mRNA_M-pyrifera_M_contig87788.20390.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig87788.20390.1
Unique NamemRNA_M-pyrifera_M_contig87788.20390.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig87788.20390.1 vs. uniprot
Match: A0A7Y2DQ94_9ACTN (Heme lyase CcmF/NrfE family subunit n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2DQ94_9ACTN)

HSP 1 Score: 394 bits (1013), Expect = 3.710e-131
Identity = 191/274 (69.71%), Postives = 224/274 (81.75%), Query Frame = 1
Query:    1 LTILGTFLARSGVVESVHAFSDGAVGPWLLVFFTIVALGSIILIGWRGDRLRSPGAIDSPLSREASFLANNVAFGALTFVVLLGTVFPLLAEAYDDSRLTIGRPYFDSLGRPIAFVLLFLMASAPVLPWRKASGELLADRLFWPVVAGVGAMVLAVILGGRGLYPMITFGLGGFAGGAALRQVVLATRRQGWRGFVGRTNGGMIVHLGVVLIAVGIASSEAYKTDRTATLAVGESVTVADHEFTYLGLGADTNERRNRVWADIEIDGEDIYAPA 822
            LTILGTFL RSGV++SVHAF+DG VGPWLL FF ++ LGS+ LIGWRGDRLRSPGAIDSPLSREA FLANNV FGA+ FVVLLGTVFPLLAEA D SRLTIGRPYFDSLGRPIA V LFLMA APVLPWRKAS ELL+ RLFWP V  VG    AV++G RG +P+ITF L GFAGG+ALR +VL+ RRQG  G +GR+NGGM+VHLGV+++A+G+A+SE+YKTDR  T+  G++V V +H FTY GL AD   RR+R +A + IDG  +Y PA
Sbjct:  266 LTILGTFLTRSGVIDSVHAFADGEVGPWLLTFFAVITLGSVGLIGWRGDRLRSPGAIDSPLSREAGFLANNVLFGAMAFVVLLGTVFPLLAEAIDGSRLTIGRPYFDSLGRPIAIVTLFLMAVAPVLPWRKASTELLSTRLFWPAVGAVGVTAFAVLVGARGFWPVITFALAGFAGGSALRHIVLSVRRQGVGGLIGRSNGGMVVHLGVIILAMGVAASESYKTDRIFTMEPGDTVFVEEHSFTYEGLAADRTSRRDRTYARVAIDGGQVYEPA 539          
BLAST of mRNA_M-pyrifera_M_contig87788.20390.1 vs. uniprot
Match: A0A524B510_9ACTN (Cytochrome C biogenesis protein CcmF n=1 Tax=Acidimicrobiales bacterium mtb01 TaxID=1967499 RepID=A0A524B510_9ACTN)

HSP 1 Score: 353 bits (905), Expect = 7.780e-115
Identity = 169/274 (61.68%), Postives = 212/274 (77.37%), Query Frame = 1
Query:    1 LTILGTFLARSGVVESVHAFSDGAVGPWLLVFFTIVALGSIILIGWRGDRLRSPGAIDSPLSREASFLANNVAFGALTFVVLLGTVFPLLAEAYDDSRLTIGRPYFDSLGRPIAFVLLFLMASAPVLPWRKASGELLADRLFWPVVAGVGAMVLAVILGGRGLYPMITFGLGGFAGGAALRQVVLATRRQGWRGFVGRTNGGMIVHLGVVLIAVGIASSEAYKTDRTATLAVGESVTVADHEFTYLGLGADTNERRNRVWADIEIDGEDIYAPA 822
            LTILGTFL RSGV+ SVHAFS+G VGPWLLVFF+I+ + +++LIGWRGDRLRSPG+IDSP+SRE +FLANNV F    FVVLLGTVFPL+ EA  D RL +G+P+FD + +PI   +LFLMA APVLPWRKASGE+L DRLFWP   GV A+V AVI+G  G  P++ F LGGFA G+ALRQV LATRRQGWRGFVGR NGGMIVHLGV++I+V +A+S AY   +   + VG++V  + H FT+ GL  +++  ++ + A + IDG  +Y PA
