mRNA_M-pyrifera_M_contig8736.20297.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8736.20297.1
Unique NamemRNA_M-pyrifera_M_contig8736.20297.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig8736.20297.1 vs. uniprot
Match: A0A6H5KRB3_9PHAE (HSP60 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KRB3_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 8.550e-32
Identity = 67/78 (85.90%), Postives = 72/78 (92.31%), Query Frame = 2 
Query:    2 AMNAGAEGAVVVGELLKSDSPQWGYNAASGEYGDMIAAGIIDPTKVVRTALVDAQSVAALLMTAEAMVTDLPAEEAPA 235
            AMNAG EGAVVVGELLK++ P+WG+NAA+GEY DMI AGIIDPTKVVRTALVDAQSVAALLMTAEAMV DLP EEAPA
Sbjct:  479 AMNAGVEGAVVVGELLKAEDPKWGHNAATGEYCDMIQAGIIDPTKVVRTALVDAQSVAALLMTAEAMVADLPEEEAPA 556
[Close]
BLAST of mRNA_M-pyrifera_M_contig8736.20297.1 vs. uniprot
Match: A0A662X5K6_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X5K6_9STRA)

HSP 1 Score: 108 bits (270), Expect = 1.810e-28
Identity = 61/86 (70.93%), Postives = 73/86 (84.88%), Query Frame = 2 
Query:    2 AMNAGAEGAVVVGELLKSDSPQWGYNAASGEYGDMIAAGIIDPTKVVRTALVDAQSVAALLMTAEAMVTDLPAEEAPAGAPPSMGG 259
            A NAG EGAVVVG++L++DSP +G+NA +GEY DM+ AGIIDPTKVVRT LVDA SVA+L+MTAEA++ D P EEA AGAPP MGG
Sbjct:   23 AKNAGHEGAVVVGKMLENDSPAFGFNAQTGEYVDMVEAGIIDPTKVVRTGLVDASSVASLMMTAEALIADHP-EEAGAGAPP-MGG 106
[Close]
BLAST of mRNA_M-pyrifera_M_contig8736.20297.1 vs. uniprot
Match: A0A4V1ZU20_9PROT (Molecular chaperone GroEL (Fragment) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A4V1ZU20_9PROT)

HSP 1 Score: 100 bits (249), Expect = 1.300e-25
Identity = 52/83 (62.65%), Postives = 67/83 (80.72%), Query Frame = 2 
Query:    8 NAGAEGAVVVGELLKSDSPQWGYNAASGEYGDMIAAGIIDPTKVVRTALVDAQSVAALLMTAEAMVTDLPAEEAPAGAPPSMG 256
            NAG +GAV+ G++L++DS  +G++A SGE+ DMIAAGIIDPTKVVRTAL DA SVA+LL+T EAM+ D P ++ PAG PP  G
Sbjct:    2 NAGEDGAVIAGKVLENDSYNFGFDAQSGEFKDMIAAGIIDPTKVVRTALQDAASVASLLITTEAMIADRPEKKGPAGGPPGGG 84
[Close]
BLAST of mRNA_M-pyrifera_M_contig8736.20297.1 vs. uniprot
Match: W7TM88_9STRA (Chaperonin Cpn60/TCP-1 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TM88_9STRA)

HSP 1 Score: 108 bits (271), Expect = 1.440e-25
Identity = 59/80 (73.75%), Postives = 65/80 (81.25%), Query Frame = 2 
Query:    2 AMNAGAEGAVVVGELLKSDSPQWGYNAASGEYGDMIAAGIIDPTKVVRTALVDAQSVAALLMTAEAMVTDLPAEEAPAGA 241
            A NAG EGAVVVGEL+K D P+ GYNA +GEY DM  AGIIDPTKVVRTALVDAQSVAAL++T EAMV DLP +E  A A
Sbjct:  478 ANNAGVEGAVVVGELMKKDKPELGYNAQTGEYVDMFEAGIIDPTKVVRTALVDAQSVAALMITTEAMVADLPKDEGDAPA 557
[Close]
BLAST of mRNA_M-pyrifera_M_contig8736.20297.1 vs. uniprot
Match: UPI00040B6BCB (chaperonin GroEL n=1 Tax=Cucumibacter marinus TaxID=1121252 RepID=UPI00040B6BCB)

