mRNA_M-pyrifera_M_contig87365.20302.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig87365.20302.1 vs. uniprot
Match: UPI001E534A8B (phytanoyl-CoA dioxygenase family protein n=1 Tax=Catenulispora pinisilvae TaxID=2705253 RepID=UPI001E534A8B) HSP 1 Score: 122 bits (305), Expect = 3.890e-32 Identity = 66/141 (46.81%), Postives = 81/141 (57.45%), Query Frame = 1 Query: 4 GSFGDPPLYKVNLVSRGRALLLLMLYTDVDLQDAPTRIRVGSHAEVARALARLGDDVTFIPERH-APDVLDLPIDHAVGDAGTVYLCHPFLVHAASWPHDGDGPRVIGQPCIHHPQGEWLGGFDYDSDRDAPVLTAVRGAL 423 G+ G P Y+ N+ SRGR LL L+L+ DV QDAPTR+ GSH V LA G+D T + P VL P+ HA G AG V+LCHPF+VH A+WPH G PR+I QP +H G F D APV A+ L Sbjct: 59 GAAGGP--YRCNVRSRGRGLLALLLFGDVGPQDAPTRLVSGSHLYVPEFLAPYGEDGTVSDGCYWRPSVLCRPVVHATGQAGDVFLCHPFIVHTATWPHTGTAPRMIAQPAVHVRDG-----FAIDGSDSAPVARAIVAGL 192
BLAST of mRNA_M-pyrifera_M_contig87365.20302.1 vs. uniprot
Match: A0A358SPA1_9ACTN (Phytanoyl-CoA dioxygenase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A358SPA1_9ACTN) HSP 1 Score: 123 bits (308), Expect = 5.730e-32 Identity = 67/142 (47.18%), Postives = 81/142 (57.04%), Query Frame = 1 Query: 1 DGSFGDPPLYKVNLVSRGRALLLLMLYTDVDLQDAPTRIRVGSHAEVARALARLGDDVTFIPERH-APDVLDLPIDHAVGDAGTVYLCHPFLVHAASWPHDGDGPRVIGQPCIHHPQGEWLGGFDYDSDRDAPVLTAVRGAL 423 +GS+ P Y VN+ SR R LL L+L+TDV L +APTR+ GSH V LA G+ T P VL P+ HA G AG V+LCHPFLVH A+WPH G PR+I QP +H GGF D +PV AV L Sbjct: 112 EGSYDGPGGYWVNVRSRARGLLALLLFTDVGLDEAPTRLVCGSHLYVPEFLAPYGEAGTSADAVFWRPSVLCRPVAHAAGRAGDVFLCHPFLVHTATWPHRGSTPRMIAQPAVHV-----RGGFALDGSDPSPVARAVVAGL 248
BLAST of mRNA_M-pyrifera_M_contig87365.20302.1 vs. uniprot
Match: A0A4R2C3J4_9ACTN (Phytanoyl-CoA dioxygenase PhyH n=3 Tax=Kribbella TaxID=182639 RepID=A0A4R2C3J4_9ACTN) HSP 1 Score: 120 bits (300), Expect = 1.060e-30 Identity = 71/138 (51.45%), Postives = 82/138 (59.42%), Query Frame = 1 Query: 28 YKVNLVSRGRALLLLMLYTDVDLQDAPTRIRVGSHAEVARALARLGDDVTFIPERHAPDVL----DLPIDHAVGDAGTVYLCHPFLVHAASWPHDGDGPRVIGQPCIHHPQGEWLGGFDYDSDRDA--PVLTAVRGAL 423 ++ N+ SR R LL + L TDV DAPTRIRVGSH + AR LA GD+ P P V+ D P+ A G AG VYLCHPFLVHAASWPH G GPR+I QP IH L F +DR A PV A+ AL Sbjct: 129 WRANIRSRERGLLAIFLLTDVGPDDAPTRIRVGSHVDAARVLAPAGDE-GLAPAEAGPPVVQASADRPVTEATGAAGDVYLCHPFLVHAASWPHRGTGPRMITQPGIH-----LLEPFPL-ADRSAAYPVEAAILDAL 259
BLAST of mRNA_M-pyrifera_M_contig87365.20302.1 vs. uniprot
Match: A0A4R4P3T2_9ACTN (Phytanoyl-CoA dioxygenase n=1 Tax=Kribbella albertanoniae TaxID=1266829 RepID=A0A4R4P3T2_9ACTN) HSP 1 Score: 117 bits (294), Expect = 7.910e-30 Identity = 67/140 (47.86%), Postives = 80/140 (57.14%), Query Frame = 1 Query: 7 SFGDPPLYKVNLVSRGRALLLLMLYTDVDLQDAPTRIRVGSHAEVARALARLGDDVTFIPERHAPDV---LDLPIDHAVGDAGTVYLCHPFLVHAASWPHDGDGPRVIGQPCIHHPQGEWLGGFDYDSDRDAPVLTAVRG 417 S+ D ++ N+ SR R LL L L TDV DAPTRIRVGSHA+ AR LA GDD + E P V D + A G AG VYLCHPFLVHAASWPH G PR+I QP + + L +A +L A+ G Sbjct: 120 SYWDGTDWRANIRSRERGLLSLFLLTDVGADDAPTRIRVGSHADAARVLAPAGDDGLTMAESGPPIVEASADRRVVEATGSAGDVYLCHPFLVHAASWPHRGISPRIITQPGVALLEPFTLTDPTAAHPVEAAILAAISG 259