Sbjct:  292 LTILGTFLTRSGVINSVHAFSEGQVGPWLLVFFSIIVVVAVLLIGWRGDRLRSPGSIDSPISREGAFLANNVLFSLFAFVVLLGTVFPLVVEALQDRRLVVGQPFFDRMTKPIGLTMLFLMAIAPVLPWRKASGEILRDRLFWPACLGVAALVYAVIIGNDGWAPLLAFALGGFAAGSALRQVALATRRQGWRGFVGRANGGMIVHLGVIVISVALAASGAYTRSQEFVMEVGDTVEFSGHTFTFEGLVLESDPVKSSLKAQVRIDGGPVYEPA 565          
BLAST of mRNA_M-pyrifera_M_contig87788.20390.1 vs. uniprot
Match: A0A6I2YCD2_9ACTN (Heme lyase CcmF/NrfE family subunit n=2 Tax=root TaxID=1 RepID=A0A6I2YCD2_9ACTN)

HSP 1 Score: 345 bits (885), Expect = 1.040e-111
Identity = 169/273 (61.90%), Postives = 206/273 (75.46%), Query Frame = 1
Query:    1 LTILGTFLARSGVVESVHAFSDGAVGPWLLVFFTIVALGSIILIGWRGDRLRSPGAIDSPLSREASFLANNVAFGALTFVVLLGTVFPLLAEAYDDSRLTIGRPYFDSLGRPIAFVLLFLMASAPVLPWRKASGELLADRLFWPVVAGVGAMVLAVILGGRGLYPMITFGLGGFAGGAALRQVVLATRRQGWRGFVGRTNGGMIVHLGVVLIAVGIASSEAYKTDRTATLAVGESVTVADHEFTYLGLGADTNERRNRVWADIEIDGEDIYAP 819
            LTILGTFL RSGVV SVHAFS+  +GP LL FF ++   ++ LIGWRGD+LRSPG IDSPLSRE +FLANNV F A  FVVLLGTVFPL+ EA ++ R+++G PYF+ +  PI  VLLFLM+ APVLPWRKASGELL+ RLFWP   G+GAM LA++LG RGL PM+ F  GGFA GAALRQ+VLA+RRQGWRG VGRTNGGM+VHLGV+LIAV  ASS +Y   +   L VG++ TV  HE T+ G+       ++   A ++IDG  +YAP
Sbjct:  288 LTILGTFLTRSGVVASVHAFSNSTIGPLLLGFFAVIVAVTVGLIGWRGDQLRSPGRIDSPLSREGAFLANNVMFAAFAFVVLLGTVFPLIVEAINNDRISVGTPYFERMTMPIGLVLLFLMSIAPVLPWRKASGELLSQRLFWPAWCGLGAMTLALLLGARGLVPMLAFAFGGFAAGAALRQIVLASRRQGWRGIVGRTNGGMVVHLGVILIAVAFASSSSYAHQQELQLIVGQTGTVGGHEITFRGITTKELPEKSLTQAQLQIDGGQVYAP 560          
BLAST of mRNA_M-pyrifera_M_contig87788.20390.1 vs. uniprot
Match: A0A2D8LTN5_9ACTN (Cytochrome C biogenesis protein CcmF n=8 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2D8LTN5_9ACTN)

HSP 1 Score: 343 bits (880), Expect = 1.360e-111
Identity = 168/274 (61.31%), Postives = 200/274 (72.99%), Query Frame = 1
Query:    1 LTILGTFLARSGVVESVHAFSDGAVGPWLLVFFTIVALGSIILIGWRGDRLRSPGAIDSPLSREASFLANNVAFGALTFVVLLGTVFPLLAEAYDDSRLTIGRPYFDSLGRPIAFVLLFLMASAPVLPWRKASGELLADRLFWPVVAGVGAMVLAVILGGRGLYPMITFGLGGFAGGAALRQVVLATRRQGWRGFVGRTNGGMIVHLGVVLIAVGIASSEAYKTDRTATLAVGESVTVADHEFTYLGLGADTNERRNRVWADIEIDGEDIYAPA 822
            LTILGTF+ RSGV++SVHAF +  +GPW L FF ++ + S+ LI WRGD LR+PG IDSP+SRE +FLANNV F    FVVLLGT+FPL+ EA D   +++G PYFD +  PI F LLFLMA AP+LPWRKASG++L+DRL WP   GVG+MV A ++G RG  PM+ FGLGGFAGGAALRQVVLATRRQGWRG VGRTNGGMIVHLGVVLIAV  A+S AY      TL  G+S  ++ H  TY G        R    ADI +DG  +YAPA
