mRNA_M-pyrifera_M_contig8717.20270.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8717.20270.1
Unique NamemRNA_M-pyrifera_M_contig8717.20270.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8717.20270.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8717contigM-pyrifera_M_contig8717:6816..7852 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1037
Cds size585
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8717.20270.1prot_M-pyrifera_M_contig8717.20270.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8717 6865..7449 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816781.3685362-UTR-M-pyrifera_M_contig8717:6815..68641622816781.3685362-UTR-M-pyrifera_M_contig8717:6815..6864Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8717 6816..6864 +
1692278174.8368263-UTR-M-pyrifera_M_contig8717:6815..68641692278174.8368263-UTR-M-pyrifera_M_contig8717:6815..6864Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8717 6816..6864 +
1622816781.391812-UTR-M-pyrifera_M_contig8717:7449..78521622816781.391812-UTR-M-pyrifera_M_contig8717:7449..7852Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8717 7450..7852 +
1692278174.864598-UTR-M-pyrifera_M_contig8717:7449..78521692278174.864598-UTR-M-pyrifera_M_contig8717:7449..7852Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8717 7450..7852 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816781.381242-CDS-M-pyrifera_M_contig8717:6864..74491622816781.381242-CDS-M-pyrifera_M_contig8717:6864..7449Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8717 6865..7449 +
1692278174.8495073-CDS-M-pyrifera_M_contig8717:6864..74491692278174.8495073-CDS-M-pyrifera_M_contig8717:6864..7449Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8717 6865..7449 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8717.20270.1

>prot_M-pyrifera_M_contig8717.20270.1 ID=prot_M-pyrifera_M_contig8717.20270.1|Name=mRNA_M-pyrifera_M_contig8717.20270.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=195bp
MGRATTDRATSTPASPRHLADPLVPNSTGRTLPAPTILYLINSTLSLLVQ
CCHIRVHSAGKLPPRDDGILPHEFSLQLRCLRKNSNRLTSELMRITDSAV
GAAATAVAAATAAATAAATVSDRAVSTPAVCPSPSTSTIKAGVEQQPCWP
NNSLVGKTNSRSRELAPTARLSHLSFNWHSSSAGTPLNAARTIN*
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mRNA from alignment at M-pyrifera_M_contig8717:6816..7852+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8717.20270.1 ID=mRNA_M-pyrifera_M_contig8717.20270.1|Name=mRNA_M-pyrifera_M_contig8717.20270.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1037bp|location=Sequence derived from alignment at M-pyrifera_M_contig8717:6816..7852+ (Macrocystis pyrifera P11B4 male)
