mRNA_M-pyrifera_M_contig87732.20383.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig87732.20383.1
Unique NamemRNA_M-pyrifera_M_contig87732.20383.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig87732.20383.1 vs. uniprot
Match: A0A7S1G5F9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G5F9_9STRA)

HSP 1 Score: 399 bits (1025), Expect = 2.790e-134
Identity = 192/271 (70.85%), Postives = 223/271 (82.29%), Query Frame = 1 
Query:    1 VRLAILDEVHLLHDERGAVLEALVARMHRQVEQSKSHLRIVGLSATLPNYEDVATFLRVNPARGLFFFDNSFRPCPLQLTYVGISEKRPLKRLEMMNQVCYEKVEAYAGKQQVIIFVHSRKDTVKTASVIRDMAVENDKLTAFLPEDSPSRGILVDEAATAKDDGLRDLLPFGFAVHHAGMHRDDRTLVEDLFADGHVQVLVSTATLAWGVNLPAHTVIIKGTQVYSPDKGEWVELSPLDVMQMLGRAGRPQYDTFGEGFLLTQHSELLYY 813
            VRL I+DE+HLLHD+RGAVLEALVAR  RQ+EQ++   RIVGLSATLPNYEDVATFLRV P +GLF+FDNSFRPCPLQ  Y+GI+EK+  +R  +MN++CYEKV  +AGK QVI+FVHSRK+T +TA  +RD A E D+   F+ ED  SR IL +E A  KD  L+DLLP GFA+HHAGM R DRTLVEDLFAD H+QVLVSTATLAWGVNLPAH VIIKGTQVY+P+ G W ELSPLDVMQMLGRAGRPQYD FGEG ++T H+EL YY
Sbjct:   54 VRLVIIDEIHLLHDDRGAVLEALVARTVRQIEQTQELTRIVGLSATLPNYEDVATFLRVKPDKGLFYFDNSFRPCPLQQQYIGITEKKAARRFALMNELCYEKVAEHAGKSQVIVFVHSRKETARTARALRDAAAERDEQGKFVKEDGASREILAEEQANCKDADLKDLLPHGFAIHHAGMPRADRTLVEDLFADRHIQVLVSTATLAWGVNLPAHAVIIKGTQVYNPELGRWAELSPLDVMQMLGRAGRPQYDEFGEGVIITSHAELQYY 324
[Close]
BLAST of mRNA_M-pyrifera_M_contig87732.20383.1 vs. uniprot
Match: A0A8H7ZRZ2_9FUNG (P-loop containing nucleoside triphosphate hydrolase protein (Fragment) n=1 Tax=Olpidium bornovanus TaxID=278681 RepID=A0A8H7ZRZ2_9FUNG)

HSP 1 Score: 387 bits (994), Expect = 5.250e-132
Identity = 185/271 (68.27%), Postives = 226/271 (83.39%), Query Frame = 1 
Query:    1 VRLAILDEVHLLHDERGAVLEALVARMHRQVEQSKSHLRIVGLSATLPNYEDVATFLRVNPARGLFFFDNSFRPCPLQLTYVGISEKRPLKRLEMMNQVCYEKVEAYAGKQQVIIFVHSRKDTVKTASVIRDMAVENDKLTAFLPEDSPSRGILVDEAATAKDDGLRDLLPFGFAVHHAGMHRDDRTLVEDLFADGHVQVLVSTATLAWGVNLPAHTVIIKGTQVYSPDKGEWVELSPLDVMQMLGRAGRPQYDTFGEGFLLTQHSELLYY 813
            VRL I+DE+HLLHD+RG VLE++V+R  R +E+++  +RIVGLSATLPNY DVATFLRV+P +GLF FD+S+RPCPL+  +VGI+EK+ +KR ++MN+VCY+KV   AGK QV++FVHSRK+  KTA  +RD A+E D +  FL  DS S+ IL  EA+T KD  L+DLLP+GFA HHAGM R DRTLVE+LFADGHVQVLVSTATLAWGVNLPAHTVIIKGTQ+YSP+KG WVELSP DV+QMLGRAGRPQ+DTFGEG ++T H EL YY
