mRNA_M-pyrifera_M_contig87076.20247.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig87076.20247.1
Unique NamemRNA_M-pyrifera_M_contig87076.20247.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig87076.20247.1 vs. uniprot
Match: A0A139A2M1_GONPJ (p-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A139A2M1_GONPJ)

HSP 1 Score: 113 bits (282), Expect = 2.190e-27
Identity = 58/130 (44.62%), Postives = 82/130 (63.08%), Query Frame = 1
Query:    1 GEILHGEPGTGKTYLLTLMARLMAMASITETISVGEMEIGGLKGDMCNTPRAVLERPKDFPWLPCFLIIDEIDTLAPDRLRRNQEISESKQGAIGLLITLFKGGRQVPNLYLLGTTNRYDSMDDALLRRV 390
            G +L+G PGTGKT++   +  L    S+ E ++  E+  GGL GD     RA+ ER    PWLPC LI+DE+D +AP+RL   +  SE+KQ  +  L+T+F G R  PN++L+GTTN   +MD A LRR+
Sbjct:   79 GMLLYGPPGTGKTFIAKQLLSL-GFVSLNEPLAAAEIS-GGLVGDSEGMLRALFERGARLPWLPCCLILDEMDNIAPNRLGAKEGGSETKQSVLTTLLTIFGGARDQPNVFLIGTTNVKSNMDPAFLRRM 206          
BLAST of mRNA_M-pyrifera_M_contig87076.20247.1 vs. uniprot
Match: A0A819QFY1_9BILA (Hypothetical protein n=5 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A819QFY1_9BILA)

HSP 1 Score: 91.7 bits (226), Expect = 5.740e-19
Identity = 51/130 (39.23%), Postives = 79/130 (60.77%), Query Frame = 1
Query:    1 GEILHGEPGTGKTYLLTLMARLMAMASITETISVGEMEIGGLKGDMCNTPRAVLERPKDFPWLPCFLIIDEIDTLAPDRLRRNQEISESKQGAIGLLITLFKGGRQVPNLYLLGTTNRYDSMDDALLRRV 390
            G ILHG PGTGK+ +L+ +A+ M +  ++  ++ GE+    L G+      A+  R    P+  C + IDEID+LAP   +R+++ SE K   I +L++L +G + VPNL +L  TNR   MD+A LRR+
Sbjct:  438 GLILHGPPGTGKSDILSKLAKKMGIVMVSAPLAAGELN-RPLVGESERILIALCSRCYQIPYAMCCVSIDEIDSLAP---KRDEDSSEGKVDKISVLLSLIEGIKDVPNLMILSATNRLHMMDEAFLRRM 563          
BLAST of mRNA_M-pyrifera_M_contig87076.20247.1 vs. uniprot
Match: A0A819KIN3_9BILA (Hypothetical protein n=1 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A819KIN3_9BILA)

HSP 1 Score: 91.3 bits (225), Expect = 8.050e-19
Identity = 51/130 (39.23%), Postives = 79/130 (60.77%), Query Frame = 1
Query:    1 GEILHGEPGTGKTYLLTLMARLMAMASITETISVGEMEIGGLKGDMCNTPRAVLERPKDFPWLPCFLIIDEIDTLAPDRLRRNQEISESKQGAIGLLITLFKGGRQVPNLYLLGTTNRYDSMDDALLRRV 390
            G ILHG PGTGK+ +L+ +A+ M +  ++  ++ GE+    L G+      A+  R    P+  C + IDEID+LAP   +R+++ SE K   I +L++L +G + VPNL +L  TNR   MD+A LRR+
Sbjct:  438 GLILHGPPGTGKSDILSKLAKKMGIVMVSPPLAAGELN-RPLVGESERILIALCSRCYKIPYAMCCVSIDEIDSLAP---KRDEDSSEGKVDKISVLLSLIEGIKDVPNLMILSATNRLHMMDEAFLRRM 563          
BLAST of mRNA_M-pyrifera_M_contig87076.20247.1 vs. uniprot
Match: A0A818P427_9BILA (Hypothetical protein n=1 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A818P427_9BILA)

HSP 1 Score: 90.9 bits (224), Expect = 1.080e-18
Identity = 51/130 (39.23%), Postives = 78/130 (60.00%), Query Frame = 1
Query:    1 GEILHGEPGTGKTYLLTLMARLMAMASITETISVGEMEIGGLKGDMCNTPRAVLERPKDFPWLPCFLIIDEIDTLAPDRLRRNQEISESKQGAIGLLITLFKGGRQVPNLYLLGTTNRYDSMDDALLRRV 390
            G +L G PGTGK+ +L+ +A+ M +  I+  ++ GE+    L G+      A+  R    P+  C + IDEID+LAP   +RNQ+ SE K   I +L++L +G + +PNL +L  TNR   MD+A LRR+
Sbjct:  589 GLLLFGPPGTGKSDILSKLAKKMGIVMISPPLAAGELN-RPLVGESERIIIALCSRCDQIPYAMCCVSIDEIDSLAP---KRNQDSSEGKVDKISVLLSLIEGIKDIPNLMILSATNRLHMMDEAFLRRM 714          
BLAST of mRNA_M-pyrifera_M_contig87076.20247.1 vs. uniprot
Match: A0A815N7D7_ADIRI (Hypothetical protein n=1 Tax=Adineta ricciae TaxID=249248 RepID=A0A815N7D7_ADIRI)