ATAATAAACGTGGTTAACGAATTCTGCGTCCCCAGGCTCAATCGCCGTCA
TGGGTCGGGCGACCACTGACCGCGCCACGAGCACACCGGCGTCCCCTCGC
CACCTTGCAGACCCGCTGGTGCCAAACTCCACGGGCAGAACACTGCCGGC
TCCGACAATTTTGTACCTCATCAACTCAACTCTCTCCCTGCTGGTACAAT
GCTGCCACATACGAGTACACTCCGCGGGGAAATTACCACCGCGTGATGAC
GGAATTTTGCCTCACGAATTCTCTCTACAGCTACGCTGTTTACGCAAAAA
CTCGAATAGGTTAACATCGGAACTCATGCGAATCACCGACAGCGCAGTAG
GTGCAGCAGCAACAGCAGTAGCAGCAGCAACAGCAGCAGCAACAGCAGCA
GCAACAGTGTCTGACCGAGCAGTGTCTACTCCTGCAGTCTGTCCGAGCCC
ATCCACTTCTACAATAAAAGCCGGGGTCGAGCAACAGCCTTGCTGGCCGA
ACAACAGCCTTGTTGGCAAAACAAACAGCCGTTCTCGCGAGTTGGCCCCT
ACCGCCCGCCTCTCTCACCTCTCTTTCAATTGGCACTCCTCCTCTGCCGG
GACGCCCCTCAACGCAGCTCGTACTATAAACTAGGTGCGAGATCCTACGG
AGGCGTTGCGGCCGAGGCAACCAAAATCTTCAGAGCTGGGGGTATAGAGT
CGGGGGAGGAAGGGGGCGAACTTCCGCACTTGACCCGGCCAAAGTTTCCT
AACTGTCGGCGTACTACTCGTGTTCTTGGCATTGGTGCTGGTACGGAGGA
GGGGGCATACGGACGGGGGGGCATACCATCGAAATCAGAACACATCATGG
ACCCAAAAAACCAGGCACCTCCCAACGTATTACATCCCATACTTAGTTCT
GATCACTATGTTTCCCTGAAACAGATGGGACACAGCCGAGGGGAAGCGAG
AACATTCAACGTGTCATATACAACAAGCAAAACAGCGGCGACACTGAAAA
CGCCTCACAGAAAGTACGGGCGAAGGTTTTCGATAAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8717:6816..7852+

>mRNA_M-pyrifera_M_contig8717.20270.1 ID=mRNA_M-pyrifera_M_contig8717.20270.1|Name=mRNA_M-pyrifera_M_contig8717.20270.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1170bp|location=Sequence derived from alignment at M-pyrifera_M_contig8717:6816..7852+ (Macrocystis pyrifera P11B4 male)
ATGGGTCGGGCGACCACTGACCGCGCCACGAGCACACCGGCGTCCCCTCG
CCACCTTGCAGACCCGCTGGTGCCAAACTCCACGGGCAGAACACTGCCGG
CTCCGACAATTTTGTACCTCATCAACTCAACTCTCTCCCTGCTGGTACAA
TGCTGCCACATACGAGTACACTCCGCGGGGAAATTACCACCGCGTGATGA
CGGAATTTTGCCTCACGAATTCTCTCTACAGCTACGCTGTTTACGCAAAA
ACTCGAATAGGTTAACATCGGAACTCATGCGAATCACCGACAGCGCAGTA
GGTGCAGCAGCAACAGCAGTAGCAGCAGCAACAGCAGCAGCAACAGCAGC
AGCAACAGTGTCTGACCGAGCAGTGTCTACTCCTGCAGTCTGTCCGAGCC
CATCCACTTCTACAATAAAAGCCGGGGTCGAGCAACAGCCTTGCTGGCCG
AACAACAGCCTTGTTGGCAAAACAAACAGCCGTTCTCGCGAGTTGGCCCC
TACCGCCCGCCTCTCTCACCTCTCTTTCAATTGGCACTCCTCCTCTGCCG
GGACGCCCCTCAACGCAGCTCGTACTATAAACTAGATGGGTCGGGCGACC
ACTGACCGCGCCACGAGCACACCGGCGTCCCCTCGCCACCTTGCAGACCC
GCTGGTGCCAAACTCCACGGGCAGAACACTGCCGGCTCCGACAATTTTGT
ACCTCATCAACTCAACTCTCTCCCTGCTGGTACAATGCTGCCACATACGA
GTACACTCCGCGGGGAAATTACCACCGCGTGATGACGGAATTTTGCCTCA
CGAATTCTCTCTACAGCTACGCTGTTTACGCAAAAACTCGAATAGGTTAA
CATCGGAACTCATGCGAATCACCGACAGCGCAGTAGGTGCAGCAGCAACA
GCAGTAGCAGCAGCAACAGCAGCAGCAACAGCAGCAGCAACAGTGTCTGA
CCGAGCAGTGTCTACTCCTGCAGTCTGTCCGAGCCCATCCACTTCTACAA
TAAAAGCCGGGGTCGAGCAACAGCCTTGCTGGCCGAACAACAGCCTTGTT
GGCAAAACAAACAGCCGTTCTCGCGAGTTGGCCCCTACCGCCCGCCTCTC
TCACCTCTCTTTCAATTGGCACTCCTCCTCTGCCGGGACGCCCCTCAACG
CAGCTCGTACTATAAACTAG
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