mRNA_M-pyrifera_M_contig88090.20462.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig88090.20462.1
Unique NamemRNA_M-pyrifera_M_contig88090.20462.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig88090.20462.1 vs. uniprot
Match: A0A3D1G9K3_9BACT (Por_Secre_tail domain-containing protein n=1 Tax=Balneolaceae bacterium TaxID=2053516 RepID=A0A3D1G9K3_9BACT)

HSP 1 Score: 394 bits (1011), Expect = 2.130e-133
Identity = 190/274 (69.34%), Postives = 231/274 (84.31%), Query Frame = 1
Query:    1 DSPIYKYDSNLENEEVLVTLTGSFSRDMQVSADGNTIWWAGYTLGSVLKYTKPDEFSGFSATPDTVLRGIRSEVFDIHPVTGYLWVGSGSLNDVPGAPYQPQTWYAFDVADIGTD-NEAPIDSINWVAGADIAAGFDNARPRGLDFSADGKTAYISVFSGVDTDVDVQKFTTEQVFVSNEEEDISGVPEGFKLSQNYPNPFNPTTNIEFSLNESGATSLKVYDLTGREVASLVDSRLSAGEHSVSFDASNLSSGVYVYILQSNGIRLANKMTLI 819
            D+PI KYDSNLEN E L+TLTGSFSRD+QV+ DGNTI+W+GYT G+V KYTKPDEFSGF+ATPDTVLRG+R E +DIHPVTGYLWVGSGSLNDVP AP+ PQTWYAFD   +       P+DSI+WV GAD++ GFD ARPRGLDFSADGKTAY+S F+  +TDVDVQ FTTEQVF S E+E  + +P GFKL QNYPNPFNPTTNI +++ +SG  +LKVYD+TGREVA+LV++  SAG+++V+F+AS LSSG+Y+Y L+SNG+RL NKMTL+
Sbjct:  183 DTPILKYDSNLENPETLITLTGSFSRDLQVAPDGNTIFWSGYTNGAVFKYTKPDEFSGFNATPDTVLRGMRVESYDIHPVTGYLWVGSGSLNDVPAAPWTPQTWYAFDWTTLEDGVTPTPLDSIHWVPGADVSGGFDQARPRGLDFSADGKTAYVSAFAAAETDVDVQVFTTEQVFTSVEDE-TAELPSGFKLDQNYPNPFNPTTNINYTVGKSGFVTLKVYDITGREVATLVNATRSAGDYTVTFNASGLSSGLYIYSLESNGVRLTNKMTLL 455          
BLAST of mRNA_M-pyrifera_M_contig88090.20462.1 vs. uniprot
Match: A0A1B6YDY5_9BACT (Por_Secre_tail domain-containing protein n=6 Tax=unclassified Balneola TaxID=2615059 RepID=A0A1B6YDY5_9BACT)

HSP 1 Score: 384 bits (985), Expect = 2.410e-129
Identity = 186/276 (67.39%), Postives = 226/276 (81.88%), Query Frame = 1
Query:    1 DSPIYKYDSNLENEEVLVTLTGSFSRDMQVSADGNTIWWAGYTLGSVLKYTKPDEFSGFSATPDTVLRGIRSEVFDIHPVTGYLWVGSGSLNDVPGAPYQPQTWYAFDVADIGTDNEAPIDSINWVAGA---DIAAGFDNARPRGLDFSADGKTAYISVFSGVDTDVDVQKFTTEQVFVSNEEEDISGVPEGFKLSQNYPNPFNPTTNIEFSLNESGATSLKVYDLTGREVASLVDSRLSAGEHSVSFDASNLSSGVYVYILQSNGIRLANKMTLI 819
            D+PIYKYDSNLENEEV++T T SFSRD+QVSADG TIWWAGYT G VL+Y KPDEFSGF   PDTVLRGIR+E FD+HP T +LWVG+GSLNDVP APY PQTWYAFD   +GT +E P+DSI W AGA   D    FD  RPR LDF A+G  AY+ VFSG DT  D+QKFTT QV+ SNE  DI+ +PEGFKL QNYPNPFNPTTNI ++++++G  +L+VYD+TGREVA+LV++R +AG+H+V+FDA+NL+SGVY+Y LQ+NG+RL N+MTLI