Sbjct:   18 VRLLIIDEIHLLHDDRGPVLESIVSRTIRNMEETQEAVRIVGLSATLPNYNDVATFLRVDPNKGLFHFDSSYRPCPLKQEFVGITEKKAIKRFQVMNEVCYKKVMDQAGKNQVLVFVHSRKEAAKTAKYLRDTAMEKDAMGQFLQGDSASQEILQTEASTCKDANLKDLLPYGFACHHAGMSRADRTLVEELFADGHVQVLVSTATLAWGVNLPAHTVIIKGTQMYSPEKGRWVELSPQDVLQMLGRAGRPQFDTFGEGIIITVHQELQYY 288
[Close]
BLAST of mRNA_M-pyrifera_M_contig87732.20383.1 vs. uniprot
Match: A0A5K0VK60_9MAGN (Uncharacterized protein (Fragment) n=4 Tax=Nymphaea colorata TaxID=210225 RepID=A0A5K0VK60_9MAGN)

HSP 1 Score: 397 bits (1020), Expect = 1.790e-128
Identity = 191/271 (70.48%), Postives = 228/271 (84.13%), Query Frame = 1 
Query:    1 VRLAILDEVHLLHDERGAVLEALVARMHRQVEQSKSHLRIVGLSATLPNYEDVATFLRVNPARGLFFFDNSFRPCPLQLTYVGISEKRPLKRLEMMNQVCYEKVEAYAGKQQVIIFVHSRKDTVKTASVIRDMAVENDKLTAFLPEDSPSRGILVDEAATAKDDGLRDLLPFGFAVHHAGMHRDDRTLVEDLFADGHVQVLVSTATLAWGVNLPAHTVIIKGTQVYSPDKGEWVELSPLDVMQMLGRAGRPQYDTFGEGFLLTQHSELLYY 813
            V+L I+DE+HLLHD RG VLE++VAR  RQVE +K  +R+VGLSATLPNYEDVA FLRV+P+ GLF FDNS+RPCPL   Y+GI+ K+PL+R ++MN++CYEKV   AGKQQV+IFVHSRK+T KTA  IRD A+ ND L  F+ EDS S+ IL  E+   K++ L+DLLP+GFA+HHAGM R DRTLVE+LFADGHV+VLVSTATLAWGVNLPAHTVIIKGTQVY+P+KG W ELSPLDVMQMLGRAGRPQYD++GEG +LT HSEL YY
Sbjct:  642 VKLLIIDEIHLLHDNRGPVLESIVARTVRQVETTKELIRLVGLSATLPNYEDVALFLRVDPSEGLFHFDNSYRPCPLAQQYIGITVKKPLQRFQLMNEICYEKVMGVAGKQQVLIFVHSRKETAKTARAIRDTALANDALGRFMNEDSASQEILRSESEKVKNNDLKDLLPYGFAIHHAGMARVDRTLVEELFADGHVRVLVSTATLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDVMQMLGRAGRPQYDSYGEGIILTGHSELQYY 912
[Close]
BLAST of mRNA_M-pyrifera_M_contig87732.20383.1 vs. uniprot
Match: A0A6J5XQT2_PRUAR (Uncharacterized protein n=1 Tax=Prunus armeniaca TaxID=36596 RepID=A0A6J5XQT2_PRUAR)

HSP 1 Score: 385 bits (989), Expect = 7.630e-128
Identity = 184/271 (67.90%), Postives = 220/271 (81.18%), Query Frame = 1 
Query:    1 VRLAILDEVHLLHDERGAVLEALVARMHRQVEQSKSHLRIVGLSATLPNYEDVATFLRVNPARGLFFFDNSFRPCPLQLTYVGISEKRPLKRLEMMNQVCYEKVEAYAGKQQVIIFVHSRKDTVKTASVIRDMAVENDKLTAFLPEDSPSRGILVDEAATAKDDGLRDLLPFGFAVHHAGMHRDDRTLVEDLFADGHVQVLVSTATLAWGVNLPAHTVIIKGTQVYSPDKGEWVELSPLDVMQMLGRAGRPQYDTFGEGFLLTQHSELLYY 813
            V+L I+DE+HLLHD RG VLE++VAR  RQ+E +K H+R+VGLSATLPNYEDVA FLRV+  RGLF+FDNS+RP PL   Y+GI  ++PL+R ++MN +CYEKV   AGK QV+IFVHSRK+T KTA  IRD A+  D L  FL EDS SR IL       K + L+DLLP+GFA+HHAG++R DR LVEDLFADGHVQVLVSTATLAWGVNLPAHTVIIKGTQ+Y P+KG W ELSPLDVMQMLGRAGRPQ+D++GEG ++T H+EL YY