BLAST of mRNA_M-pyrifera_M_contig87365.20302.1 vs. uniprot
Match: A0A0H5NI67_NOCFR (Phytanoyl-CoA dioxygenase (PhyH) n=13 Tax=Nocardia TaxID=1817 RepID=A0A0H5NI67_NOCFR) HSP 1 Score: 117 bits (293), Expect = 1.140e-29 Identity = 70/144 (48.61%), Postives = 85/144 (59.03%), Query Frame = 1 Query: 1 DGSFGDPPLYKVNLVSRGRALLLLMLYTDVDLQDAPTRIRVGSHAEVARALARLGD---DVTFIPERHAPDVLDLPIDHAVGDAGTVYLCHPFLVHAASWPHDGDGPRVIGQPCIHHPQGEWLGGFDYDSDRDAPVLTAVRGAL 423 D GD ++ N+VSR RALL+L L+TDV DAPTR+RVGSH +VAR L R GD D + R A D I HA G AG VYLCHPFLVHA P+ G PR++GQP + + G + D APV A+R AL Sbjct: 119 DSDPGDYLTWRANVVSRDRALLMLFLFTDVGEADAPTRLRVGSHRDVARILHREGDTGLDARDLAARAAAATADREIAHATGAAGDVYLCHPFLVHAGQ-PNRGTRPRILGQPKLAPRARFRIDGAETDL---APVEQAIRRAL 258
BLAST of mRNA_M-pyrifera_M_contig87365.20302.1 vs. uniprot
Match: A0A7G3A5N2_9PROT (Phytanoyl-CoA dioxygenase n=1 Tax=Hyphomonas sp. TaxID=87 RepID=A0A7G3A5N2_9PROT) HSP 1 Score: 116 bits (291), Expect = 2.590e-29 Identity = 71/155 (45.81%), Postives = 90/155 (58.06%), Query Frame = 1 Query: 1 DGSFGDPPLY---KVNLVSRGRALLLLMLYTDVDLQDAPTRIRVGSHAEVARALARLGDDV---------TFIPERHAPDVLDLPIDHAVGDAGTVYLCHPFLVHAASWPHDGDGPRVIGQPCIHHPQGEWLGGFDYDSDRDAPVLTAVRGALIK 429 D SFGD P + + N+ S+GRALL+L L+TD DAPTRIR GSH ++AR LA G+D F H P+VL AVG+AGTVYLCHPFLVHAA H G PR++ QP + + L D +R +PV A+R AL + Sbjct: 119 DVSFGDSPDFMDWRANVNSKGRALLMLFLFTDTGPDDAPTRIRAGSHKDIARRLAEAGEDGLALRELAADVFSDSSHRPEVL------AVGEAGTVYLCHPFLVHAAQR-HRGAAPRILAQPPLLPREAFDLARRD---ERYSPVERAIRDALAE 263
BLAST of mRNA_M-pyrifera_M_contig87365.20302.1 vs. uniprot
Match: UPI0003A97E94 (phytanoyl-CoA dioxygenase family protein n=1 Tax=Actinopolymorpha alba TaxID=533267 RepID=UPI0003A97E94) HSP 1 Score: 116 bits (290), Expect = 3.340e-29 Identity = 65/143 (45.45%), Postives = 83/143 (58.04%), Query Frame = 1 Query: 7 SFGDPPLYKVNLVSRGRALLLLMLYTDVDLQDAPTRIRVGSHAEVARALARLGDDVTFIPERHAPDVLDL----PIDHAVGDAGTVYLCHPFLVHAASWPHDGDGPRVIGQPCIHHPQGEWLGGFDYDSDRDAPVLTAVRGAL 423 SF ++ N+ SR R LL L L+TDV L+DAPTR+RVGSH + AR L G+D + A +L+ P+ H G AG VYLCHPFLVHAASWPH G PR++ QP + + L D +R PV A+ AL Sbjct: 122 SFQSGDTWRTNIRSRDRGLLALFLFTDVGLRDAPTRVRVGSHTDAARVLEAAGEDGLDLAS--AGPLLEASAARPVAHVTGAAGDVYLCHPFLVHAASWPHRGTTPRIMAQPGVALLEPFRLA----DRERAYPVERAILSAL 258
BLAST of mRNA_M-pyrifera_M_contig87365.20302.1 vs. uniprot
Match: UPI00198820BA (Phytanoyl-CoA dioxygenase family protein n=1 Tax=Ferruginibacter sp. TaxID=1940288 RepID=UPI00198820BA) HSP 1 Score: 116 bits (290), Expect = 3.650e-29 Identity = 65/139 (46.76%), Postives = 87/139 (62.59%), Query Frame = 1 Query: 13 GDPPLYKVNLVSRGRALLLLMLYTDVDLQDAPTRIRVGSHAEVARALARLGD-DVTFIP-ERHAPDVLDLPIDHAVGDAGTVYLCHPFLVHAASWPHDGDGPRVIGQPCIHHPQGEWLGGFDYDSDRDAPVLTAVRGAL 423 GD +++N+ SRGRALL+L L++DV +DAPTRI VGSH++V R L GD ++F+ + LD P+ A G+AGTVYLCHPFL+HAA PH G PR + QP +H + L D R +PV A+R L Sbjct: 122 GDDGSWRLNVTSRGRALLMLFLFSDVGAEDAPTRILVGSHSDVPRLLKPAGDAGLSFLELAQELNQSLDRPVAFATGEAGTVYLCHPFLIHAAQ-PHRGSTPRFMAQPPLHPAEPLRLHRND---GRYSPVEQAIRSGL 256