HSP 1 Score: 107 bits (268), Expect = 3.430e-25
Identity = 57/86 (66.28%), Postives = 67/86 (77.91%), Query Frame = 2 
Query:    2 AMNAGAEGAVVVGELLKSDSPQWGYNAASGEYGDMIAAGIIDPTKVVRTALVDAQSVAALLMTAEAMVTDLPAEEAPAGAPPSMGG 259
            A NAGAEG+VVVG++L   S  +GYNA +GEYGDMI  GI+DP KVVRTAL DA SVA+LL+T EAMV ++P EEAPA   P MGG
Sbjct:  454 AQNAGAEGSVVVGKILDESSVLYGYNAQTGEYGDMIEMGIVDPVKVVRTALQDAASVASLLITTEAMVAEIPKEEAPAAGAPDMGG 539
[Close]
BLAST of mRNA_M-pyrifera_M_contig8736.20297.1 vs. uniprot
Match: A0A2W6YMS3_9HYPH (Molecular chaperone GroEL (Fragment) n=1 Tax=Chelatococcus sp. TaxID=1953771 RepID=A0A2W6YMS3_9HYPH)

HSP 1 Score: 100 bits (248), Expect = 7.680e-25
Identity = 50/76 (65.79%), Postives = 63/76 (82.89%), Query Frame = 2 
Query:    8 NAGAEGAVVVGELLKSDSPQWGYNAASGEYGDMIAAGIIDPTKVVRTALVDAQSVAALLMTAEAMVTDLPAEEAPA 235
            NAG +GAVVVG+LL++    WGY+A +GEYGDM+ AGIIDPTKVVRTA+ DA SVA LL+T EAM+ +LP ++APA
Sbjct:   61 NAGGDGAVVVGKLLEASDYAWGYDAQTGEYGDMVKAGIIDPTKVVRTAIQDAASVAGLLITTEAMIAELPKKDAPA 136
[Close]
BLAST of mRNA_M-pyrifera_M_contig8736.20297.1 vs. uniprot
Match: M4BZA5_HYAAE (Uncharacterized protein n=29 Tax=Peronosporaceae TaxID=4777 RepID=M4BZA5_HYAAE)

HSP 1 Score: 106 bits (264), Expect = 1.360e-24
Identity = 57/86 (66.28%), Postives = 71/86 (82.56%), Query Frame = 2 
Query:    2 AMNAGAEGAVVVGELLKSDSPQWGYNAASGEYGDMIAAGIIDPTKVVRTALVDAQSVAALLMTAEAMVTDLPAEEAPAGAPPSMGG 259
            A NAG EGAVVVG++L++DSP+ G+NA +GEY +++ AGIIDPTKVVRT LVDA SVA+L+MTAEA++ DLPAE    GA P MGG
Sbjct:  484 AKNAGHEGAVVVGKMLENDSPELGFNAQTGEYVNLVDAGIIDPTKVVRTGLVDASSVASLMMTAEALIADLPAEN---GAAPPMGG 566
[Close]
BLAST of mRNA_M-pyrifera_M_contig8736.20297.1 vs. uniprot
Match: A0A6U3QVY4_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A6U3QVY4_9STRA)

HSP 1 Score: 105 bits (263), Expect = 1.790e-24
Identity = 60/85 (70.59%), Postives = 68/85 (80.00%), Query Frame = 2 
Query:    2 AMNAGAEGAVVVGELLKSDSPQWGYNAASGEYGDMIAAGIIDPTKVVRTALVDAQSVAALLMTAEAMVTDLPAEEAPAGAPPSMG 256
            A NAGAEGAVVVGELLKSD  ++GYNA +GEY +M+ AGIIDP KVVRTALVDA S+A+L+MTAEAMV D P E    G PP MG
Sbjct:  483 ANNAGAEGAVVVGELLKSDDYKYGYNAQTGEYVNMMDAGIIDPAKVVRTALVDAASIASLMMTAEAMVADSPDE---GGPPPGMG 564
[Close]
BLAST of mRNA_M-pyrifera_M_contig8736.20297.1 vs. uniprot
Match: A0A2K3M1G2_TRIPR (Chaperonin CPN60-2 mitochondrial-like n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3M1G2_TRIPR)