Sbjct:  190 DAPIYKYDSNLENEEVVITTTASFSRDVQVSADGQTIWWAGYTNGFVLRYQKPDEFSGFGV-PDTVLRGIRAESFDLHPKTKHLWVGAGSLNDVPDAPYTPQTWYAFDYDALGTASEEPLDSIRWSAGAWNPDFTGEFDAGRPRALDFEAEGTVAYVGVFSGGDTPYDLQKFTTTQVYTSNEG-DINEIPEGFKLGQNYPNPFNPTTNINYTIDQAGLVTLRVYDITGREVATLVNNRKNAGDHTVTFDATNLASGVYIYTLQANGVRLTNRMTLI 463          
BLAST of mRNA_M-pyrifera_M_contig88090.20462.1 vs. uniprot
Match: A0A2E6N3Z4_9BACT (Por_Secre_tail domain-containing protein n=1 Tax=Balneola sp. TaxID=2024824 RepID=A0A2E6N3Z4_9BACT)

HSP 1 Score: 318 bits (814), Expect = 2.410e-103
Identity = 159/280 (56.79%), Postives = 210/280 (75.00%), Query Frame = 1
Query:    7 PIYKYDSNLENEEVLVTLTGSFSRDMQVSADGNTIWWAGYTLGSVLKYTKPDEFSGFSATPDTVLRGIRSEVFDIHPVTGYLWVGSGSLNDVPGAPYQPQTWYAFDVADIGTDNEAPIDSINWVAGADIAAG---FDNARPRGLDFSADGKTAYISVFS-----GVDTDVD-VQKFTTEQVFVSNEEEDISGVPEGFKLSQNYPNPFNPTTNIEFSLNESGATSLKVYDLTGREVASLVDSRLSAGEHSVSFDASNLSSGVYVYILQSNGIRLANKMTLI 819
            P+ K+  +L  EE LVT+ GS+SRDMQVSADGNTIWWAGYT G++ ++++ DEFS F    DTVL G++SE FDIHPVTG++WVGSGS+ DVPGAP+ PQ WY+FD++ IGTDNE P+DSI+W    ++  G   FD+ARPRG+DFSADG TAY+  F+      + T     QKF +      N  E I+ +P+GF L QNYPNPFNPTTNI +SL  +   +LKV+D+TGRE+ +LV+ R++AG H+V+F+ASNLSSGVY+Y L++NG+RL N+MTLI
Sbjct:  203 PLVKFGPDLTGEETLVTIPGSYSRDMQVSADGNTIWWAGYTNGAIHRFSRADEFSSFGDA-DTVLVGLKSESFDIHPVTGHMWVGSGSMYDVPGAPWLPQRWYSFDISTIGTDNETPLDSIHW----ELTEGDGPFDDARPRGMDFSADGMTAYVVSFATSGWGSLPTGKSGAQKFNSAD---GNSNELINNLPKGFTLDQNYPNPFNPTTNINYSLQNASHVTLKVFDMTGREITTLVNGRMNAGAHTVTFNASNLSSGVYIYALEANGVRLTNRMTLI 474          
BLAST of mRNA_M-pyrifera_M_contig88090.20462.1 vs. uniprot
Match: UPI00037846B5 (T9SS type A sorting domain-containing protein n=1 Tax=Gracilimonas tropica TaxID=454600 RepID=UPI00037846B5)

HSP 1 Score: 301 bits (772), Expect = 3.230e-97
Identity = 149/277 (53.79%), Postives = 197/277 (71.12%), Query Frame = 1
Query:    7 PIYKYDSNLENEEVLVTLTGSFSRDMQVSADGNTIWWAGYTLGSVLKYTKPDEFSGFSATPDTVLRGIRSEVFDIHPVTGYLWVGSGSLNDVPG------APYQPQTWYAFDVADIGTDNEAPIDSINWVAGADIAAGFDNARPRGLDFSADGKTAYISVFSGVDTDVDVQKFTTEQVFVSNEEEDISGVPEGFKLSQNYPNPFNPTTNIEFSLNESGATSLKVYDLTGREVASLVDSRLSAGEHSVSFDASNLSSGVYVYILQSNGIRLANKMTLI 819
