mRNA_M-pyrifera_M_contig87025.20235.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig87025.20235.1
Unique NamemRNA_M-pyrifera_M_contig87025.20235.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig87025.20235.1 vs. uniprot
Match: UPI001F148567 (DEAD/DEAH box helicase n=1 Tax=Candidatus Vondammii sp. HM_W22 TaxID=2687299 RepID=UPI001F148567)

HSP 1 Score: 329 bits (844), Expect = 2.970e-106
Identity = 163/265 (61.51%), Postives = 213/265 (80.38%), Query Frame = 1 
Query:    1 GRVIDHLERGSLDLSSVRFFVLDEADEMLKMGFVEEVDKVLARAPEQRQIALFSATMPREVQRLAETYLHEPELVKFEERTQIAETIRQRYLVVKGNLKLDAVTRVLETEDFDAMLIFVRTKNDTVELADKLAARGHSCAALNGDMPQRARERTVDRLKDGRLDIIVATDVAARGLDVQRISHVLNYDLPTGIEAYTHRIGRTGRAGREGHAIVFVKPNERRALGSIERASGRKIEAYSVPTTDEVNASRIDRFKERIKENLGDG 795
            GRV+DH+ +G+L L++++  VLDEADEML+MGF+++V+ +L + PE+RQ+ALFSATMPR+++R+A  YLH+P+ +  + RT  AETIRQRY +V G  KLDA+TR+LE E FDA+L+FVRTK  TVELA +L ARG+S AALNGDMPQ+ RE+ +DRLK G LDI+VATDVAARGLDV+RISHV+NYD+P+  EAY HRIGRTGRAGREG AI+FV P ERR L +IE+A+ +KIE   +P+T+ VN  RI  FK+ I + L  G
Sbjct:  137 GRVMDHMRKGTLKLNNLQALVLDEADEMLRMGFIDDVEWILEQTPEKRQMALFSATMPRQIERIARRYLHDPQEISIKTRTATAETIRQRYWLVSGLHKLDALTRILEVESFDALLMFVRTKIATVELAQRLEARGYSAAALNGDMPQKQREQMIDRLKKGSLDILVATDVAARGLDVERISHVVNYDIPSDTEAYIHRIGRTGRAGREGDAILFVAPRERRMLSAIEKATRKKIEPLELPSTEVVNNKRIADFKQSISDTLASG 401
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BLAST of mRNA_M-pyrifera_M_contig87025.20235.1 vs. uniprot
Match: A0A2S1JP22_9GAMM (ATP-dependent RNA helicase DeaD n=6 Tax=Microbulbifer TaxID=48073 RepID=A0A2S1JP22_9GAMM)

HSP 1 Score: 328 bits (841), Expect = 6.380e-106
Identity = 172/277 (62.09%), Postives = 214/277 (77.26%), Query Frame = 1 
Query:    1 GRVIDHLERGSLDLSSVRFFVLDEADEMLKMGFVEEVDKVLARAPEQRQIALFSATMPREVQRLAETYLHEPELVKFEERTQIAETIRQRYLVVKGNLKLDAVTRVLETEDFDAMLIFVRTKNDTVELADKLAARGHSCAALNGDMPQRARERTVDRLKDGRLDIIVATDVAARGLDVQRISHVLNYDLPTGIEAYTHRIGRTGRAGREGHAIVFVKPNERRALGSIERASGRKIEAYSVPTTDEVNASRIDRFKERIKENLGDGTERELHARVVTE 831
            GRV+DH+ RGSLDLS++R  VLDEADEML+MGF+++V  VL + PE+RQIALFSATMP+E+ R+A  +L EP  VK   +T+ AETIRQRY  V G  KLDA+TR+LE E  DA +IFVRTKN TVELADKLAARG + AALNGDM Q  RE  +D+LK+G+LDI+VATDVAARGLDV+RISHV+NYD+P   EAY HRIGRTGRAGREG AI+FV P ERR L  IE+A+ + IE   +P+ D VN++R+ RF+ERI   L   T+   + ++V E
Sbjct:  136 GRVMDHMRRGSLDLSNLRTLVLDEADEMLRMGFIDDVQWVLEQIPEERQIALFSATMPKEIARIAREHLDEPVEVKIRVKTETAETIRQRYWPVGGLHKLDALTRILEAEPVDATIIFVRTKNSTVELADKLAARGFASAALNGDMAQNLREAVIDKLKNGKLDIVVATDVAARGLDVKRISHVINYDIPYDTEAYIHRIGRTGRAGREGDAILFVAPRERRMLRVIEKATKKPIEKLDLPSADAVNSARMQRFRERITATLEGQTDLAPYRQLVEE 412
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BLAST of mRNA_M-pyrifera_M_contig87025.20235.1 vs. uniprot
Match: A0A7C1XII3_9GAMM (ATP-dependent RNA helicase DeaD n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A7C1XII3_9GAMM)

