mRNA_M-pyrifera_M_contig87876.20417.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_M-pyrifera_M_contig87876.20417.1
Unique Name	mRNA_M-pyrifera_M_contig87876.20417.1
Type	mRNA
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))

Homology

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BLAST of mRNA_M-pyrifera_M_contig87876.20417.1 vs. uniprot
Match: A0A7S1CQ43_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CQ43_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 9.780e-19
Identity = 39/103 (37.86%), Postives = 68/103 (66.02%), Query Frame = 1

Query:    4 LAPQSVVAPAGAFTLVSNVFFAYFLLGESVGRKEIGATALVVSGAMISVAFGSRTSRSYTLQQLVALWQTPLMIGYAIAASSFGILMVLVINRAEALLKESVE 312
            LAPQS+V P G+FTLV+NV FA+F LGE++ ++++G TAL+++GA ++VAFG  +   ++L +L+AL+  P ++ Y +   +       ++   E +L +  E
Sbjct:   28 LAPQSIVTPMGSFTLVTNVIFAHFWLGEALAKRDLGGTALILTGATVAVAFGDHSETCWSLDELIALYAAPGVVAYIVVVLAMLAFFYYIVKTCEKMLNDRPE 130

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BLAST of mRNA_M-pyrifera_M_contig87876.20417.1 vs. uniprot
Match: A0A5A8C1N8_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8C1N8_CAFRO)

HSP 1 Score: 85.9 bits (211), Expect = 3.000e-17
Identity = 46/101 (45.54%), Postives = 67/101 (66.34%), Query Frame = 1

Query:    4 LAPQSVVAPAGAFTLVSNVFFAYFLLGESVGRKEIGATALVVSGAMISVAFGSRTSRSYTLQQLVALWQTPLMIGYAIAASSFGILMVLVINRAEALLKES 306
            LAPQS+VAP G+FTLVSNV FA+F L E +  +++  T LV++GA+ISV+FGS    +Y++ +L AL+  P M  Y +        +V++I RAE  L+ S
Sbjct:   77 LAPQSLVAPTGSFTLVSNVIFAHFWLREKLTARDLIGTGLVIAGAVISVSFGSHEETAYSIDELQALYVQPSMAVYGVFMILLWTGLVVLIRRAENTLRGS 177

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BLAST of mRNA_M-pyrifera_M_contig87876.20417.1 vs. uniprot
Match: A0A5A8DI96_CAFRO (SSD domain-containing protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DI96_CAFRO)

HSP 1 Score: 85.9 bits (211), Expect = 3.090e-17
Identity = 46/101 (45.54%), Postives = 67/101 (66.34%), Query Frame = 1

Query:    4 LAPQSVVAPAGAFTLVSNVFFAYFLLGESVGRKEIGATALVVSGAMISVAFGSRTSRSYTLQQLVALWQTPLMIGYAIAASSFGILMVLVINRAEALLKES 306
            LAPQS+VAP G+FTLVSNV FA+F L E +  +++  T LV++GA+ISV+FGS    +Y++ +L AL+  P M  Y +        +V++I RAE  L+ S
Sbjct:   77 LAPQSLVAPTGSFTLVSNVIFAHFWLREKLTARDLIGTGLVIAGAVISVSFGSHEETAYSIDELQALYVQPSMAVYGVFMILLWTGLVVLIRRAENTLRGS 177

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BLAST of mRNA_M-pyrifera_M_contig87876.20417.1 vs. uniprot
Match: A0A485LE91_9STRA (Aste57867_20124 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LE91_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 9.480e-17
Identity = 43/110 (39.09%), Postives = 71/110 (64.55%), Query Frame = 1

Query:    7 APQSVVAPAGAFTLVSNVFFAYFLLGESVGRKEIGATALVVSGAMISVAFGSRTSRSYTLQQLVALWQTPLMIGYAIAASSFGILMVLVINRAEALLKE--SVEDQFKEY 330
            A QS++AP GAFTLV+N+FFA++ L E +GR ++  T L+  GA+    FGS +S SY+L +L+AL+    M+ Y +  +S   L+  ++ R+E  LK   ++ +++K Y
Sbjct:   41 AAQSIIAPVGAFTLVANIFFAHYWLRERLGRNDLFGTILICIGAVTVTIFGSHSSTSYSLSELLALYYRWDMLVYVVVIASILFLLYTMMTRSEEALKTHGNLSNEYKTY 150