HSP 1 Score: 86.7 bits (213), Expect = 3.250e-17
Identity = 51/130 (39.23%), Postives = 72/130 (55.38%), Query Frame = 1
Query:    1 GEILHGEPGTGKTYLLTLMARLMAMASITETISVGEMEIGGLKGDMCNTPRAVLERPKDFPWLPCFLIIDEIDTLAPDRLRRNQEISESKQGAIGLLITLFKGGRQVPNLYLLGTTNRYDSMDDALLRRV 390
            G +L G PGTGK+ +L L + L     IT  +S GE+    L G+       ++ R    P+L C LIIDEID L P   +R+    + K   I +L++  +G + +PNL LLG TNR   MD+A LRR+
Sbjct:  491 GLLLFGPPGTGKSEILKLASVLAGFTIITPPLSAGELN-RPLVGETERLLVDIMSRANTIPYLICALIIDEIDGLVP---KRDNNAHQGKVDGISVLLSHIEGVKNIPNLILLGATNRKTMMDEAFLRRM 616          
BLAST of mRNA_M-pyrifera_M_contig87076.20247.1 vs. uniprot
Match: A0A820M6E0_9BILA (Hypothetical protein n=3 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A820M6E0_9BILA)

HSP 1 Score: 80.5 bits (197), Expect = 4.560e-15
Identity = 48/133 (36.09%), Postives = 73/133 (54.89%), Query Frame = 1
Query:    1 GEILHGEPGTGKTYLLTLMARLMAMASITETISVGEMEIGGLKGDMCNTPRAVLE---RPKDFPWLPCFLIIDEIDTLAPDRLRRNQEISESKQGAIGLLITLFKGGRQVPNLYLLGTTNRYDSMDDALLRRV 390
            G +L+G PGTGK+ LL   A    +   T  ++ GE+     +  +  T R +++   R    P+L C + IDEID L P R    Q+   SK   I +L++  +G + +PNL +LG TNR + MD+A LRR+
Sbjct:  501 GLLLYGPPGTGKSELLKRAATFAGITMTTTALAAGELN----RPYVGETERLLVDIMYRSNTIPYLICAMTIDEIDGLVPKRTNNAQQ---SKVDGISVLLSHIEGVKNIPNLIVLGATNRRNMMDEAFLRRM 626          
BLAST of mRNA_M-pyrifera_M_contig87076.20247.1 vs. uniprot
Match: A0A819EEA4_9BILA (Hypothetical protein n=2 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A819EEA4_9BILA)

HSP 1 Score: 80.5 bits (197), Expect = 4.900e-15
Identity = 49/133 (36.84%), Postives = 73/133 (54.89%), Query Frame = 1
Query:    1 GEILHGEPGTGKTYLLTLMARLMAMASITETISVGEMEIGGLKGDMCNTPRAVLE---RPKDFPWLPCFLIIDEIDTLAPDRLRRNQEISESKQGAIGLLITLFKGGRQVPNLYLLGTTNRYDSMDDALLRRV 390
            G +L+G PGTGK+ LL   A    +   T  ++ GE+     +  +  T R +++   R    P+L C L IDEID L P R    Q+   SK   I +L++  +G + +PNL +LG TNR + MD+A LRR+
Sbjct:  501 GLLLYGPPGTGKSELLKRAAIFAGITMTTTALAAGELN----RPYVGETERLLVDIMYRSNTIPYLICALTIDEIDGLVPKRTNNAQQ---SKVDGISVLLSHIEGVKNIPNLIVLGATNRRNMMDEAFLRRM 626          
BLAST of mRNA_M-pyrifera_M_contig87076.20247.1 vs. uniprot
Match: A0A815KJ55_9BILA (Hypothetical protein n=1 Tax=Rotaria sordida TaxID=392033 RepID=A0A815KJ55_9BILA)