HSP 1 Score: 327 bits (838), Expect = 1.700e-105
Identity = 163/278 (58.63%), Postives = 218/278 (78.42%), Query Frame = 1 
Query:    1 GRVIDHLERGSLDLSSVRFFVLDEADEMLKMGFVEEVDKVLARAPEQRQIALFSATMPREVQRLAETYLHEPELVKFEERTQIAETIRQRYLVVKGNLKLDAVTRVLETEDFDAMLIFVRTKNDTVELADKLAARGHSCAALNGDMPQRARERTVDRLKDGRLDIIVATDVAARGLDVQRISHVLNYDLPTGIEAYTHRIGRTGRAGREGHAIVFVKPNERRALGSIERASGRKIEAYSVPTTDEVNASRIDRFKERIKENLGDGTERELHARVVTEL 834
            GRV+DH+ RG+L L  ++  VLDEADEML+MGF+++V  VL + P  RQIALFSATMP+EV+++A+ +L++P  +K ++RT  AETI QRY  V G  KLDA+TR+LE E+FDAML+FVRTK  T+ELA+KL ARGH+  ALNGD+PQ+ RERTVDRLK G++DI+VATDV ARGLDV+RISHVLNYD+P  +EAY HRIGRTGRAG +G AI+FV P E+R L +IE+   + IE   +PT  ++N  R+ RFK++I++ L + T+ EL  +++TEL
Sbjct:  136 GRVMDHMRRGTLKLKGLQALVLDEADEMLRMGFIDDVKWVLEQTPPTRQIALFSATMPKEVRKVAQQHLNKPIEIKVQQRTATAETIHQRYWPVSGLHKLDALTRILEVENFDAMLVFVRTKTATIELAEKLEARGHAAEALNGDIPQKLRERTVDRLKKGQIDILVATDVVARGLDVKRISHVLNYDIPYDVEAYIHRIGRTGRAGAKGEAILFVAPREKRLLRAIEKTIRQPIEPMKMPTAADINVQRVSRFKQKIRDALAENTKNELFYQMLTEL 413
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BLAST of mRNA_M-pyrifera_M_contig87025.20235.1 vs. uniprot
Match: A0A148NAI9_9GAMM (ATP-dependent RNA helicase DeaD n=1 Tax=Methylothermaceae bacteria B42 TaxID=1798802 RepID=A0A148NAI9_9GAMM)

HSP 1 Score: 325 bits (834), Expect = 2.230e-105
Identity = 156/262 (59.54%), Postives = 212/262 (80.92%), Query Frame = 1 
Query:    1 GRVIDHLERGSLDLSSVRFFVLDEADEMLKMGFVEEVDKVLARAPEQRQIALFSATMPREVQRLAETYLHEPELVKFEERTQIAETIRQRYLVVKGNLKLDAVTRVLETEDFDAMLIFVRTKNDTVELADKLAARGHSCAALNGDMPQRARERTVDRLKDGRLDIIVATDVAARGLDVQRISHVLNYDLPTGIEAYTHRIGRTGRAGREGHAIVFVKPNERRALGSIERASGRKIEAYSVPTTDEVNASRIDRFKERIKENL 786
            GR++DH+ RG+L+L  ++  VLDEADEML+MGFV++VD +L + P +RQ+ALFSATMP  ++R+A+ +L EPE +K + +T  AETIRQRY ++  + KLDA+TR+LE EDF+A ++FVRTKN TVELA+KLAARG++ A LNGD+PQ  R+RTV++LK+G+LD++VATDVAARGLDVQRISHV+NYD+P   E+Y HRIGRTGRA R G AI+FV P E+R L +IERA+ +K+E   +PTT+ +N  R+ RFK+RI + L
Sbjct:  136 GRIMDHMRRGTLNLDGLKTLVLDEADEMLRMGFVDDVDWILEQTPAERQVALFSATMPAPIRRIAQQHLREPEEIKIKVKTSTAETIRQRYCLINPHAKLDALTRILEAEDFEATILFVRTKNATVELAEKLAARGYAAAPLNGDIPQHQRQRTVEQLKNGKLDVLVATDVAARGLDVQRISHVINYDIPLDTESYVHRIGRTGRAXRTGEAILFVTPREKRLLNAIERATKQKVELMKLPTTEVINHQRMARFKQRITDTL 397
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BLAST of mRNA_M-pyrifera_M_contig87025.20235.1 vs. uniprot
Match: A0A1V8M526_9GAMM (ATP-dependent RNA helicase DeaD n=12 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A1V8M526_9GAMM)