Sbjct:  243 LTILGTFITRSGVLQSVHAFVESQIGPWFLTFFALIVIVSLGLIAWRGDELRAPGRIDSPVSREGAFLANNVVFAGFAFVVLLGTIFPLIVEAIDGRTISVGNPYFDQMTMPIGFTLLFLMAVAPILPWRKASGDVLSDRLIWPAWLGVGSMVSAAVVGARGWAPMLAFGLGGFAGGAALRQVVLATRRQGWRGLVGRTNGGMIVHLGVVLIAVAFAASNAYVRQGEFTLEPGDSAVISGHTLTYEGSRXVEYPNRVERKADIRVDGGQVYAPA 516          
BLAST of mRNA_M-pyrifera_M_contig87788.20390.1 vs. uniprot
Match: A0A6I2ZI89_9ACTN (Heme lyase CcmF/NrfE family subunit n=4 Tax=root TaxID=1 RepID=A0A6I2ZI89_9ACTN)

HSP 1 Score: 341 bits (875), Expect = 2.940e-110
Identity = 163/274 (59.49%), Postives = 208/274 (75.91%), Query Frame = 1
Query:    1 LTILGTFLARSGVVESVHAFSDGAVGPWLLVFFTIVALGSIILIGWRGDRLRSPGAIDSPLSREASFLANNVAFGALTFVVLLGTVFPLLAEAYDDSRLTIGRPYFDSLGRPIAFVLLFLMASAPVLPWRKASGELLADRLFWPVVAGVGAMVLAVILGGRGLYPMITFGLGGFAGGAALRQVVLATRRQGWRGFVGRTNGGMIVHLGVVLIAVGIASSEAYKTDRTATLAVGESVTVADHEFTYLGLGADTNERRNRVWADIEIDGEDIYAPA 822
            LTILGTFL RSGV+ SVHAFS G+VGPWLL FF ++ + +I+LIG RGD+LRSPGAIDSPLSRE +FLANNV F    FVVLLGTVFPL+ EA ++ R+ +G P+FD +  P+   LLFLMA APVLPWRKAS E+L DRLFWP   GVGA+ L+VI+G  G   +  F LGGFA GAALRQ+ LA+RRQGWRG VGR NGGM+VH+GV++IAV  ++S +Y   +   + +GE+VT ADH FT+ GL  ++++ +  V A + IDG+ +Y+PA
Sbjct:  292 LTILGTFLTRSGVINSVHAFSAGSVGPWLLAFFAVIVVVAIVLIGRRGDQLRSPGAIDSPLSREGAFLANNVIFSIFAFVVLLGTVFPLIVEALNNRRIVVGEPFFDRMTMPLGLTLLFLMAIAPVLPWRKASQEVLRDRLFWPAWCGVGALALSVIVGADGWASLAAFALGGFAAGAALRQIALASRRQGWRGVVGRANGGMVVHIGVIIIAVAFSASSSYTRTQEFVMKIGETVTFADHTFTFEGLSLESDDVKTSVKAAVRIDGDSVYSPA 565          
BLAST of mRNA_M-pyrifera_M_contig87788.20390.1 vs. uniprot
Match: A0A7K1EKY8_9ACTN (Heme lyase CcmF/NrfE family subunit n=4 Tax=root TaxID=1 RepID=A0A7K1EKY8_9ACTN)

HSP 1 Score: 337 bits (864), Expect = 1.180e-108
Identity = 162/274 (59.12%), Postives = 204/274 (74.45%), Query Frame = 1
Query:    1 LTILGTFLARSGVVESVHAFSDGAVGPWLLVFFTIVALGSIILIGWRGDRLRSPGAIDSPLSREASFLANNVAFGALTFVVLLGTVFPLLAEAYDDSRLTIGRPYFDSLGRPIAFVLLFLMASAPVLPWRKASGELLADRLFWPVVAGVGAMVLAVILGGRGLYPMITFGLGGFAGGAALRQVVLATRRQGWRGFVGRTNGGMIVHLGVVLIAVGIASSEAYKTDRTATLAVGESVTVADHEFTYLGLGADTNERRNRVWADIEIDGEDIYAPA 822
            LTILGTFL RSG++ SVHAFS+  +GP+LL FF ++ + S+ LIGWRGD+LRSPG IDSPLSRE +FLANNV F    FVVLLGTVFPL+ EA  D +L +G P+FD+L  PI   LLFLMA APVLPWRKASGELL+ RLFWP   G+  + L+++LG  GL P++TFGLGGFA GAALRQ+VLATRRQGWRG VGR NGGM+VH+GV+++AV +A+S ++   +  +L  G   + A H F  +G     ++R++ V A I IDG   YAPA