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BLAST of mRNA_M-pyrifera_M_contig87876.20417.1 vs. uniprot
Match: W4GQP7_9STRA (Uncharacterized protein n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GQP7_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 1.320e-15
Identity = 44/110 (40.00%), Postives = 71/110 (64.55%), Query Frame = 1

Query:    7 APQSVVAPAGAFTLVSNVFFAYFLLGESVGRKEIGATALVVSGAMISVAFGSRTSRSYTLQQLVALWQTPLMIGYAIAASSFGILMVLVINRAEALLKE--SVEDQFKEY 330
            A QSV+AP GAFTLV+N+FFA++ L E +GR ++  T L+  GA++   FGS +S S+TL +L+AL+    M+ YA A  +  I +   + R+E  L+   ++ D++K +
Sbjct:   78 AAQSVIAPVGAFTLVANIFFAHYWLRERLGRNDLIGTMLICIGAIMVTVFGSHSSTSHTLDELLALYYRWDMLVYACAVCAVLIGLFTALVRSEDALRVHGNLSDEYKTF 187

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BLAST of mRNA_M-pyrifera_M_contig87876.20417.1 vs. uniprot
Match: A0A6G0WWG4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WWG4_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 1.690e-15
Identity = 43/110 (39.09%), Postives = 71/110 (64.55%), Query Frame = 1

Query:    7 APQSVVAPAGAFTLVSNVFFAYFLLGESVGRKEIGATALVVSGAMISVAFGSRTSRSYTLQQLVALWQTPLMIGYAIAASSFGILMVLVINRAEALLKE--SVEDQFKEY 330
            A QS++AP GAFTLV+N+FFA++ L E +GR ++  T L+  GA++   FGS +S SY+L +L+AL+    M+ Y  A  +   L+  ++ R+E  LK   ++ D++K +
Sbjct:   77 AAQSIIAPVGAFTLVANIFFAHYWLRERLGRNDLFGTILICIGAVMVTIFGSHSSTSYSLDELLALYYRWDMLIYVAAICAILSLLYTMLCRSEEALKNHGNMSDEYKPF 186

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BLAST of mRNA_M-pyrifera_M_contig87876.20417.1 vs. uniprot
Match: A0A425D6K9_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A425D6K9_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 2.110e-15
Identity = 44/110 (40.00%), Postives = 71/110 (64.55%), Query Frame = 1

Query:    7 APQSVVAPAGAFTLVSNVFFAYFLLGESVGRKEIGATALVVSGAMISVAFGSRTSRSYTLQQLVALWQTPLMIGYAIAASSFGILMVLVINRAEALLKE--SVEDQFKEY 330
            A QSV+AP GAFTLV+N+FFA++ L E +GR ++  T L+  GA++   FGS +S S+TL +L+AL+    M+ YA A  +  I +   + R+E  L+   ++ D++K +
Sbjct:   81 AAQSVIAPVGAFTLVANIFFAHYWLRERLGRNDLIGTMLICIGAIMVTVFGSHSSTSHTLDELLALYYRWDMLVYACAVCAVLIGLFTALVRSEDALRVHGNLSDEYKTF 190

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BLAST of mRNA_M-pyrifera_M_contig87876.20417.1 vs. uniprot
Match: W4GR25_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GR25_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 3.160e-15
Identity = 44/110 (40.00%), Postives = 71/110 (64.55%), Query Frame = 1

Query:    7 APQSVVAPAGAFTLVSNVFFAYFLLGESVGRKEIGATALVVSGAMISVAFGSRTSRSYTLQQLVALWQTPLMIGYAIAASSFGILMVLVINRAEALLKE--SVEDQFKEY 330
            A QSV+AP GAFTLV+N+FFA++ L E +GR ++  T L+  GA++   FGS +S S+TL +L+AL+    M+ YA A  +  I +   + R+E  L+   ++ D++K +
Sbjct:   78 AAQSVIAPVGAFTLVANIFFAHYWLRERLGRNDLIGTMLICIGAIMVTVFGSHSSTSHTLDELLALYYRWDMLVYACAVCAVLIGLFTALVRSEDALRVHGNLSDEYKTF 187

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BLAST of mRNA_M-pyrifera_M_contig87876.20417.1 vs. uniprot
Match: A0A6A4ZHH9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZHH9_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 6.540e-15
Identity = 44/110 (40.00%), Postives = 70/110 (63.64%), Query Frame = 1