HSP 1 Score: 327 bits (837), Expect = 2.910e-105
Identity = 160/262 (61.07%), Postives = 210/262 (80.15%), Query Frame = 1 
Query:    1 GRVIDHLERGSLDLSSVRFFVLDEADEMLKMGFVEEVDKVLARAPEQRQIALFSATMPREVQRLAETYLHEPELVKFEERTQIAETIRQRYLVVKGNLKLDAVTRVLETEDFDAMLIFVRTKNDTVELADKLAARGHSCAALNGDMPQRARERTVDRLKDGRLDIIVATDVAARGLDVQRISHVLNYDLPTGIEAYTHRIGRTGRAGREGHAIVFVKPNERRALGSIERASGRKIEAYSVPTTDEVNASRIDRFKERIKENL 786
            GRV+DH+ +G+L L ++   VLDEADEML+MGF+++V+ VL + P+QRQIALFSATMP  ++R+A+ YLH PE V  + +T  AETIRQRY  V G  KLDA+TR+LE E FD M+IFVRTKN T+ELA+KL ARG S AA+NGD+ Q  RE+T+++LK+G+LDI+VATDVAARGLDVQRISHV+NYD+P   EAY HRIGRTGRAGR G AI+FV P E+R LG+IERA+ ++IE   +P+T+ +N  R++RFK++I + L
Sbjct:  137 GRVMDHMRKGTLKLENLTCLVLDEADEMLRMGFIDDVEWVLEQLPKQRQIALFSATMPTAIRRIADNYLHNPEHVTIKVKTTTAETIRQRYWTVSGMHKLDALTRILEAETFDGMIIFVRTKNSTIELAEKLEARGFSAAAINGDLAQNQREKTIEKLKNGKLDILVATDVAARGLDVQRISHVINYDIPYDTEAYVHRIGRTGRAGRTGDAILFVAPREKRMLGAIERATRQRIELMEMPSTEMINDKRVNRFKQQITDTL 398
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BLAST of mRNA_M-pyrifera_M_contig87025.20235.1 vs. uniprot
Match: A0A7C1U103_9GAMM (ATP-dependent RNA helicase DeaD n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A7C1U103_9GAMM)

HSP 1 Score: 326 bits (836), Expect = 5.400e-105
Identity = 162/262 (61.83%), Postives = 208/262 (79.39%), Query Frame = 1 
Query:    1 GRVIDHLERGSLDLSSVRFFVLDEADEMLKMGFVEEVDKVLARAPEQRQIALFSATMPREVQRLAETYLHEPELVKFEERTQIAETIRQRYLVVKGNLKLDAVTRVLETEDFDAMLIFVRTKNDTVELADKLAARGHSCAALNGDMPQRARERTVDRLKDGRLDIIVATDVAARGLDVQRISHVLNYDLPTGIEAYTHRIGRTGRAGREGHAIVFVKPNERRALGSIERASGRKIEAYSVPTTDEVNASRIDRFKERIKENL 786
            GRV+DH+ RG+LDLS ++  VLDEADEML+MGF+++V+ +L + P++RQIALFSATMP  V+++AE +L+ P +VK   +T    TIRQRY  V G  KLDA+TR+LE+EDFD M++FVRTK  TVELADKLAARG++  ALNGD+PQ  RER + RLK G+LDI+VATDV ARGLDV+RISHV+NYD+P   E+Y HRIGRTGRAGR+G AI+FV P ERR L +IERA+ + IEA  +PT  ++N  RI+RFK+RI E L
Sbjct:  134 GRVMDHIRRGTLDLSGLQALVLDEADEMLRMGFIDDVEWILEQTPKKRQIALFSATMPAVVRKVAERHLNNPVVVKIATKTTTVTTIRQRYWAVSGLHKLDALTRILESEDFDGMIVFVRTKTATVELADKLAARGYASTALNGDIPQNNRERIIQRLKKGQLDILVATDVVARGLDVERISHVINYDVPHDTESYVHRIGRTGRAGRKGDAILFVAPRERRMLSAIERATRQSIEAMQMPTASDINVQRIERFKQRISETL 395
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BLAST of mRNA_M-pyrifera_M_contig87025.20235.1 vs. uniprot
Match: A0A1Q2M2K6_9GAMM (ATP-dependent RNA helicase DeaD n=8 Tax=Microbulbifer TaxID=48073 RepID=A0A1Q2M2K6_9GAMM)