Sbjct:  272 VKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKDHIRLVGLSATLPNYEDVALFLRVDLKRGLFYFDNSYRPVPLSQQYIGIMVRKPLQRFQLMNDLCYEKVMDVAGKHQVLIFVHSRKETAKTARAIRDTALAKDTLGRFLKEDSASREILTTHTDLVKSNDLKDLLPYGFAIHHAGLNRADRQLVEDLFADGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYDPEKGAWTELSPLDVMQMLGRAGRPQFDSYGEGIIITGHNELQYY 542
[Close]
BLAST of mRNA_M-pyrifera_M_contig87732.20383.1 vs. uniprot
Match: A0A392M7C7_9FABA (U5 small nuclear ribonucleoprotein 200 kDa helicase-like (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392M7C7_9FABA)

HSP 1 Score: 387 bits (993), Expect = 2.020e-127
Identity = 187/271 (69.00%), Postives = 219/271 (80.81%), Query Frame = 1 
Query:    1 VRLAILDEVHLLHDERGAVLEALVARMHRQVEQSKSHLRIVGLSATLPNYEDVATFLRVNPARGLFFFDNSFRPCPLQLTYVGISEKRPLKRLEMMNQVCYEKVEAYAGKQQVIIFVHSRKDTVKTASVIRDMAVENDKLTAFLPEDSPSRGILVDEAATAKDDGLRDLLPFGFAVHHAGMHRDDRTLVEDLFADGHVQVLVSTATLAWGVNLPAHTVIIKGTQVYSPDKGEWVELSPLDVMQMLGRAGRPQYDTFGEGFLLTQHSELLYY 813
            V+L I+DE+HLLHD RG VLE++VAR  RQ+E +K  +R+VGLSATLPNYEDVA FLRV+  +GLF+FDNS+RP PL   YVGI+ K+PL+R ++MN +CYEKV   AGK QV+IFVHSRK+T KTA  IRD A+ ND L  FL EDS SR IL       K   L+DLLP+GFA+HHAGM R DR LVEDLFADGH QVLVSTATLAWGVNLPAHTVIIKGTQ+Y+P+KG W ELSPLDVMQMLGRAGRPQYD++GEG ++T HSEL YY
Sbjct:  393 VKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKDFIRLVGLSATLPNYEDVALFLRVDLNKGLFYFDNSYRPVPLSQQYVGITVKKPLQRFQLMNDICYEKVMGVAGKHQVLIFVHSRKETAKTARAIRDAALANDTLGRFLKEDSASREILQTHTDLVKSSDLKDLLPYGFAIHHAGMTRTDRQLVEDLFADGHAQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDVMQMLGRAGRPQYDSYGEGIIVTGHSELQYY 663
[Close]
BLAST of mRNA_M-pyrifera_M_contig87732.20383.1 vs. uniprot
Match: A0A2K3NEK5_TRIPR (U5 small nuclear ribonucleoprotein 200 kDa helicase-like protein (Fragment) n=3 Tax=Trifolium TaxID=3898 RepID=A0A2K3NEK5_TRIPR)

HSP 1 Score: 392 bits (1008), Expect = 2.710e-127
Identity = 189/271 (69.74%), Postives = 220/271 (81.18%), Query Frame = 1 
Query:    1 VRLAILDEVHLLHDERGAVLEALVARMHRQVEQSKSHLRIVGLSATLPNYEDVATFLRVNPARGLFFFDNSFRPCPLQLTYVGISEKRPLKRLEMMNQVCYEKVEAYAGKQQVIIFVHSRKDTVKTASVIRDMAVENDKLTAFLPEDSPSRGILVDEAATAKDDGLRDLLPFGFAVHHAGMHRDDRTLVEDLFADGHVQVLVSTATLAWGVNLPAHTVIIKGTQVYSPDKGEWVELSPLDVMQMLGRAGRPQYDTFGEGFLLTQHSELLYY 813
            V+L I+DE+HLLHD RG VLE++VAR  RQ+E +K  +R+VGLSATLPNYEDVA FLRVNP +GLF+FDNS+RP PL   YVGI+ K+PL+R ++MN +CYEKV   AGK QV+IFVHSRK+T KTA  IRD A+ ND L  FL EDS SR IL       K   L+DLLP+GFA+HHAGM R DR LVEDLFADGH QVLVSTATLAWGVNLPAHTVIIKGTQ+Y+P+KG W ELSPLDVMQMLGRAGRPQYD++GEG ++T HSEL YY