HSP 1 Score: 97.8 bits (242), Expect = 1.940e-24
Identity = 51/82 (62.20%), Postives = 65/82 (79.27%), Query Frame = 2 
Query:    2 AMNAGAEGAVVVGELLKSDSPQWGYNAASGEYGDMIAAGIIDPTKVVRTALVDAQSVAALLMTAEAMVTDLPAEEAPAGAPP 247
            A NAG EGAVVVG+LL+ D+P  GY+AA GEY DM+ AGIIDP KV+RTALVDA SV++L+ T EA+V+DLP+++    A P
Sbjct:    9 ASNAGVEGAVVVGKLLEQDNPDLGYDAAKGEYVDMVKAGIIDPLKVIRTALVDAASVSSLMTTTEAIVSDLPSDDKDGSAMP 90
[Close]
BLAST of mRNA_M-pyrifera_M_contig8736.20297.1 vs. uniprot
Match: K3W969_GLOUD (Uncharacterized protein n=3 Tax=Pythiaceae TaxID=4782 RepID=K3W969_GLOUD)

HSP 1 Score: 105 bits (262), Expect = 2.490e-24
Identity = 58/86 (67.44%), Postives = 71/86 (82.56%), Query Frame = 2 
Query:    2 AMNAGAEGAVVVGELLKSDSPQWGYNAASGEYGDMIAAGIIDPTKVVRTALVDAQSVAALLMTAEAMVTDLPAEEAPAGAPPSMGG 259
            A NAG EGAVVVG+LL+++SP +G+NA + +Y DM+  GIIDPTKVVRT LVDA SVA+L+MTAEA++ DLP EEA AGA P MGG
Sbjct:  482 AKNAGEEGAVVVGKLLENESPFFGFNAQTAQYVDMVQEGIIDPTKVVRTGLVDASSVASLMMTAEALIADLP-EEAGAGAMPPMGG 566
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8736.20297.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KRB3_9PHAE8.550e-3285.90HSP60 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=... [more]
A0A662X5K6_9STRA1.810e-2870.93Uncharacterized protein (Fragment) n=2 Tax=Nothoph... [more]
A0A4V1ZU20_9PROT1.300e-2562.65Molecular chaperone GroEL (Fragment) n=1 Tax=Alpha... [more]
W7TM88_9STRA1.440e-2573.75Chaperonin Cpn60/TCP-1 n=3 Tax=Monodopsidaceae Tax... [more]
UPI00040B6BCB3.430e-2566.28chaperonin GroEL n=1 Tax=Cucumibacter marinus TaxI... [more]
A0A2W6YMS3_9HYPH7.680e-2565.79Molecular chaperone GroEL (Fragment) n=1 Tax=Chela... [more]
M4BZA5_HYAAE1.360e-2466.28Uncharacterized protein n=29 Tax=Peronosporaceae T... [more]
A0A6U3QVY4_9STRA1.790e-2470.59Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A2K3M1G2_TRIPR1.940e-2462.20Chaperonin CPN60-2 mitochondrial-like n=1 Tax=Trif... [more]
K3W969_GLOUD2.490e-2467.44Uncharacterized protein n=3 Tax=Pythiaceae TaxID=4... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8736contigM-pyrifera_M_contig8736:2940..5109 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size316
Cds size312
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816782.4623933-CDS-M-pyrifera_M_contig8736:2939..30751622816782.4623933-CDS-M-pyrifera_M_contig8736:2939..3075Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8736 2940..3075 +
1692278175.4673731-CDS-M-pyrifera_M_contig8736:2939..30751692278175.4673731-CDS-M-pyrifera_M_contig8736:2939..3075Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8736 2940..3075 +
1622816782.4734595-CDS-M-pyrifera_M_contig8736:4931..51071622816782.4734595-CDS-M-pyrifera_M_contig8736:4931..5107Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8736 4932..5107 +
1692278175.4776056-CDS-M-pyrifera_M_contig8736:4931..51071692278175.4776056-CDS-M-pyrifera_M_contig8736:4931..5107Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8736 4932..5107 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8736.20297.1prot_M-pyrifera_M_contig8736.20297.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8736 2940..5107 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8736.20297.1