Sbjct:  293 LTILGTFLTRSGILNSVHAFSESDIGPFLLAFFAVIVIASVALIGWRGDQLRSPGTIDSPLSREGAFLANNVVFSVFAFVVLLGTVFPLIVEALQDRQLVVGEPFFDALSIPIGLTLLFLMAIAPVLPWRKASGELLSQRLFWPAWGGIAGLGLSILLGATGLNPLLTFGLGGFATGAALRQLVLATRRQGWRGLVGRANGGMVVHIGVIVLAVALAASNSFTRSQELSLEKGIPASFAGHTFELVGFTETDDDRKSSVSALISIDGGQAYAPA 566          
BLAST of mRNA_M-pyrifera_M_contig87788.20390.1 vs. uniprot
Match: A0A7K0XZL9_9ACTN (Heme lyase CcmF/NrfE family subunit n=5 Tax=root TaxID=1 RepID=A0A7K0XZL9_9ACTN)

HSP 1 Score: 337 bits (863), Expect = 1.580e-108
Identity = 164/274 (59.85%), Postives = 203/274 (74.09%), Query Frame = 1
Query:    1 LTILGTFLARSGVVESVHAFSDGAVGPWLLVFFTIVALGSIILIGWRGDRLRSPGAIDSPLSREASFLANNVAFGALTFVVLLGTVFPLLAEAYDDSRLTIGRPYFDSLGRPIAFVLLFLMASAPVLPWRKASGELLADRLFWPVVAGVGAMVLAVILGGRGLYPMITFGLGGFAGGAALRQVVLATRRQGWRGFVGRTNGGMIVHLGVVLIAVGIASSEAYKTDRTATLAVGESVTVADHEFTYLGLGADTNERRNRVWADIEIDGEDIYAPA 822
            LTILGTFL RSG++ SVHAFSD  +GP+LL FF I+ + S+ LIGWRGD+LR+PG IDSPLSRE +FLANNV F    F+VLLGTVFPL+ EA  D +L +G P+FD+L  P    LLFLM  APVLPWRKASGELL+ RLFWP  AG+ A+ L+V+LG  GL P++TF LGGFAGGAALRQ+VLATRRQG RG VGR NGGM+VH+GV+LIAV +A+S +Y   +   L  G   T   H F  +G    T++RR+ + A +++DG   YAPA
Sbjct:  293 LTILGTFLTRSGILNSVHAFSDSDIGPFLLTFFAIIVVVSVALIGWRGDKLRAPGTIDSPLSREGAFLANNVIFSVFAFIVLLGTVFPLIVEALQDRQLVVGEPFFDTLAVPAGLTLLFLMCIAPVLPWRKASGELLSQRLFWPAWAGIAALALSVVLGATGLKPLLTFTLGGFAGGAALRQLVLATRRQGMRGLVGRANGGMVVHIGVILIAVALAASNSYTHSQELLLKKGVVATFGGHTFELMGFEQSTDDRRSVMSAVVKVDGGKSYAPA 566          
BLAST of mRNA_M-pyrifera_M_contig87788.20390.1 vs. uniprot
Match: A0A6L6CAX3_9ACTN (Heme lyase CcmF/NrfE family subunit n=6 Tax=root TaxID=1 RepID=A0A6L6CAX3_9ACTN)

HSP 1 Score: 337 bits (863), Expect = 1.660e-108
Identity = 165/274 (60.22%), Postives = 199/274 (72.63%), Query Frame = 1
Query:    1 LTILGTFLARSGVVESVHAFSDGAVGPWLLVFFTIVALGSIILIGWRGDRLRSPGAIDSPLSREASFLANNVAFGALTFVVLLGTVFPLLAEAYDDSRLTIGRPYFDSLGRPIAFVLLFLMASAPVLPWRKASGELLADRLFWPVVAGVGAMVLAVILGGRGLYPMITFGLGGFAGGAALRQVVLATRRQGWRGFVGRTNGGMIVHLGVVLIAVGIASSEAYKTDRTATLAVGESVTVADHEFTYLGLGADTNERRNRVWADIEIDGEDIYAPA 822
            LTILGTFL RSG++ SVHAFSD  +GP+LL FF ++ + S+ LIGWRGD+LRSPG IDSPLSRE +FLANNV F    FVVLLGTVFPL+ EA  D +L +G P+FD L  P   VLLFLM  APVLPWRKASGELL  RLFWP  AG+ A+  +V+LG  G   ++TF LGGFAGGAALRQ+VLATRRQGWRGFVGR NGGM+VH+GV+LIAV +A+S +Y   +  +L  G       H F  +G    T++RR  + A + IDG   YAPA