            PI +Y+ +L    V++  +  FSR  +VS DGNTIWWAGY   ++  Y +P  F GF   PDT L+G+R E FDIHPVT YLWV +GS ND P       + ++  TWYAFD A++GT++E  +DS++W       +G  + RPR +DFS DG  AY+  F+    +  VQKFTT+QVF SNE E ++ +P+G++L QNYPNPFNPTTNI +S+NE+G  +LKVYD+TGREVA+LV+ R+SAG H V+FDASNLSSGVY+Y LQ+NG+RL NKMTLI
Sbjct:  187 PIIQYNPDLTYNGVVIDESVGFSRGFEVSEDGNTIWWAGYDNNALFIYQRPSAFEGFDQVPDTALKGMRIESFDIHPVTKYLWVSAGSPNDPPNQYPGTASSWRMHTWYAFDYANLGTEDEVALDSLSWNL---EGSGPQDGRPRAIDFSPDGTIAYVGQFN--QPEFGVQKFTTDQVFTSNENEGVAEIPKGYELDQNYPNPFNPTTNINYSINEAGPVTLKVYDMTGREVATLVNERMSAGSHQVTFDASNLSSGVYLYSLQANGVRLTNKMTLI 458          
BLAST of mRNA_M-pyrifera_M_contig88090.20462.1 vs. uniprot
Match: A0A7V3FWU9_9BACT (T9SS type A sorting domain-containing protein n=1 Tax=Ignavibacteria bacterium TaxID=2053306 RepID=A0A7V3FWU9_9BACT)

HSP 1 Score: 220 bits (560), Expect = 1.060e-65
Identity = 129/272 (47.43%), Postives = 166/272 (61.03%), Query Frame = 1
Query:    4 SPIYKYDSNLENEEVLVTLTGSFSRDMQVSADGNTIWWAGYTLGSVLKYTKPDEFSGFSATPDTVLRGIRSEVFDIHPVT-GYLWVGSGSLNDVPGAPYQPQTWYAFDVADIGTDNEAPIDSINWVAGADIAAGFDNARPRGLDFSADGKTAYISVFSGVDTDVDVQKFTTEQVFVSNEEEDISGVPEGFKLSQNYPNPFNPTTNIEFSLNESGATSLKVYDLTGREVASLVDSRLSAGEHSVSFDASNLSSGVYVYILQSNGIRLANKMTL 816
            +PI  YD N       +  T SFSR  +VSADGNTI+WAGYTLG V+ Y + DEFS F A  D++++G  +E F  HPV    LW+  GS ND P  PY   TWYA+DV       +  +DS+ W   AD      + RPR L FS DGK AYI  F   ++D+ +QK     VF  +  E +  +P G+ LSQNYPNPFNPTTNI+FS+ + G  +LKV++  G+EVASLV+   SAG + V FDA NLSSGVYVY L     +++ KM L
Sbjct:  175 NPIEMYDQNFTLLGNALNGTTSFSRSFEVSADGNTIYWAGYTLGKVMVYNRADEFSSF-ALKDSIMQGAAAESFTWHPVNKNQLWISGGSNNDKPKPPYTMGTWYAYDVV-----QKKVVDSLKWKY-ADATK--PDERPRALAFSPDGKIAYIGSFGTANSDL-LQKV----VFGGSAVEKLDEIPTGYDLSQNYPNPFNPTTNIKFSIPKEGFVTLKVFNTLGQEVASLVNDFKSAGSYQVDFDAKNLSSGVYVYTLFVGNYKISKKMML 432          
BLAST of mRNA_M-pyrifera_M_contig88090.20462.1 vs. uniprot
Match: A0A1V5TEN1_9BACT (Por_Secre_tail domain-containing protein n=2 Tax=unclassified Ignavibacteriae TaxID=1852932 RepID=A0A1V5TEN1_9BACT)

HSP 1 Score: 209 bits (532), Expect = 1.330e-61
Identity = 121/270 (44.81%), Postives = 164/270 (60.74%), Query Frame = 1