Sbjct:  648 VKLLIIDEIHLLHDNRGPVLESIVARTLRQIETTKEFIRLVGLSATLPNYEDVALFLRVNPDKGLFYFDNSYRPVPLSQQYVGITVKKPLQRFQLMNDICYEKVMGVAGKHQVLIFVHSRKETAKTARAIRDAALANDTLGRFLKEDSASREILQTHTDLVKSSDLKDLLPYGFAIHHAGMTRTDRQLVEDLFADGHAQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDVMQMLGRAGRPQYDSYGEGIIVTGHSELQYY 918
[Close]
BLAST of mRNA_M-pyrifera_M_contig87732.20383.1 vs. uniprot
Match: UPI000523C5A0 (U5 small nuclear ribonucleoprotein 200 kDa helicase n=1 Tax=Nestor notabilis TaxID=176057 RepID=UPI000523C5A0)

HSP 1 Score: 387 bits (995), Expect = 5.850e-127
Identity = 188/271 (69.37%), Postives = 223/271 (82.29%), Query Frame = 1 
Query:    1 VRLAILDEVHLLHDERGAVLEALVARMHRQVEQSKSHLRIVGLSATLPNYEDVATFLRVNPARGLFFFDNSFRPCPLQLTYVGISEKRPLKRLEMMNQVCYEKVEAYAGKQQVIIFVHSRKDTVKTASVIRDMAVENDKLTAFLPEDSPSRGILVDEAATAKDDGLRDLLPFGFAVHHAGMHRDDRTLVEDLFADGHVQVLVSTATLAWGVNLPAHTVIIKGTQVYSPDKGEWVELSPLDVMQMLGRAGRPQYDTFGEGFLLTQHSELLYY 813
            VRL ILDE+HLLHD+RG VLE+LVAR  R +E ++  +R+VGLSATLPNYEDVATFLRV+PA+GLF+FDNSFRP PL+ TYVGI+EK+ +KR ++MN++ YEK+  +AGK QV++FVHSRK+T KTA  IRDM +E D L  FL E S S  +L  EA   K+  L+DLLP+GFA+HHAGM R DRTLVEDLFAD H+QVLVSTATLAWGVNLPAHTVIIKGTQVYSP+KG W EL  LD++QMLGRAGRPQYDT GEG L+T H EL YY
Sbjct:  150 VRLVILDEIHLLHDDRGPVLESLVARAIRNIEMTQEDVRLVGLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYY 420
[Close]
BLAST of mRNA_M-pyrifera_M_contig87732.20383.1 vs. uniprot
Match: A0A5P1EA13_ASPOF (Uncharacterized protein n=1 Tax=Asparagus officinalis TaxID=4686 RepID=A0A5P1EA13_ASPOF)

HSP 1 Score: 406 bits (1043), Expect = 1.690e-126
Identity = 193/271 (71.22%), Postives = 229/271 (84.50%), Query Frame = 1 
Query:    1 VRLAILDEVHLLHDERGAVLEALVARMHRQVEQSKSHLRIVGLSATLPNYEDVATFLRVNPARGLFFFDNSFRPCPLQLTYVGISEKRPLKRLEMMNQVCYEKVEAYAGKQQVIIFVHSRKDTVKTASVIRDMAVENDKLTAFLPEDSPSRGILVDEAATAKDDGLRDLLPFGFAVHHAGMHRDDRTLVEDLFADGHVQVLVSTATLAWGVNLPAHTVIIKGTQVYSPDKGEWVELSPLDVMQMLGRAGRPQYDTFGEGFLLTQHSELLYY 813
            VRL I+DE+HLLHD RG VLE++VAR  RQ+E +K H+R+VGLSATLPNYEDVA FLRV+P++GLF FDNS+RPCPLQ  Y+GI+ K+PL+R ++MN +CYEKV + AGK QV+IFVHSRK+T KTA  IRD A+ ND L+ FL +DS SR IL  +    K + L+DLLP+GFA+HHAGM R DRTLVEDLFADGHVQVLVSTATLAWGVNLPAHTVIIKGTQ+Y+P+KG W ELSPLDVMQMLGRAGRPQYD++GEG +LT HSEL YY