Sbjct:  293 LTILGTFLTRSGILNSVHAFSDSDIGPFLLSFFALIVVVSVGLIGWRGDQLRSPGTIDSPLSREGAFLANNVVFSVFAFVVLLGTVFPLVVEALQDRQLVVGEPFFDKLAVPTGLVLLFLMCVAPVLPWRKASGELLQQRLFWPAWAGIAALAFSVVLGATGFASLLTFTLGGFAGGAALRQLVLATRRQGWRGFVGRANGGMVVHIGVILIAVALAASNSYTHSQELSLKKGVVANYGGHTFELIGFRETTDDRRTEIAALVSIDGGQAYAPA 566          
BLAST of mRNA_M-pyrifera_M_contig87788.20390.1 vs. uniprot
Match: UPI001E478F47 (heme lyase CcmF/NrfE family subunit n=1 Tax=Rhabdothermincola sp. EGI L10124 TaxID=2903142 RepID=UPI001E478F47)

HSP 1 Score: 337 bits (863), Expect = 4.410e-108
Identity = 165/274 (60.22%), Postives = 206/274 (75.18%), Query Frame = 1
Query:    1 LTILGTFLARSGVVESVHAFSDGAVGPWLLVFFTIVALGSIILIGWRGDRLRSPGAIDSPLSREASFLANNVAFGALTFVVLLGTVFPLLAEAYDDSRLTIGRPYFDSLGRPIAFVLLFLMASAPVLPWRKASGELLADRLFWPVVAGVGAMVLAVILGGRGLYPMITFGLGGFAGGAALRQVVLATRRQGWRGFVGRTNGGMIVHLGVVLIAVGIASSEAYKTDRTATLAVGESVTVADHEFTYLGLGADTNERRNRVWADIEIDGEDIYAPA 822
            LTILGTF+ RSGV++SVHAF++ A+GP +L FF ++ + S+ LIGWRGDRLR+PG IDSPLSRE +FLANNV F A  FVVLLGTVFPLL EA++D R+++G PYF+ +  PI   LLFLMA APVLPWRKASGELL  RL WP  AG  A+ +AV+ G RGL P++ FGLGGFA G+A+RQ+VLA RRQGWRGFVGR NGGM+VHLGV+++AV +A+S +Y      TLA GE+ + A HE TY+    D    +  V A I +DG   +APA
Sbjct:  288 LTILGTFITRSGVLDSVHAFTESAIGPAILAFFALIVIVSVGLIGWRGDRLRAPGRIDSPLSREGAFLANNVLFAAFAFVVLLGTVFPLLIEAFNDDRISVGVPYFNRMTTPIGLTLLFLMAVAPVLPWRKASGELLRHRLIWPAWAGAAALAVAVVAGARGLAPLLAFGLGGFAAGSAVRQLVLAGRRQGWRGFVGRANGGMVVHLGVIMVAVAVAASGSYVRQAEFTLAPGETASFAGHELTYVEQTIDELPEKTVVAAQILVDGTGPWAPA 561          
BLAST of mRNA_M-pyrifera_M_contig87788.20390.1 vs. uniprot
Match: A0A6I3HTQ0_9ACTN (Heme lyase CcmF/NrfE family subunit (Fragment) n=2 Tax=root TaxID=1 RepID=A0A6I3HTQ0_9ACTN)

HSP 1 Score: 328 bits (841), Expect = 1.190e-107
Identity = 164/274 (59.85%), Postives = 199/274 (72.63%), Query Frame = 1
Query:    1 LTILGTFLARSGVVESVHAFSDGAVGPWLLVFFTIVALGSIILIGWRGDRLRSPGAIDSPLSREASFLANNVAFGALTFVVLLGTVFPLLAEAYDDSRLTIGRPYFDSLGRPIAFVLLFLMASAPVLPWRKASGELLADRLFWPVVAGVGAMVLAVILGGRGLYPMITFGLGGFAGGAALRQVVLATRRQGWRGFVGRTNGGMIVHLGVVLIAVGIASSEAYKTDRTATLAVGESVTVADHEFTYLGLGADTNERRNRVWADIEIDGEDIYAPA 822
            LTILGTFL RSGV+ SVHAFSD  +GP+LL FF I+ + SI LIGWRG++L SPG IDSPLSRE +FLANNV F    FVVLLGTVFPL+ EA  + +L +G P+FD L  P+   LLFLM  APVLPWRKASGELLA RLFWP   G+GA+ L+V +G  GL P++TF LGGFAGGAALRQ+VLATRRQG RGF+GR NGGM+VH+GV+LIAV +A+S +Y   +   L      T   H F  LG   ++++RR  V A + +DG   Y PA