Query:   13 YKYDSNLENEEVLVTLTGSFSRDMQVSADGNTIWWAGYTLGSVLKYTKPDEFSGFSATPDTVLRGIRSEVFDIHPVTGYLWVGSGSLNDVPGAPYQPQTWYAFDVADIGTDNEAPIDSINWVAGADIAAGFDNA-RPRGLDFSADGKTAYISVFSGVDTDVDVQKFTTEQVFVSNEEEDISGVPEGFKLSQNYPNPFNPTTNIEFSLNESGATSLKVYDLTGREVASLVDSRLSAGEHSVSFDASNLSSGVYVYILQSNGIRLANKMTLI 819
            Y  D N   + V  +L+G FSR M+ SADGNT+++  Y+ G ++ Y +PDE S F +   T++ G   E    +  TG+LW  +GS ND P  PY P TWY +++A         +DS+ W    +     + A RPR +DFS +G TAYI  F G    + VQK   + V V ++ E +     G+KLSQNYPNPFNPTT I F L+ SG T+LK+YD+ G EVA+LV   LSAG HSV+F+ASNL+SG Y+Y L  NG R+ NKM L+
Sbjct:  173 YDADFNYVGDAVSFSLSG-FSRSMECSADGNTLYFPSYSRGLIIVYHRPDELSAFDSV-GTIMDGFDCESIVFNKATGHLWASAGSYNDQPDPPYTPNTWYEYNLA-----TNQVLDSLKW----EFVVPLNPAERPRAIDFSPNGNTAYIGCFGGSGYML-VQK-VDKLVGVEDQGEVVVN---GYKLSQNYPNPFNPTTKINFELSSSGYTTLKIYDMLGNEVATLVQGELSAGTHSVNFNASNLASGTYLYQLNVNGTRITNKMVLL 426          
BLAST of mRNA_M-pyrifera_M_contig88090.20462.1 vs. uniprot
Match: A0A0P7X3B6_9BACT (Extracellular protein n=1 Tax=Bacteroidetes bacterium HLUCCA01 TaxID=1666909 RepID=A0A0P7X3B6_9BACT)

HSP 1 Score: 209 bits (531), Expect = 2.460e-61
Identity = 121/282 (42.91%), Postives = 156/282 (55.32%), Query Frame = 1
Query:   19 YDSNLENEEVLVTLTGSFSRDMQVSADGNTIWWAGYTLGSVLKYTKPDEFSGFSATPDTVLRGIRSEVFDIHPVTGYLWVGSGSLNDVP--------GAPYQPQTWYAFD-----VADIGT--DNEAPIDSINWVAGADIAAGFDNARPRGLDFSADGKTAYISVFSGVDTDVDVQKFTTEQVFVSNEEEDISGVPEGFKLSQNYPNPFNPTTNIEFSLNESGATSLKVYDLTGREVASLVDSRLSAGEHSVSFDASNLSSGVYVYILQSNGIRLANKMTLI 819
            YD N    E  V     FSR ++VS DGNTIWW GYT GS+L Y++PDEFS F   PDT+++G  SE      +   L+  +GS ND P        G  Y P T+Y  D     + D G   + E P+                N RPRG+ FS DG T Y  VF      V +Q  T     +    ED   +  G+ L+QN+PNPFNPTT I + L +SG T+L+VYD+ GR VA+LV+  + AG H+V+FDASNL SGVY+Y L S  +RL NKMTL+
Sbjct:  172 YDENFNFIENAVDSARGFSRTLEVSPDGNTIWWPGYTTGSILAYSRPDEFSRFDQVPDTLVKGFASESMVYDRINNLLYSATGSGNDAPNFFNGEETGTDYAPNTYYGIDPATGEIVDGGFMYETEDPV----------------NYRPRGIAFSPDGLTVYHGVFRASGEPVGMQHATRPNTELVVSVEDQVDLASGYTLNQNFPNPFNPTTAITYELAQSGMTTLRVYDMLGRVVATLVNDTMPAGYHTVNFDASNLGSGVYIYELVSGNVRLTNKMTLV 437          
BLAST of mRNA_M-pyrifera_M_contig88090.20462.1 vs. uniprot
Match: A0A7V2ZL09_9BACT (T9SS type A sorting domain-containing protein n=1 Tax=Ignavibacterium album TaxID=591197 RepID=A0A7V2ZL09_9BACT)