HSP 1 Score: 79.7 bits (195), Expect = 7.620e-15
Identity = 46/130 (35.38%), Postives = 73/130 (56.15%), Query Frame = 1
Query:    1 GEILHGEPGTGKTYLLTLMARLMAMASITETISVGEMEIGGLKGDMCNTPRAVLERPKDFPWLPCFLIIDEIDTLAPDRLRRNQEISESKQGAIGLLITLFKGGRQVPNLYLLGTTNRYDSMDDALLRRV 390
            G +L+G PGTGK+ LL   A    + + T  ++ GE+    + G+       ++ R     +L C +IIDEID L P   +R+    +SK   I +L++  +G + +PNL +LG TNR + MD+A LRR+
Sbjct:   54 GLLLYGPPGTGKSELLKRAAVFAGITTTTTPLAAGELNRPHV-GETEKLLVDIMYRSNPISYLICAMIIDEIDGLVP---KRDNNAQQSKVDGISVLLSHIEGVKNIPNLIVLGATNRRNMMDEAFLRRM 179          
BLAST of mRNA_M-pyrifera_M_contig87076.20247.1 vs. uniprot
Match: A0A817NJZ0_9BILA (Hypothetical protein n=1 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A817NJZ0_9BILA)

HSP 1 Score: 79.7 bits (195), Expect = 8.150e-15
Identity = 46/130 (35.38%), Postives = 73/130 (56.15%), Query Frame = 1
Query:    1 GEILHGEPGTGKTYLLTLMARLMAMASITETISVGEMEIGGLKGDMCNTPRAVLERPKDFPWLPCFLIIDEIDTLAPDRLRRNQEISESKQGAIGLLITLFKGGRQVPNLYLLGTTNRYDSMDDALLRRV 390
            G +L+G PGTGK+ LL   A    + + T  ++ GE+    + G+       ++ R     +L C +IIDEID L P   +R+    +SK   I +L++  +G + +PNL +LG TNR + MD+A LRR+
Sbjct:  233 GLLLYGPPGTGKSELLKRAAVFAGITTTTTPLAAGELNRPHV-GETEKLLVDIMYRSNPISYLICAMIIDEIDGLVP---KRDNNAQQSKVDGISVLLSHIEGVKNIPNLIVLGATNRRNMMDEAFLRRM 358          
BLAST of mRNA_M-pyrifera_M_contig87076.20247.1 vs. uniprot
Match: A0A819DL21_9BILA (Hypothetical protein n=1 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A819DL21_9BILA)

HSP 1 Score: 79.7 bits (195), Expect = 8.170e-15
Identity = 46/130 (35.38%), Postives = 71/130 (54.62%), Query Frame = 1
Query:    1 GEILHGEPGTGKTYLLTLMARLMAMASITETISVGEMEIGGLKGDMCNTPRAVLERPKDFPWLPCFLIIDEIDTLAPDRLRRNQEISESKQGAIGLLITLFKGGRQVPNLYLLGTTNRYDSMDDALLRRV 390
            G +L+G PGTGK+ LL   A    +   T  ++ GE+    + G+       ++ R    P+L C + IDEID L P R    Q+   SK   I +L++  +G + +PN+ +LG TNR + MD+A LRR+
Sbjct:  255 GLLLYGPPGTGKSELLKRTAIFAGITMTTTALAAGELNRPYV-GETERLLVDIMSRANTIPYLICAMTIDEIDGLVPKRTNNAQQ---SKVDGISVLLSHIEGVKNIPNIIVLGATNRKNMMDEAFLRRM 380          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig87076.20247.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A139A2M1_GONPJ2.190e-2744.62p-loop containing nucleoside triphosphate hydrolas... [more]
A0A819QFY1_9BILA5.740e-1939.23Hypothetical protein n=5 Tax=Rotaria sp. Silwood2 ... [more]
A0A819KIN3_9BILA8.050e-1939.23Hypothetical protein n=1 Tax=Rotaria sp. Silwood2 ... [more]
A0A818P427_9BILA1.080e-1839.23Hypothetical protein n=1 Tax=Rotaria sp. Silwood1 ... [more]
A0A815N7D7_ADIRI3.250e-1739.23Hypothetical protein n=1 Tax=Adineta ricciae TaxID... [more]
A0A820M6E0_9BILA4.560e-1536.09Hypothetical protein n=3 Tax=Rotaria sp. Silwood2 ... [more]
A0A819EEA4_9BILA4.900e-1536.84Hypothetical protein n=2 Tax=Rotaria sp. Silwood1 ... [more]
A0A815KJ55_9BILA7.620e-1535.38Hypothetical protein n=1 Tax=Rotaria sordida TaxID... [more]
A0A817NJZ0_9BILA8.150e-1535.38Hypothetical protein n=1 Tax=Rotaria sp. Silwood2 ... [more]
A0A819DL21_9BILA8.170e-1535.38Hypothetical protein n=1 Tax=Rotaria sp. Silwood1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig87076contigM-pyrifera_M_contig87076:207..596 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score72.0
Seed ortholog evalue2.3e-10
Seed eggNOG ortholog65093.PCC7418_1535
KEGG koko:K13525
KEGG TC3.A.16.1
KEGG Pathwayko04141,ko05134,map04141,map05134
KEGG ModuleM00400,M00403
Hectar predicted targeting categoryother localisation
EggNOG free text desc.PFAM ATPase family associated with various cellular activities (AAA)
EggNOG OGs1G1TR@1117,COG1222@1,COG1222@2
COG Functional cat.O
Best tax levelCyanobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko04131,ko04147
Exons1
Model size390
Cds size390
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816780.2058184-CDS-M-pyrifera_M_contig87076:206..5961622816780.2058184-CDS-M-pyrifera_M_contig87076:206..596Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87076 207..596 +
1692278174.237942-CDS-M-pyrifera_M_contig87076:206..5961692278174.237942-CDS-M-pyrifera_M_contig87076:206..596Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87076 207..596 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig87076.20247.1prot_M-pyrifera_M_contig87076.20247.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig87076 207..596 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig87076.20247.1