Sbjct:   94 LTILGTFLTRSGVLNSVHAFSDSNIGPFLLTFFAIIVVVSIALIGWRGEKLHSPGTIDSPLSREGAFLANNVIFSVFAFVVLLGTVFPLIIEALQNRQLVVGEPFFDKLAVPVGITLLFLMCIAPVLPWRKASGELLATRLFWPAWGGIGALALSVGVGATGLAPLLTFTLGGFAGGAALRQLVLATRRQGLRGFLGRANGGMVVHIGVILIAVALAASNSYTHSQELLLKQDVVATFDGHTFELLGFREESDDRRTVVAAVVRVDGGKSYTPA 367          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig87788.20390.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7Y2DQ94_9ACTN3.710e-13169.71Heme lyase CcmF/NrfE family subunit n=1 Tax=Acidim... [more]
A0A524B510_9ACTN7.780e-11561.68Cytochrome C biogenesis protein CcmF n=1 Tax=Acidi... [more]
A0A6I2YCD2_9ACTN1.040e-11161.90Heme lyase CcmF/NrfE family subunit n=2 Tax=root T... [more]
A0A2D8LTN5_9ACTN1.360e-11161.31Cytochrome C biogenesis protein CcmF n=8 Tax=Acidi... [more]
A0A6I2ZI89_9ACTN2.940e-11059.49Heme lyase CcmF/NrfE family subunit n=4 Tax=root T... [more]
A0A7K1EKY8_9ACTN1.180e-10859.12Heme lyase CcmF/NrfE family subunit n=4 Tax=root T... [more]
A0A7K0XZL9_9ACTN1.580e-10859.85Heme lyase CcmF/NrfE family subunit n=5 Tax=root T... [more]
A0A6L6CAX3_9ACTN1.660e-10860.22Heme lyase CcmF/NrfE family subunit n=6 Tax=root T... [more]
UPI001E478F474.410e-10860.22heme lyase CcmF/NrfE family subunit n=1 Tax=Rhabdo... [more]
A0A6I3HTQ0_9ACTN1.190e-10759.85Heme lyase CcmF/NrfE family subunit (Fragment) n=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig87788contigM-pyrifera_M_contig87788:3..824 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score331.3
Seed ortholog evalue4.4e-88
Seed eggNOG ortholog1313172.YM304_09640
Preferred nameccmF
KEGG rclassRC00176
KEGG koko:K02198,ko:K04016
KEGG TC9.B.14.1
KEGG ReactionR05712
Hectar predicted targeting categorysignal anchor
GOsGO:0003674,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016020,GO:0016021,GO:0016043,GO:0017003,GO:0017004,GO:0017006,GO:0018063,GO:0018193,GO:0018198,GO:0018378,GO:0019538,GO:0020037,GO:0022607,GO:0031224,GO:0031226,GO:0034622,GO:0036211,GO:0043170,GO:0043412,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044425,GO:0044459,GO:0044464,GO:0046906,GO:0048037,GO:0065003,GO:0071704,GO:0071840,GO:0071944,GO:0097159,GO:1901363,GO:1901564
EggNOG free text desc.Cytochrome c-type biogenesis protein CcmF C-terminal