HSP 1 Score: 206 bits (524), Expect = 2.450e-60
Identity = 122/263 (46.39%), Postives = 156/263 (59.32%), Query Frame = 1
Query:   52 VTLTGSFSRDMQVSADGNTIWWAGYTLGSVLKYTKPDEFSGFSATPDTVLRGIRSEVFDIHPVTGYLWVGSGSLNDVPG------APYQPQTWYAFDVADIGTDNEAPIDSINWVAGADIAAGFDNARPRGLDFSADGKTAYISVFSGVDTDVDVQKFTTEQVFVSNEEEDISG--VPEGFKLSQNYPNPFNPTTNIEFSLNESGATSLKVYDLTGREVASLVDSRLSAGEHSVSFDASNLSSGVYVYILQSNGIRLANKMTL 816
            V  T  FSR  +VS DGNTI+WAGYT   VL Y +P EF  F+   DT+ +G  SE F   P   YLW  SGS ND+P         +   TWYA D+     +    +DSI W           N RPRG+ FS D + AY++ F G      VQKF    V V     D +G  V +G+KLSQNYPNPFNPTT+I F L ++G T+LKVYD+ G EVA+L+D  ++AG+HSV F+A NL+SG Y+Y L  NG+R++NKM L
Sbjct:  185 VDTTVGFSRSFEVSPDGNTIYWAGYTNHCVLVYNRPSEFDPFTVV-DTIFKGFDSESFAWSPNKQYLWASSGSYNDLPNRYPGEVTYWDVATWYARDM-----NTGQIVDSIKWQFNVPANP---NERPRGIAFSPDYRYAYVTCF-GASNYPAVQKFRNPNVSV-----DDNGLTVIDGYKLSQNYPNPFNPTTSINFELPKNGYTTLKVYDMLGNEVATLIDKEMTAGQHSVKFNAQNLASGTYLYQLNVNGVRISNKMIL 432          
BLAST of mRNA_M-pyrifera_M_contig88090.20462.1 vs. uniprot
Match: A0A2E9UEY7_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Balneola sp. TaxID=2024824 RepID=A0A2E9UEY7_9BACT)

HSP 1 Score: 204 bits (519), Expect = 2.590e-60
Identity = 94/159 (59.12%), Postives = 125/159 (78.62%), Query Frame = 1
Query:    7 PIYKYDSNLENEEVLVTLTGSFSRDMQVSADGNTIWWAGYTLGSVLKYTKPDEFSGFSATPDTVLRGIRSEVFDIHPVTGYLWVGSGSLNDVPGAPYQPQTWYAFDVADIGTDNEAPIDSINWVAGADIAAG---FDNARPRGLDFSADGKTAYISVFS 474
            P+ K+ ++L  EE LVT+ GS+SRD+QVSADGNTIWWAGYT  ++ ++++ DEFS F    DTVL G++SE FDIHPVTG++WVG+GS+NDVP AP+ PQTWY+FD + +GTDNE P+DS++W    +I  G   FD+ARPRG+DFSADG TAY+  F+
Sbjct:  203 PLVKFGADLTGEETLVTIPGSYSRDLQVSADGNTIWWAGYTNAAIHRFSRDDEFSSFGDA-DTVLVGMKSESFDIHPVTGHIWVGAGSMNDVPAAPWTPQTWYSFDTSTLGTDNETPLDSLHW----EILEGDGPFDDARPRGMDFSADGMTAYVVSFA 356          
BLAST of mRNA_M-pyrifera_M_contig88090.20462.1 vs. uniprot
Match: A0A6N7BB56_9BACT (Por_Secre_tail domain-containing protein (Fragment) n=1 Tax=Ignavibacteria bacterium TaxID=2053306 RepID=A0A6N7BB56_9BACT)

HSP 1 Score: 201 bits (512), Expect = 8.920e-59
Identity = 117/254 (46.06%), Postives = 152/254 (59.84%), Query Frame = 1
