAGTACCGGGTGCGTATCACAAA
CAGAGTGCCGGACTTTCGCGTCTTCGCTTTTCCGGGTGAGTTGGAGCGGA
AACACGGAATCACGTTGCATCCGGGGGGACACACGCACGTCTCGCTCTAC
GTTGACCGACAGCATGGATATGACAAACCCGTCCGCATTCACGCCGTCGA
TCTCCCCGAGGGGCTGACTGCCGACGATGTCATCATCCCCAAACACCAGT
CAGCAGCAGTGCTTTCGATTCAGACGGACCGCAGTCTGACACCAGATATT
CTCAACCTGAAACTGCAGGCAACGTCCGAGGATCAGCAGCTTATCCGTGA
AGTTCAGGCTCTGACAGTCACTGATGCCGGCACCTTCGCACACGTTAATA
CACTCGCAGCAGGCATCGCTGAACCAGCCCCCTTTATGTTGACGATCTCA
CCACCACAACAACCGCTGACCGTGGGTGGTAAACTGGAACTGGTAGCGAA
GTTGGAAAGTGGCCAATCATCGATTTCATCGCCCATCGAATTGAAGTGGC
ACACGACGATGGTCGATGCCAAAAACAAGAGCGTCCCCTTATTCAAGCCC
ACGAAATCGATCCCCCCCACTCAAACCAAGAGTGAACTGACAGCCATCCT
GTCAGATAAACTGCAGCCGGATGACAAGGGCAAACTGCTCCTGAATCTCT
CAGATCAGAACCAGGCCAAAGGGGACGCCACCCCCGTCTCGGAAGCCTCT
CTGGATCCGGAGGGAACCTGGAAGGCTCCCCAGTCGGGCACGTTCTATCT
ACTGGTACGTGATCTGTATGGCGTGAGCCTGGGTGGCTTTGAGCGACAGT
ACCGGGTGCGTATCACAAACAGAGTGCCGGACTTTCGCGTCTTCGCTTTT
CCGGGTGAGTTGGAGCGGAAACACGGAATCACGTTGCATCCGGGGGGACA
CACGCACGTCTCGCTCTACGTTGACCGACAGCATGGATATGACAAACCCG
TCCGCATTCACGCCGTCGATCTCCCCGAGGGGCTGACTGCCGACGATGTC
ATCATCCCCAAACACCAGTCAGCAGCAGTGCTTTCGATTCAGACGGACCG
CAGTCTGACACCAGATATTCTCAACCTGAAACTGCAGGCAACGTCCGAGG
ATCAGCAGCTTATCCGTGAAGTTCAGGCTCTGACAGTCACTGATGCCGGC
ACCTTCGCACACGTTAATACACTCGCAGCAGGCATCGCTGAACCAGCCCC
CTTTATGTTGACGATCTCACCACCACAACAACCGCTGACCGTGGGTGGTA
AACTGGAACTGGTAGCGAAGTTGGAAAGTGGCCAATCATCGATTTCATCG
CCCATCGAATTGAAGTGGCACACGACGATGGTCGATGCCAAAAACAAGAG
CGTCCCCTTATTCAAGCCCACGAAATCGATCCCCCCCACTCAAACCAAGA
GTGAACTGACAGCCATCCTGTCAGATAAACTGCAGCCG
back to top