BLAST of mRNA_M-pyrifera_M_contig87365.20302.1 vs. uniprot
Match: UPI001B81974F (phytanoyl-CoA dioxygenase family protein n=1 Tax=Actinospica sp. MGRD01-02 TaxID=2828514 RepID=UPI001B81974F) HSP 1 Score: 115 bits (288), Expect = 5.410e-29 Identity = 67/139 (48.20%), Postives = 81/139 (58.27%), Query Frame = 1 Query: 16 DPPLYKVNLVSRGRALLLLMLYTDVDLQDAPTRIRVGSHAEVARALARLGD---DVTFIPERHAPDVLDLPIDHAVGDAGTVYLCHPFLVHAASWPHDGDGPRVIGQPCIHHPQGEWLGGFDYDSDRDAPVLTAVRGAL 423 DP ++VNL SRGRALL+L L+++V DAPTRIRVGSH V R L G+ + I +R A DLP+ A G G VYLCHPFLVHAA PH G PR + QP + G Y D D+PV A+R L Sbjct: 120 DPMSWRVNLTSRGRALLMLFLFSEVGENDAPTRIRVGSHLAVPRLLESAGEAGLPMREISQRAAAATQDLPVALATGRPGDVYLCHPFLVHAAQ-PHRGTRPRFLAQPPLDP------GPTPYSVDGDSPVERAIRLGL 251
BLAST of mRNA_M-pyrifera_M_contig87365.20302.1 vs. uniprot
Match: A0A8I1UM46_9SPHN (Phytanoyl-CoA dioxygenase n=1 Tax=Altererythrobacter sp. TaxID=1872480 RepID=A0A8I1UM46_9SPHN) HSP 1 Score: 114 bits (285), Expect = 1.930e-28 Identity = 69/149 (46.31%), Postives = 90/149 (60.40%), Query Frame = 1 Query: 1 DGSFG-DPPLY---KVNLVSRGRALLLLMLYTDVDLQDAPTRIRVGSHAEVARALARLGDDVTFIPERHAPDVLD---LPIDHAVGDAGTVYLCHPFLVHAASWPHDGDGPRVIGQPCIHHPQGEWLGGFDYDSDRDAPVLTAVRGALI 426 D SFG D P + ++NL SRGRALL+L L++D+ + DAPTRIR GS +AR L G++ + E A + LP A G+AGTVYLCHPFLVH+A H GD PR + QP + P+G G Y D PV+ AVR A++ Sbjct: 120 DMSFGTDSPDFMEWRINLHSRGRALLMLFLFSDIGIDDAPTRIRCGSQRTIARQLISAGEEGLTLRELAATGFSESAHLPEALATGEAGTVYLCHPFLVHSAQ-SHRGDTPRFLAQPPLQ-PRGR--NGIAYGDDAMLPVVRAVREAIV 264 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig87365.20302.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig87365.20302.1 >prot_M-pyrifera_M_contig87365.20302.1 ID=prot_M-pyrifera_M_contig87365.20302.1|Name=mRNA_M-pyrifera_M_contig87365.20302.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=145bp DGSFGDPPLYKVNLVSRGRALLLLMLYTDVDLQDAPTRIRVGSHAEVARAback to top mRNA from alignment at M-pyrifera_M_contig87365:398..832- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig87365.20302.1 ID=mRNA_M-pyrifera_M_contig87365.20302.1|Name=mRNA_M-pyrifera_M_contig87365.20302.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=435bp|location=Sequence derived from alignment at M-pyrifera_M_contig87365:398..832- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig87365:398..832- >mRNA_M-pyrifera_M_contig87365.20302.1 ID=mRNA_M-pyrifera_M_contig87365.20302.1|Name=mRNA_M-pyrifera_M_contig87365.20302.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=870bp|location=Sequence derived from alignment at M-pyrifera_M_contig87365:398..832- (Macrocystis pyrifera P11B4 male)back to top |