Sbjct:  639 VRLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVHPSKGLFHFDNSYRPCPLQQQYIGITVKKPLQRFQLMNDICYEKVLSAAGKHQVLIFVHSRKETAKTARAIRDTALANDTLSKFLKDDSASREILQSQTELVKSNDLKDLLPYGFAIHHAGMARVDRTLVEDLFADGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDVMQMLGRAGRPQYDSYGEGIILTGHSELQYY 909
[Close]
BLAST of mRNA_M-pyrifera_M_contig87732.20383.1 vs. uniprot
Match: UPI000522C854 (U5 small nuclear ribonucleoprotein 200 kDa helicase n=3 Tax=Neognathae TaxID=8825 RepID=UPI000522C854)

HSP 1 Score: 380 bits (977), Expect = 2.300e-126
Identity = 183/265 (69.06%), Postives = 218/265 (82.26%), Query Frame = 1 
Query:   19 DEVHLLHDERGAVLEALVARMHRQVEQSKSHLRIVGLSATLPNYEDVATFLRVNPARGLFFFDNSFRPCPLQLTYVGISEKRPLKRLEMMNQVCYEKVEAYAGKQQVIIFVHSRKDTVKTASVIRDMAVENDKLTAFLPEDSPSRGILVDEAATAKDDGLRDLLPFGFAVHHAGMHRDDRTLVEDLFADGHVQVLVSTATLAWGVNLPAHTVIIKGTQVYSPDKGEWVELSPLDVMQMLGRAGRPQYDTFGEGFLLTQHSELLYY 813
            DE+HLLHD+RG VLE+LVAR  R +E ++  +R+VGLSATLPNYEDVATFLRV+PA+GLF+FDNSFRP PL+ TYVGI+EK+ +KR ++MN++ YEK+  +AGK QV++FVHSRK+T KTA  IRDM +E D L  FL E S S  +L  EA   K+  L+DLLP+GFA+HHAGM R DRTLVEDLFAD H+QVLVSTATLAWGVNLPAHTVIIKGTQVYSP+KG W EL  LD++QMLGRAGRPQYDT GEG L+T H EL YY
Sbjct:    1 DEIHLLHDDRGPVLESLVARAIRNIEMTQEDVRLVGLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYY 265
[Close]
BLAST of mRNA_M-pyrifera_M_contig87732.20383.1 vs. uniprot
Match: A0A2K3PR66_TRIPR (U5 small nuclear ribonucleoprotein 200 kDa helicase-like protein (Fragment) n=2 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3PR66_TRIPR)

HSP 1 Score: 392 bits (1008), Expect = 2.520e-126
Identity = 189/271 (69.74%), Postives = 220/271 (81.18%), Query Frame = 1 
Query:    1 VRLAILDEVHLLHDERGAVLEALVARMHRQVEQSKSHLRIVGLSATLPNYEDVATFLRVNPARGLFFFDNSFRPCPLQLTYVGISEKRPLKRLEMMNQVCYEKVEAYAGKQQVIIFVHSRKDTVKTASVIRDMAVENDKLTAFLPEDSPSRGILVDEAATAKDDGLRDLLPFGFAVHHAGMHRDDRTLVEDLFADGHVQVLVSTATLAWGVNLPAHTVIIKGTQVYSPDKGEWVELSPLDVMQMLGRAGRPQYDTFGEGFLLTQHSELLYY 813
            V+L I+DE+HLLHD RG VLE++VAR  RQ+E +K  +R+VGLSATLPNYEDVA FLRVNP +GLF+FDNS+RP PL   YVGI+ K+PL+R ++MN +CYEKV   AGK QV+IFVHSRK+T KTA  IRD A+ ND L  FL EDS SR IL       K   L+DLLP+GFA+HHAGM R DR LVEDLFADGH QVLVSTATLAWGVNLPAHTVIIKGTQ+Y+P+KG W ELSPLDVMQMLGRAGRPQYD++GEG ++T HSEL YY