>prot_M-pyrifera_M_contig87076.20247.1 ID=prot_M-pyrifera_M_contig87076.20247.1|Name=mRNA_M-pyrifera_M_contig87076.20247.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=130bp
GEILHGEPGTGKTYLLTLMARLMAMASITETISVGEMEIGGLKGDMCNTP
RAVLERPKDFPWLPCFLIIDEIDTLAPDRLRRNQEISESKQGAIGLLITL
FKGGRQVPNLYLLGTTNRYDSMDDALLRRV
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mRNA from alignment at M-pyrifera_M_contig87076:207..596+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig87076.20247.1 ID=mRNA_M-pyrifera_M_contig87076.20247.1|Name=mRNA_M-pyrifera_M_contig87076.20247.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=390bp|location=Sequence derived from alignment at M-pyrifera_M_contig87076:207..596+ (Macrocystis pyrifera P11B4 male)
GGAGAGATCCTCCACGGCGAACCGGGCACGGGCAAGACCTACCTGCTCAC GCTCATGGCGCGCCTCATGGCGATGGCCTCCATCACCGAGACGATCAGTG TGGGCGAGATGGAGATCGGAGGCCTGAAGGGCGACATGTGCAACACCCCC CGTGCCGTTCTGGAGCGGCCCAAGGACTTTCCCTGGCTGCCGTGCTTCCT CATCATCGACGAGATCGACACGCTGGCGCCTGACCGCCTGCGGCGCAACC AAGAGATCAGCGAGTCGAAGCAGGGCGCCATTGGCCTGCTGATCACGCTC TTCAAGGGCGGCAGACAAGTACCGAACCTCTACCTCCTTGGCACCACCAA CAGATACGACTCCATGGACGACGCCCTCCTGCGCCGCGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig87076:207..596+

>mRNA_M-pyrifera_M_contig87076.20247.1 ID=mRNA_M-pyrifera_M_contig87076.20247.1|Name=mRNA_M-pyrifera_M_contig87076.20247.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=780bp|location=Sequence derived from alignment at M-pyrifera_M_contig87076:207..596+ (Macrocystis pyrifera P11B4 male)
GGAGAGATCCTCCACGGCGAACCGGGCACGGGCAAGACCTACCTGCTCAC
GCTCATGGCGCGCCTCATGGCGATGGCCTCCATCACCGAGACGATCAGTG
TGGGCGAGATGGAGATCGGAGGCCTGAAGGGCGACATGTGCAACACCCCC
CGTGCCGTTCTGGAGCGGCCCAAGGACTTTCCCTGGCTGCCGTGCTTCCT
CATCATCGACGAGATCGACACGCTGGCGCCTGACCGCCTGCGGCGCAACC
AAGAGATCAGCGAGTCGAAGCAGGGCGCCATTGGCCTGCTGATCACGCTC
TTCAAGGGCGGCAGACAAGTACCGAACCTCTACCTCCTTGGCACCACCAA
CAGATACGACTCCATGGACGACGCCCTCCTGCGCCGCGTGGGAGAGATCC
TCCACGGCGAACCGGGCACGGGCAAGACCTACCTGCTCACGCTCATGGCG
CGCCTCATGGCGATGGCCTCCATCACCGAGACGATCAGTGTGGGCGAGAT
GGAGATCGGAGGCCTGAAGGGCGACATGTGCAACACCCCCCGTGCCGTTC
TGGAGCGGCCCAAGGACTTTCCCTGGCTGCCGTGCTTCCTCATCATCGAC
GAGATCGACACGCTGGCGCCTGACCGCCTGCGGCGCAACCAAGAGATCAG
CGAGTCGAAGCAGGGCGCCATTGGCCTGCTGATCACGCTCTTCAAGGGCG
GCAGACAAGTACCGAACCTCTACCTCCTTGGCACCACCAACAGATACGAC
TCCATGGACGACGCCCTCCTGCGCCGCGTG
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