Query:    7 APQSVVAPAGAFTLVSNVFFAYFLLGESVGRKEIGATALVVSGAMISVAFGSRTSRSYTLQQLVALWQTPLMIGYAIAASSFGILMVLVINRAEALLKE--SVEDQFKEY 330
            A QSV+AP GAFTLV+N+FFA++ L E +GR ++  T L+  GA++   FGS +S S+TL +L+AL+    M  YA A  +  I +   + R+E  L+   ++ D++K +
Sbjct:   84 AAQSVIAPVGAFTLVANIFFAHYWLRERLGRNDLIGTMLICIGAIMVTVFGSHSSTSHTLDELLALYYRWDMFVYACAVCAVLIGLFTALVRSEDALRVHGNLSDEYKTF 193

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BLAST of mRNA_M-pyrifera_M_contig87876.20417.1 vs. uniprot
Match: A0A0G4ITT2_PLABS (Uncharacterized protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4ITT2_PLABS)

HSP 1 Score: 78.6 bits (192), Expect = 9.190e-15
Identity = 44/111 (39.64%), Postives = 68/111 (61.26%), Query Frame = 1

Query:    1 GLAPQSVVAPAGAFTLVSNVFFAYFLLGESVGRKEIGATALVVSGAMISVAFGSRTSRSYTLQQLVALWQTPLMIGYAIAASSFGILMVLVINRAEALLKESVEDQFKEYE 333
            GLA QS+VAP G  TLVSN  FA   L E   RK++  TAL+++G+ I+V+FG  TS++Y+L  L+A ++  +   YA A     +L   +I R    L+E++ ++ +E E
Sbjct:   84 GLAAQSIVAPIGCVTLVSNFLFASMFLDERPRRKDLYGTALILTGSTIAVSFGDHTSQTYSLADLLAFYEGTIFQIYA-ALLGATMLAAFIITRRSVQLREAMAEKIEELE 193

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig87876.20417.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig87876.20417.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A7S1CQ43_9STRA	9.780e-19	37.86	Hypothetical protein (Fragment) n=1 Tax=Bicosoecid...	[more]
A0A5A8C1N8_CAFRO	3.000e-17	45.54	Uncharacterized protein n=2 Tax=Cafeteria roenberg...	[more]
A0A5A8DI96_CAFRO	3.090e-17	45.54	SSD domain-containing protein n=2 Tax=Cafeteria ro...	[more]
A0A485LE91_9STRA	9.480e-17	39.09	Aste57867_20124 protein n=1 Tax=Aphanomyces stella...	[more]
W4GQP7_9STRA	1.320e-15	40.00	Uncharacterized protein n=5 Tax=Aphanomyces astaci...	[more]
A0A6G0WWG4_9STRA	1.690e-15	39.09	Uncharacterized protein n=1 Tax=Aphanomyces euteic...	[more]
A0A425D6K9_9STRA	2.110e-15	40.00	Uncharacterized protein n=2 Tax=Aphanomyces astaci...	[more]
W4GR25_9STRA	3.160e-15	40.00	Uncharacterized protein n=1 Tax=Aphanomyces astaci...	[more]
A0A6A4ZHH9_9STRA	6.540e-15	40.00	Uncharacterized protein n=1 Tax=Aphanomyces astaci...	[more]
A0A0G4ITT2_PLABS	9.190e-15	39.64	Uncharacterized protein n=1 Tax=Plasmodiophora bra...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig87876	contig	M-pyrifera_M_contig87876:493..825 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	72.8
Seed ortholog evalue	1.1e-10
Seed eggNOG ortholog	65071.PYU1_T004805
Hectar predicted targeting category	signal peptide
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005769,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0012505,GO:0015693,GO:0016020,GO:0030001,GO:0031410,GO:0031982,GO:0043226,GO:0043227,GO:0043229,GO:0044424,GO:0044444,GO:0044464,GO:0051179,GO:0051234,GO:0070838,GO:0071944,GO:0072511,GO:0097708
EggNOG free text desc.	Source PGD
EggNOG OGs	1MGCM@121069,KOG2922@1,KOG2922@2759
COG Functional cat.	U
Best tax level	Pythiales
Best eggNOG OG	NA\|NA\|NA
Exons	1
Model size	333
Cds size	333
Stop	0
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622816788.3345587-CDS-M-pyrifera_M_contig87876:492..825	1622816788.3345587-CDS-M-pyrifera_M_contig87876:492..825	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig87876 493..825 -
1692278178.9305985-CDS-M-pyrifera_M_contig87876:492..825	1692278178.9305985-CDS-M-pyrifera_M_contig87876:492..825	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig87876 493..825 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig87876.20417.1	prot_M-pyrifera_M_contig87876.20417.1	Macrocystis pyrifera P11B4 male	polypeptide	M-pyrifera_M_contig87876 493..825 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at M-pyrifera_M_contig87876:493..825-
coding sequence from alignment at M-pyrifera_M_contig87876:493..825-