Sbjct:  382 VKLLIIDEIHLLHDNRGPVLESIVARTLRQIETTKEFIRLVGLSATLPNYEDVALFLRVNPDKGLFYFDNSYRPVPLSQQYVGITVKKPLQRFQLMNDICYEKVMGVAGKHQVLIFVHSRKETAKTARAIRDAALANDTLGRFLKEDSASREILQTHTDLVKSSDLKDLLPYGFAIHHAGMTRTDRQLVEDLFADGHAQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDVMQMLGRAGRPQYDSYGEGIIVTGHSELQYY 652
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig87732.20383.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1G5F9_9STRA2.790e-13470.85Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A8H7ZRZ2_9FUNG5.250e-13268.27P-loop containing nucleoside triphosphate hydrolas... [more]
A0A5K0VK60_9MAGN1.790e-12870.48Uncharacterized protein (Fragment) n=4 Tax=Nymphae... [more]
A0A6J5XQT2_PRUAR7.630e-12867.90Uncharacterized protein n=1 Tax=Prunus armeniaca T... [more]
A0A392M7C7_9FABA2.020e-12769.00U5 small nuclear ribonucleoprotein 200 kDa helicas... [more]
A0A2K3NEK5_TRIPR2.710e-12769.74U5 small nuclear ribonucleoprotein 200 kDa helicas... [more]
UPI000523C5A05.850e-12769.37U5 small nuclear ribonucleoprotein 200 kDa helicas... [more]
A0A5P1EA13_ASPOF1.690e-12671.22Uncharacterized protein n=1 Tax=Asparagus officina... [more]
UPI000522C8542.300e-12669.06U5 small nuclear ribonucleoprotein 200 kDa helicas... [more]
A0A2K3PR66_TRIPR2.520e-12669.74U5 small nuclear ribonucleoprotein 200 kDa helicas... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig87732contigM-pyrifera_M_contig87732:3..815 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score396.7
Seed ortholog evalue8.5e-108
Seed eggNOG ortholog42345.XP_008811841.1
Preferred nameSNRNP200
KEGG koko:K12854
KEGG Pathwayko03040,map03040
KEGG ModuleM00354,M00355
Hectar predicted targeting categoryother localisation
GOsGO:0000245,GO:0000354,GO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005682,GO:0005911,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0008380,GO:0009506,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022607,GO:0022613,GO:0022618,GO:0030054,GO:0030532,GO:0031974,GO:0031981,GO:0032991,GO:0034622,GO:0034641,GO:0042623,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0046540,GO:0055044,GO:0065003,GO:0070013,GO:0070035,GO:0071013,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097525,GO:0097526,GO:0120114,GO:0140098,GO:1901360,GO:1902494,GO:1990904
EggNOG free text desc.Sec63 Brl domain
EggNOG OGs37JMG@33090,3GG15@35493,3KPH4@4447,COG1204@1,KOG0951@2759
Ec32 ortholog descriptionImmunoglobulin E-set