EggNOG OGs2HZM9@201174,4CMX6@84992,COG1138@1,COG1138@2
COG Functional cat.O
Best tax levelAcidimicrobiia
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Exons1
Model size822
Cds size822
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816787.089365-CDS-M-pyrifera_M_contig87788:2..8241622816787.089365-CDS-M-pyrifera_M_contig87788:2..824Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87788 3..824 -
1692278178.2786322-CDS-M-pyrifera_M_contig87788:2..8241692278178.2786322-CDS-M-pyrifera_M_contig87788:2..824Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87788 3..824 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig87788.20390.1prot_M-pyrifera_M_contig87788.20390.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig87788 3..824 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig87788.20390.1

>prot_M-pyrifera_M_contig87788.20390.1 ID=prot_M-pyrifera_M_contig87788.20390.1|Name=mRNA_M-pyrifera_M_contig87788.20390.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=274bp
LTILGTFLARSGVVESVHAFSDGAVGPWLLVFFTIVALGSIILIGWRGDR
LRSPGAIDSPLSREASFLANNVAFGALTFVVLLGTVFPLLAEAYDDSRLT
IGRPYFDSLGRPIAFVLLFLMASAPVLPWRKASGELLADRLFWPVVAGVG
AMVLAVILGGRGLYPMITFGLGGFAGGAALRQVVLATRRQGWRGFVGRTN
GGMIVHLGVVLIAVGIASSEAYKTDRTATLAVGESVTVADHEFTYLGLGA
DTNERRNRVWADIEIDGEDIYAPA
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mRNA from alignment at M-pyrifera_M_contig87788:3..824-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig87788.20390.1 ID=mRNA_M-pyrifera_M_contig87788.20390.1|Name=mRNA_M-pyrifera_M_contig87788.20390.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=822bp|location=Sequence derived from alignment at M-pyrifera_M_contig87788:3..824- (Macrocystis pyrifera P11B4 male)
CTCACGATCCTCGGCACCTTCCTGGCCCGATCCGGCGTCGTCGAATCGGT GCACGCCTTCTCCGACGGTGCCGTCGGCCCGTGGCTGCTGGTGTTCTTCA CCATCGTCGCCCTCGGATCGATCATCCTCATCGGTTGGCGCGGTGATCGC CTGCGCTCACCCGGAGCCATCGACTCACCGCTGTCGCGCGAAGCCTCGTT CCTGGCCAACAACGTGGCCTTCGGGGCGCTCACCTTCGTGGTGCTCCTCG GCACGGTCTTCCCCCTGCTGGCCGAGGCATACGACGACAGCCGCCTCACG ATCGGTCGCCCCTACTTCGACTCGCTCGGCCGTCCGATCGCCTTCGTTCT CCTCTTCCTGATGGCCTCGGCCCCGGTGTTGCCATGGCGCAAGGCCTCGG GCGAACTGCTGGCCGACCGCCTGTTCTGGCCGGTCGTCGCCGGAGTCGGC GCGATGGTGCTCGCCGTCATCCTCGGCGGCCGTGGCCTCTATCCGATGAT CACGTTCGGCCTCGGTGGTTTCGCCGGCGGGGCAGCCCTTCGCCAGGTCG TGCTCGCCACTCGTCGCCAGGGTTGGCGTGGGTTCGTCGGCCGCACCAAC GGCGGCATGATCGTGCACCTCGGTGTGGTGCTCATCGCCGTCGGCATCGC CTCGAGCGAGGCCTACAAGACCGACCGCACCGCCACCCTCGCCGTCGGTG AATCGGTCACCGTGGCCGATCACGAGTTCACCTACCTCGGGCTCGGCGCC GACACCAACGAGCGTCGCAACCGGGTCTGGGCCGACATCGAGATCGACGG CGAAGACATCTACGCCCCGGCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig87788:3..824-