Query:    4 SPIYKYDSNLENEEVLVTLTGSFSRDMQVSADGNTIWWAGYTLGSVLKYTKPDEFSGFSATPDTVLRGIRSEVFDIHPVTGYLWVGSGSLNDVPGAPYQPQTWYAFDVADIGTDNEAPIDSINWVAGADIAAGFDNARPRGLDFSADGKTAYISVFSGVDTDVDVQKFTTEQVFVSNEEEDISGVPEGFKLSQNYPNPFNPTTNIEFSLNESGATSLKVYDLTGREVASLVDSRLSAGEHSVSFDASNLSSGVY 765
            SP+  YD N       +  T  FSR  +VSADGNTI+WAGYT   +  Y + DEFS F A  D++  G   E F  HP T  LW+ +GS ND P APY   TWYA+D +      +  +DS+ W   AD+A    + RPR L FS DGK AYI  F    +D+ +QK     V   ++ + +  +P  + LSQNYPNPFNPTTNI+FS+   G  SLKVYD+ G+EV +L+D+   AG + VSFDAS LSSG+Y
Sbjct:  174 SPMEMYDQNFTLLGNALATTVGFSRSFEVSADGNTIYWAGYTNHKIFIYNRADEFSSF-ARKDSLFEGFDCESFTWHPTTKNLWMSAGSNNDKPKAPYTMGTWYAYDFS-----KKKIVDSLKWKY-ADVAK--PDERPRALAFSPDGKIAYIGSFGTATSDL-LQKL----VLGGSDVKKLEEIPTQYDLSQNYPNPFNPTTNIKFSIPVEGMVSLKVYDVVGQEVETLLDTYKGAGTYEVSFDASKLSSGIY 413          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig88090.20462.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3D1G9K3_9BACT2.130e-13369.34Por_Secre_tail domain-containing protein n=1 Tax=B... [more]
A0A1B6YDY5_9BACT2.410e-12967.39Por_Secre_tail domain-containing protein n=6 Tax=u... [more]
A0A2E6N3Z4_9BACT2.410e-10356.79Por_Secre_tail domain-containing protein n=1 Tax=B... [more]
UPI00037846B53.230e-9753.79T9SS type A sorting domain-containing protein n=1 ... [more]
A0A7V3FWU9_9BACT1.060e-6547.43T9SS type A sorting domain-containing protein n=1 ... [more]
A0A1V5TEN1_9BACT1.330e-6144.81Por_Secre_tail domain-containing protein n=2 Tax=u... [more]
A0A0P7X3B6_9BACT2.460e-6142.91Extracellular protein n=1 Tax=Bacteroidetes bacter... [more]
A0A7V2ZL09_9BACT2.450e-6046.39T9SS type A sorting domain-containing protein n=1 ... [more]
A0A2E9UEY7_9BACT2.590e-6059.12Uncharacterized protein (Fragment) n=1 Tax=Balneol... [more]
A0A6N7BB56_9BACT8.920e-5946.06Por_Secre_tail domain-containing protein (Fragment... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig88090contigM-pyrifera_M_contig88090:6..824 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score306.2
Seed ortholog evalue1.5e-80
Seed eggNOG ortholog1121930.AQXG01000002_gene2151
Hectar predicted targeting categoryother localisation
EggNOG free text desc.amine dehydrogenase activity
EggNOG OGsCOG3391@1,COG3391@2
COG Functional cat.CO
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size819