protein sequence of mRNA_M-pyrifera_M_contig87876.20417.1

>prot_M-pyrifera_M_contig87876.20417.1 ID=prot_M-pyrifera_M_contig87876.20417.1|Name=mRNA_M-pyrifera_M_contig87876.20417.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=111bp
GLAPQSVVAPAGAFTLVSNVFFAYFLLGESVGRKEIGATALVVSGAMISV
AFGSRTSRSYTLQQLVALWQTPLMIGYAIAASSFGILMVLVINRAEALLK
ESVEDQFKEYE

mRNA from alignment at M-pyrifera_M_contig87876:493..825-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_M-pyrifera_M_contig87876.20417.1 ID=mRNA_M-pyrifera_M_contig87876.20417.1|Name=mRNA_M-pyrifera_M_contig87876.20417.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=333bp|location=Sequence derived from alignment at M-pyrifera_M_contig87876:493..825- (Macrocystis pyrifera P11B4 male)
GGACTGGCTCCTCAAAGCGTTGTTGCTCCTGCGGGTGCATTCACTCTAGT
GTCAAACGTGTTTTTTGCGTATTTCTTACTCGGAGAATCTGTAGGACGGA
AGGAGATTGGAGCAACGGCTCTCGTTGTGTCTGGAGCAATGATTTCCGTT
GCGTTTGGATCACGAACGAGTAGATCATACACGTTACAACAATTAGTTGC
ATTGTGGCAAACTCCATTGATGATTGGGTATGCCATTGCAGCATCTTCTT
TTGGCATTTTGATGGTATTGGTGATTAATCGTGCTGAAGCGCTGCTGAAA
GAATCTGTGGAAGATCAATTCAAAGAATACGAA

Coding sequence (CDS) from alignment at M-pyrifera_M_contig87876:493..825-

>mRNA_M-pyrifera_M_contig87876.20417.1 ID=mRNA_M-pyrifera_M_contig87876.20417.1|Name=mRNA_M-pyrifera_M_contig87876.20417.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=666bp|location=Sequence derived from alignment at M-pyrifera_M_contig87876:493..825- (Macrocystis pyrifera P11B4 male)
GGACTGGCTCCTCAAAGCGTTGTTGCTCCTGCGGGTGCATTCACTCTAGT
GTCAAACGTGTTTTTTGCGTATTTCTTACTCGGAGAATCTGTAGGACGGA
AGGAGATTGGAGCAACGGCTCTCGTTGTGTCTGGAGCAATGATTTCCGTT
GCGTTTGGATCACGAACGAGTAGATCATACACGTTACAACAATTAGTTGC
ATTGTGGCAAACTCCATTGATGATTGGGTATGCCATTGCAGCATCTTCTT
TTGGCATTTTGATGGTATTGGTGATTAATCGTGCTGAAGCGCTGCTGAAA
GAATCTGTGGAAGATCAATTCAAAGAATACGAAGGACTGGCTCCTCAAAG
CGTTGTTGCTCCTGCGGGTGCATTCACTCTAGTGTCAAACGTGTTTTTTG
CGTATTTCTTACTCGGAGAATCTGTAGGACGGAAGGAGATTGGAGCAACG
GCTCTCGTTGTGTCTGGAGCAATGATTTCCGTTGCGTTTGGATCACGAAC
GAGTAGATCATACACGTTACAACAATTAGTTGCATTGTGGCAAACTCCAT
TGATGATTGGGTATGCCATTGCAGCATCTTCTTTTGGCATTTTGATGGTA
TTGGTGATTAATCGTGCTGAAGCGCTGCTGAAAGAATCTGTGGAAGATCA
ATTCAAAGAATACGAA