>mRNA_M-pyrifera_M_contig87788.20390.1 ID=mRNA_M-pyrifera_M_contig87788.20390.1|Name=mRNA_M-pyrifera_M_contig87788.20390.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1644bp|location=Sequence derived from alignment at M-pyrifera_M_contig87788:3..824- (Macrocystis pyrifera P11B4 male)
CTCACGATCCTCGGCACCTTCCTGGCCCGATCCGGCGTCGTCGAATCGGT
GCACGCCTTCTCCGACGGTGCCGTCGGCCCGTGGCTGCTGGTGTTCTTCA
CCATCGTCGCCCTCGGATCGATCATCCTCATCGGTTGGCGCGGTGATCGC
CTGCGCTCACCCGGAGCCATCGACTCACCGCTGTCGCGCGAAGCCTCGTT
CCTGGCCAACAACGTGGCCTTCGGGGCGCTCACCTTCGTGGTGCTCCTCG
GCACGGTCTTCCCCCTGCTGGCCGAGGCATACGACGACAGCCGCCTCACG
ATCGGTCGCCCCTACTTCGACTCGCTCGGCCGTCCGATCGCCTTCGTTCT
CCTCTTCCTGATGGCCTCGGCCCCGGTGTTGCCATGGCGCAAGGCCTCGG
GCGAACTGCTGGCCGACCGCCTGTTCTGGCCGGTCGTCGCCGGAGTCGGC
GCGATGGTGCTCGCCGTCATCCTCGGCGGCCGTGGCCTCTATCCGATGAT
CACGTTCGGCCTCGGTGGTTTCGCCGGCGGGGCAGCCCTTCGCCAGGTCG
TGCTCGCCACTCGTCGCCAGGGTTGGCGTGGGTTCGTCGGCCGCACCAAC
GGCGGCATGATCGTGCACCTCGGTGTGGTGCTCATCGCCGTCGGCATCGC
CTCGAGCGAGGCCTACAAGACCGACCGCACCGCCACCCTCGCCGTCGGTG
AATCGGTCACCGTGGCCGATCACGAGTTCACCTACCTCGGGCTCGGCGCC
GACACCAACGAGCGTCGCAACCGGGTCTGGGCCGACATCGAGATCGACGG
CGAAGACATCTACGCCCCGGCTCTCACGATCCTCGGCACCTTCCTGGCCC
GATCCGGCGTCGTCGAATCGGTGCACGCCTTCTCCGACGGTGCCGTCGGC
CCGTGGCTGCTGGTGTTCTTCACCATCGTCGCCCTCGGATCGATCATCCT
CATCGGTTGGCGCGGTGATCGCCTGCGCTCACCCGGAGCCATCGACTCAC
CGCTGTCGCGCGAAGCCTCGTTCCTGGCCAACAACGTGGCCTTCGGGGCG
CTCACCTTCGTGGTGCTCCTCGGCACGGTCTTCCCCCTGCTGGCCGAGGC
ATACGACGACAGCCGCCTCACGATCGGTCGCCCCTACTTCGACTCGCTCG
GCCGTCCGATCGCCTTCGTTCTCCTCTTCCTGATGGCCTCGGCCCCGGTG
TTGCCATGGCGCAAGGCCTCGGGCGAACTGCTGGCCGACCGCCTGTTCTG
GCCGGTCGTCGCCGGAGTCGGCGCGATGGTGCTCGCCGTCATCCTCGGCG
GCCGTGGCCTCTATCCGATGATCACGTTCGGCCTCGGTGGTTTCGCCGGC
GGGGCAGCCCTTCGCCAGGTCGTGCTCGCCACTCGTCGCCAGGGTTGGCG
TGGGTTCGTCGGCCGCACCAACGGCGGCATGATCGTGCACCTCGGTGTGG
TGCTCATCGCCGTCGGCATCGCCTCGAGCGAGGCCTACAAGACCGACCGC
ACCGCCACCCTCGCCGTCGGTGAATCGGTCACCGTGGCCGATCACGAGTT
CACCTACCTCGGGCTCGGCGCCGACACCAACGAGCGTCGCAACCGGGTCT
GGGCCGACATCGAGATCGACGGCGAAGACATCTACGCCCCGGCT
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