Cds size819
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816790.5061917-CDS-M-pyrifera_M_contig88090:5..8241622816790.5061917-CDS-M-pyrifera_M_contig88090:5..824Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88090 6..824 +
1692278180.0901587-CDS-M-pyrifera_M_contig88090:5..8241692278180.0901587-CDS-M-pyrifera_M_contig88090:5..824Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88090 6..824 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig88090.20462.1prot_M-pyrifera_M_contig88090.20462.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig88090 6..824 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig88090.20462.1

>prot_M-pyrifera_M_contig88090.20462.1 ID=prot_M-pyrifera_M_contig88090.20462.1|Name=mRNA_M-pyrifera_M_contig88090.20462.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=273bp
DSPIYKYDSNLENEEVLVTLTGSFSRDMQVSADGNTIWWAGYTLGSVLKY
TKPDEFSGFSATPDTVLRGIRSEVFDIHPVTGYLWVGSGSLNDVPGAPYQ
PQTWYAFDVADIGTDNEAPIDSINWVAGADIAAGFDNARPRGLDFSADGK
TAYISVFSGVDTDVDVQKFTTEQVFVSNEEEDISGVPEGFKLSQNYPNPF
NPTTNIEFSLNESGATSLKVYDLTGREVASLVDSRLSAGEHSVSFDASNL
SSGVYVYILQSNGIRLANKMTLI
back to top

mRNA from alignment at M-pyrifera_M_contig88090:6..824+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig88090.20462.1 ID=mRNA_M-pyrifera_M_contig88090.20462.1|Name=mRNA_M-pyrifera_M_contig88090.20462.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=819bp|location=Sequence derived from alignment at M-pyrifera_M_contig88090:6..824+ (Macrocystis pyrifera P11B4 male)
GACTCTCCTATTTATAAGTATGATAGCAATCTTGAAAATGAAGAAGTATT AGTAACACTTACTGGTAGTTTCTCTAGAGATATGCAAGTTTCTGCTGATG GGAATACTATTTGGTGGGCTGGTTATACATTAGGTTCTGTATTAAAATAT ACTAAACCAGATGAATTTAGTGGTTTCAGTGCTACTCCAGATACTGTACT TAGAGGTATTAGATCAGAAGTGTTTGATATACATCCAGTTACTGGCTATT TATGGGTAGGTTCAGGTTCATTAAACGATGTACCTGGTGCACCTTACCAA CCTCAAACTTGGTATGCATTTGATGTAGCTGATATTGGAACAGATAACGA AGCTCCAATCGATAGTATTAATTGGGTTGCAGGAGCAGACATTGCTGCTG GCTTTGATAATGCACGTCCTCGTGGTCTTGATTTTTCAGCTGATGGTAAA ACTGCTTATATAAGTGTATTTAGCGGTGTTGATACTGATGTTGATGTTCA GAAGTTTACTACTGAGCAAGTATTCGTTTCAAATGAAGAAGAAGACATTA GTGGAGTTCCAGAAGGTTTCAAATTAAGTCAAAATTACCCGAATCCATTT AACCCAACTACTAATATTGAATTCTCACTTAATGAGTCTGGCGCTACTTC TTTGAAGGTGTATGACTTAACAGGTAGAGAAGTTGCTTCTTTGGTAGATT CTAGACTTAGTGCTGGTGAGCATTCAGTTTCTTTTGATGCTTCAAATCTG TCTTCAGGAGTATATGTTTATATACTTCAATCGAACGGCATCCGTTTAGC AAACAAAATGACACTGATT