Ec32 orthologEc-18_000740.2
EC3.6.4.13
COG Functional cat.A
Best tax levelLiliopsida
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03041
Exons1
Model size813
Cds size813
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816786.8327253-CDS-M-pyrifera_M_contig87732:2..8151622816786.8327253-CDS-M-pyrifera_M_contig87732:2..815Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87732 3..815 -
1692278178.1806846-CDS-M-pyrifera_M_contig87732:2..8151692278178.1806846-CDS-M-pyrifera_M_contig87732:2..815Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87732 3..815 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig87732.20383.1prot_M-pyrifera_M_contig87732.20383.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig87732 3..815 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig87732.20383.1

>prot_M-pyrifera_M_contig87732.20383.1 ID=prot_M-pyrifera_M_contig87732.20383.1|Name=mRNA_M-pyrifera_M_contig87732.20383.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=271bp
VRLAILDEVHLLHDERGAVLEALVARMHRQVEQSKSHLRIVGLSATLPNY
EDVATFLRVNPARGLFFFDNSFRPCPLQLTYVGISEKRPLKRLEMMNQVC
YEKVEAYAGKQQVIIFVHSRKDTVKTASVIRDMAVENDKLTAFLPEDSPS
RGILVDEAATAKDDGLRDLLPFGFAVHHAGMHRDDRTLVEDLFADGHVQV
LVSTATLAWGVNLPAHTVIIKGTQVYSPDKGEWVELSPLDVMQMLGRAGR
PQYDTFGEGFLLTQHSELLYY
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mRNA from alignment at M-pyrifera_M_contig87732:3..815-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig87732.20383.1 ID=mRNA_M-pyrifera_M_contig87732.20383.1|Name=mRNA_M-pyrifera_M_contig87732.20383.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=813bp|location=Sequence derived from alignment at M-pyrifera_M_contig87732:3..815- (Macrocystis pyrifera P11B4 male)
GTTCGATTGGCTATTTTAGACGAAGTGCACTTGTTGCATGATGAACGTGG
AGCTGTATTAGAAGCTTTGGTAGCTAGGATGCATCGCCAAGTGGAGCAAT
CCAAGTCTCATTTGCGCATCGTGGGTCTTAGTGCTACATTGCCGAATTAC
GAAGATGTCGCAACGTTTTTGCGGGTCAACCCAGCGCGTGGCTTGTTCTT
CTTTGACAACTCGTTCCGCCCATGTCCTCTTCAATTGACATATGTAGGGA
TTTCTGAGAAACGCCCTCTCAAGCGATTGGAGATGATGAACCAAGTGTGC
TATGAAAAAGTGGAGGCGTACGCAGGGAAGCAACAAGTGATTATTTTTGT
GCATTCACGCAAAGACACTGTCAAGACTGCTTCAGTCATCCGTGATATGG
CTGTAGAGAATGACAAACTGACCGCCTTCCTCCCAGAGGATTCTCCAAGT
CGTGGAATCTTGGTGGATGAAGCTGCTACTGCAAAGGATGATGGGCTGCG
TGATCTCTTACCATTTGGGTTCGCAGTCCATCATGCAGGAATGCACCGTG
ATGACAGGACTTTGGTGGAAGATTTGTTTGCAGATGGTCATGTGCAGGTT