>prot_M-pyrifera_M_contig8736.20297.1 ID=prot_M-pyrifera_M_contig8736.20297.1|Name=mRNA_M-pyrifera_M_contig8736.20297.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=104bp
RDERWCGRCGGGGRAAEERQPTVGVQCRIRRIRRHDRRRNHRPHQGCAHR
FGRCPERCRPPHDRGGHGNGPACRGGARWRPPLDGRHGRHGRHGRHGGHG
DVNC
back to top

mRNA from alignment at M-pyrifera_M_contig8736:2940..5109+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8736.20297.1 ID=mRNA_M-pyrifera_M_contig8736.20297.1|Name=mRNA_M-pyrifera_M_contig8736.20297.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2170bp|location=Sequence derived from alignment at M-pyrifera_M_contig8736:2940..5109+ (Macrocystis pyrifera P11B4 male)
CGCGATGAACGCTGGTGCGGAAGGTGCGGTGGTGGTGGGAGAGCTGCTGA
AGAGCGACAGCCCACAGTGGGGGTACAATGCCGCATCCGGCGAATACGGC
GACATGATCGCCGCAGGAATCATCGACCCCACCAAGGTATATATAGATAG
CACGGGTGTCGATGCCTCATGGCGTTTTGCCCCTCGCCCCCCCGCCCCCG
ATCAGCTTACGTGAGCGCGTAGGTAGACGTGGAGTGGAGGAGAAACGAAT
CGGTCGGTAGGCTGTTTGCCAAGTCGCGTGTAGACTTGGAAAAGTGCGGT
ACTGCATATCTTGTTGTATTAGTACTGATATTCTGTCTGTCAGTCTGTAA
TTGAGTAGCGCGGTCCAGAGCGCCCTGGCCCAACCTTGCCCCGTGGGTAG
GGAAGCTGGGTGCCGCAACCAGCAGAATACCGGATCTCGCGTCGCGGTGC
TTCGCGCCGCACCGTGGCCGTCGCTCTGAGCTGTCGACAATCCCGAGCCG
GTCCGTGAGGCGGCCCTTTATCCTGTCCGGTGTTGCTTCTGGGTTTATTA
TAGTTACAGGCATCTCACTGGTCCATTGAGGCATGAAGCCAGCGTTACTG
GCCCTAGTTCAGATTAGGAAACAGGGAGCCCATTGGCTGATTGCAACAAT
GCGGTGCGGCGGAATTACACCACCACCTTGCATCCATCATCACACATCAA
TCCGCAGCAGCGCAGAAGCAAAATCACCACCAGCAGCAACAAACAGCAGC
AGCCGCAGCCGCTGAAAATAGCAGCAGCAGCAGCTCCGGCAGCATTATTG
ACGGTTGACTGACTCTCACATGGACCCAGGGCGCAACGAGGGTTGCCCCA
CGGGACAACGTCGTGGTCCCGCCGCACCCGGGGATGATAATGTCCCATCC
CCGGATCATAAATCATTTCATACATCTACAACTCCAACAACCCGCGAAAC
GAAAAACAAGTTCCCCGGGGTCCATACCGCCCCGCAAGGTGTGGAAACGC
CAACCCCACTTGCTGATTTAGGGTTGGCAGGCTCTCAAGGAGGCAGCGTG
CGGCGAGAGTTACCCCATGGGACATCGTCGAGGTCCCGCCGCACCCAGGG
ATCATAAGATTCCATCCCCGGATCCGAAATCCTTCCGTACATGTCCATCT
CCAACAACCATGGAGACAACGACGGGCATTCACCGGGTCGCTGCCACTTC
GCACGGTGGTTCGTACATTTCTGTTCAGAGTAGTACATTGCAGCACACCA
CGAGTACTTTGAATAGCATGTGCTTACAGGCTACAGTAACTATGGCCAAC
GCAGGGCTAGCGCCACGGACGGAGCCGTGGCGGCACCTTCAGTATCTGTG
AATGTTAGGCTTTCGCACGGATACTTCTTGTTGTTTTGTTTCTGAAGGTT
GAAGCGACACCTGAGCTGAGATATATATTTTTTTCGTCAGACCTGATGTG
ACTTGCCGCTGGTAGGTGGTATCTCGCCGGTGGTCGTCTTCGTTGTCACA
TTTTGGACTGGCTGTAACGGTATCCCCTCTGATGCTGATGCCAAACTTCT
ACGGCAGTATGTACTGACGTACTGCTTGCGGTCTGGTGGTAGCCTTGAGC
GCGATTGTGGCATTGTCGAGAAATATTTCTCATGTCTGCCTCACTGCAGA
GTGTTTGCTCTTGACAGCGTAGTAATATTATATCGTACCAACTCAAGATT
GTTCTCGCTTTCTCGCGTACGAGTATTGGGCATGGCCGCCCATAGCCCCG
ATGTAGCCCCAGCGATCCTTCGTGTACCATGTGCCCCATCACGCCGTGTC
TGTCACGTTGGCTCTCTGAATGCAATTATACCGTACACACTTCCATACAT
ACACATGCACTGAGTGCAGCGGCTTCTGCTGTACGGCATATTTCGACGCA
TTTGTATATACGACGAGACCACAAAGGCTTGGAACGGTTCCGCCCTCACG
CTGACACCATCCAGTTTTCTCGCTTCCCGCTCCTCCACGCAGGTTGTGCG
CACCGCTTTGGTAGATGCCCAGAGCGTTGCCGCCCTCCTCATGACCGCGG
AGGCCATGGTAACGGACCTGCCTGCAGAGGAGGCGCCCGCTGGCGCCCCC
CCCTCGATGGGAGGCATGGGAGGCATGGGAGGCATGGGCGGCATGGGGGG
CATGGGGATGTAAACTGCGC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig8736:2940..5109+