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig88090:6..824+

>mRNA_M-pyrifera_M_contig88090.20462.1 ID=mRNA_M-pyrifera_M_contig88090.20462.1|Name=mRNA_M-pyrifera_M_contig88090.20462.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1638bp|location=Sequence derived from alignment at M-pyrifera_M_contig88090:6..824+ (Macrocystis pyrifera P11B4 male)
GACTCTCCTATTTATAAGTATGATAGCAATCTTGAAAATGAAGAAGTATT
AGTAACACTTACTGGTAGTTTCTCTAGAGATATGCAAGTTTCTGCTGATG
GGAATACTATTTGGTGGGCTGGTTATACATTAGGTTCTGTATTAAAATAT
ACTAAACCAGATGAATTTAGTGGTTTCAGTGCTACTCCAGATACTGTACT
TAGAGGTATTAGATCAGAAGTGTTTGATATACATCCAGTTACTGGCTATT
TATGGGTAGGTTCAGGTTCATTAAACGATGTACCTGGTGCACCTTACCAA
CCTCAAACTTGGTATGCATTTGATGTAGCTGATATTGGAACAGATAACGA
AGCTCCAATCGATAGTATTAATTGGGTTGCAGGAGCAGACATTGCTGCTG
GCTTTGATAATGCACGTCCTCGTGGTCTTGATTTTTCAGCTGATGGTAAA
ACTGCTTATATAAGTGTATTTAGCGGTGTTGATACTGATGTTGATGTTCA
GAAGTTTACTACTGAGCAAGTATTCGTTTCAAATGAAGAAGAAGACATTA
GTGGAGTTCCAGAAGGTTTCAAATTAAGTCAAAATTACCCGAATCCATTT
AACCCAACTACTAATATTGAATTCTCACTTAATGAGTCTGGCGCTACTTC
TTTGAAGGTGTATGACTTAACAGGTAGAGAAGTTGCTTCTTTGGTAGATT
CTAGACTTAGTGCTGGTGAGCATTCAGTTTCTTTTGATGCTTCAAATCTG
TCTTCAGGAGTATATGTTTATATACTTCAATCGAACGGCATCCGTTTAGC
AAACAAAATGACACTGATTGACTCTCCTATTTATAAGTATGATAGCAATC
TTGAAAATGAAGAAGTATTAGTAACACTTACTGGTAGTTTCTCTAGAGAT
ATGCAAGTTTCTGCTGATGGGAATACTATTTGGTGGGCTGGTTATACATT
AGGTTCTGTATTAAAATATACTAAACCAGATGAATTTAGTGGTTTCAGTG
CTACTCCAGATACTGTACTTAGAGGTATTAGATCAGAAGTGTTTGATATA
CATCCAGTTACTGGCTATTTATGGGTAGGTTCAGGTTCATTAAACGATGT
ACCTGGTGCACCTTACCAACCTCAAACTTGGTATGCATTTGATGTAGCTG
ATATTGGAACAGATAACGAAGCTCCAATCGATAGTATTAATTGGGTTGCA
GGAGCAGACATTGCTGCTGGCTTTGATAATGCACGTCCTCGTGGTCTTGA
TTTTTCAGCTGATGGTAAAACTGCTTATATAAGTGTATTTAGCGGTGTTG
ATACTGATGTTGATGTTCAGAAGTTTACTACTGAGCAAGTATTCGTTTCA
AATGAAGAAGAAGACATTAGTGGAGTTCCAGAAGGTTTCAAATTAAGTCA
AAATTACCCGAATCCATTTAACCCAACTACTAATATTGAATTCTCACTTA
ATGAGTCTGGCGCTACTTCTTTGAAGGTGTATGACTTAACAGGTAGAGAA
GTTGCTTCTTTGGTAGATTCTAGACTTAGTGCTGGTGAGCATTCAGTTTC
TTTTGATGCTTCAAATCTGTCTTCAGGAGTATATGTTTATATACTTCAAT
CGAACGGCATCCGTTTAGCAAACAAAATGACACTGATT
back to top