CTTGTAAGCACTGCAACATTGGCTTGGGGTGTCAATCTCCCAGCACATAC
TGTGATCATCAAAGGCACCCAAGTGTACTCCCCTGATAAAGGTGAATGGG
TTGAATTGTCTCCACTAGATGTCATGCAAATGCTTGGACGTGCAGGTCGT
CCTCAGTATGATACGTTTGGGGAAGGATTTCTCCTCACTCAACACTCTGA
ACTACTTTACTAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig87732:3..815-

>mRNA_M-pyrifera_M_contig87732.20383.1 ID=mRNA_M-pyrifera_M_contig87732.20383.1|Name=mRNA_M-pyrifera_M_contig87732.20383.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1626bp|location=Sequence derived from alignment at M-pyrifera_M_contig87732:3..815- (Macrocystis pyrifera P11B4 male)
GTTCGATTGGCTATTTTAGACGAAGTGCACTTGTTGCATGATGAACGTGG
AGCTGTATTAGAAGCTTTGGTAGCTAGGATGCATCGCCAAGTGGAGCAAT
CCAAGTCTCATTTGCGCATCGTGGGTCTTAGTGCTACATTGCCGAATTAC
GAAGATGTCGCAACGTTTTTGCGGGTCAACCCAGCGCGTGGCTTGTTCTT
CTTTGACAACTCGTTCCGCCCATGTCCTCTTCAATTGACATATGTAGGGA
TTTCTGAGAAACGCCCTCTCAAGCGATTGGAGATGATGAACCAAGTGTGC
TATGAAAAAGTGGAGGCGTACGCAGGGAAGCAACAAGTGATTATTTTTGT
GCATTCACGCAAAGACACTGTCAAGACTGCTTCAGTCATCCGTGATATGG
CTGTAGAGAATGACAAACTGACCGCCTTCCTCCCAGAGGATTCTCCAAGT
CGTGGAATCTTGGTGGATGAAGCTGCTACTGCAAAGGATGATGGGCTGCG
TGATCTCTTACCATTTGGGTTCGCAGTCCATCATGCAGGAATGCACCGTG
ATGACAGGACTTTGGTGGAAGATTTGTTTGCAGATGGTCATGTGCAGGTT
CTTGTAAGCACTGCAACATTGGCTTGGGGTGTCAATCTCCCAGCACATAC
TGTGATCATCAAAGGCACCCAAGTGTACTCCCCTGATAAAGGTGAATGGG
TTGAATTGTCTCCACTAGATGTCATGCAAATGCTTGGACGTGCAGGTCGT
CCTCAGTATGATACGTTTGGGGAAGGATTTCTCCTCACTCAACACTCTGA
ACTACTTTACTACGTTCGATTGGCTATTTTAGACGAAGTGCACTTGTTGC
ATGATGAACGTGGAGCTGTATTAGAAGCTTTGGTAGCTAGGATGCATCGC
CAAGTGGAGCAATCCAAGTCTCATTTGCGCATCGTGGGTCTTAGTGCTAC
ATTGCCGAATTACGAAGATGTCGCAACGTTTTTGCGGGTCAACCCAGCGC
GTGGCTTGTTCTTCTTTGACAACTCGTTCCGCCCATGTCCTCTTCAATTG
ACATATGTAGGGATTTCTGAGAAACGCCCTCTCAAGCGATTGGAGATGAT
GAACCAAGTGTGCTATGAAAAAGTGGAGGCGTACGCAGGGAAGCAACAAG
TGATTATTTTTGTGCATTCACGCAAAGACACTGTCAAGACTGCTTCAGTC
ATCCGTGATATGGCTGTAGAGAATGACAAACTGACCGCCTTCCTCCCAGA
GGATTCTCCAAGTCGTGGAATCTTGGTGGATGAAGCTGCTACTGCAAAGG
ATGATGGGCTGCGTGATCTCTTACCATTTGGGTTCGCAGTCCATCATGCA
GGAATGCACCGTGATGACAGGACTTTGGTGGAAGATTTGTTTGCAGATGG
TCATGTGCAGGTTCTTGTAAGCACTGCAACATTGGCTTGGGGTGTCAATC
TCCCAGCACATACTGTGATCATCAAAGGCACCCAAGTGTACTCCCCTGAT
AAAGGTGAATGGGTTGAATTGTCTCCACTAGATGTCATGCAAATGCTTGG
ACGTGCAGGTCGTCCTCAGTATGATACGTTTGGGGAAGGATTTCTCCTCA
CTCAACACTCTGAACTACTTTACTAC
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