>mRNA_M-pyrifera_M_contig8736.20297.1 ID=mRNA_M-pyrifera_M_contig8736.20297.1|Name=mRNA_M-pyrifera_M_contig8736.20297.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=624bp|location=Sequence derived from alignment at M-pyrifera_M_contig8736:2940..5109+ (Macrocystis pyrifera P11B4 male)
CGCGATGAACGCTGGTGCGGAAGGTGCGGTGGTGGTGGGAGAGCTGCTGA
AGAGCGACAGCCCACAGTGGGGGTACAATGCCGCATCCGGCGAATACGGC
GACATGATCGCCGCAGGAATCATCGACCCCACCAAGCGCGATGAACGCTG
GTGCGGAAGGTGCGGTGGTGGTGGGAGAGCTGCTGAAGAGCGACAGCCCA
CAGTGGGGGTACAATGCCGCATCCGGCGAATACGGCGACATGATCGCCGC
AGGAATCATCGACCCCACCAAGGTTGTGCGCACCGCTTTGGTAGATGCCC
AGAGCGTTGCCGCCCTCCTCATGACCGCGGAGGCCATGGTAACGGACCTG
CCTGCAGAGGAGGCGCCCGCTGGCGCCCCCCCCTCGATGGGAGGCATGGG
AGGCATGGGAGGCATGGGCGGCATGGGGGGCATGGGGATGTAAACTGCGT
TGTGCGCACCGCTTTGGTAGATGCCCAGAGCGTTGCCGCCCTCCTCATGA
CCGCGGAGGCCATGGTAACGGACCTGCCTGCAGAGGAGGCGCCCGCTGGC
GCCCCCCCCTCGATGGGAGGCATGGGAGGCATGGGAGGCATGGGCGGCAT
GGGGGGCATGGGGATGTAAACTGC
back to top