HSP 1 Score: 326 bits (836), Expect = 8.060e-105
Identity = 166/263 (63.12%), Postives = 210/263 (79.85%), Query Frame = 1 
Query:    1 GRVIDHLERGSLDLSSVRFFVLDEADEMLKMGFVEEVDKVLARAPEQRQIALFSATMPREVQRLAETYLHEPELVKFEERTQIAETIRQRYLVVKGNLKLDAVTRVLETEDFDAMLIFVRTKNDTVELADKLAARGHSCAALNGDMPQRARERTVDRLKDGRLDIIVATDVAARGLDVQRISHVLNYDLPTGIEAYTHRIGRTGRAGREGHAIVFVKPNERRALGSIERASGRKIEAYSVPTTDEVNASRIDRFKERIKENLG 789
            GRV+DH+ +G+LDLS+++  VLDEADEML+MGF+++V+ VL + PE+RQIALFSATMPRE+ ++A  +L  P  VK + +T+ AETIRQRY  V G  KLDA+TR+LE E  DA +IFVRTKN TVELADKLAARG + +ALNGDM Q  RE+ +D+LK G+LDI+VATDVAARGLDV+RISHV+NYD+P   EAY HRIGRTGRAGREG AI+FV P ERR L  IERA+ + IE   +PT   VNASR+++F++RI + LG
Sbjct:  136 GRVMDHMRKGTLDLSNLKTLVLDEADEMLRMGFIDDVEWVLEQIPEERQIALFSATMPREIAKIARDHLDNPVDVKIKVKTETAETIRQRYWPVGGLHKLDALTRILEAEPVDATIIFVRTKNTTVELADKLAARGFASSALNGDMAQNLREQVIDKLKAGKLDIVVATDVAARGLDVKRISHVINYDIPYDTEAYIHRIGRTGRAGREGDAILFVAPRERRMLRVIERATKKSIERLELPTAKAVNASRMEKFRQRISDTLG 398
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BLAST of mRNA_M-pyrifera_M_contig87025.20235.1 vs. uniprot
Match: A0A1C9W7Y0_9GAMM (ATP-dependent RNA helicase DeaD n=3 Tax=Microbulbifer TaxID=48073 RepID=A0A1C9W7Y0_9GAMM)

HSP 1 Score: 325 bits (834), Expect = 8.670e-105
Identity = 167/262 (63.74%), Postives = 207/262 (79.01%), Query Frame = 1 
Query:    1 GRVIDHLERGSLDLSSVRFFVLDEADEMLKMGFVEEVDKVLARAPEQRQIALFSATMPREVQRLAETYLHEPELVKFEERTQIAETIRQRYLVVKGNLKLDAVTRVLETEDFDAMLIFVRTKNDTVELADKLAARGHSCAALNGDMPQRARERTVDRLKDGRLDIIVATDVAARGLDVQRISHVLNYDLPTGIEAYTHRIGRTGRAGREGHAIVFVKPNERRALGSIERASGRKIEAYSVPTTDEVNASRIDRFKERIKENL 786
            GRV+DH+ RGSLDLS+++  VLDEADEML+MGF+++V  VL + PE+RQIALFSATMPRE+ R+A  +L +P  VK + +T+ AETIRQRY  V G  KLDA+TR+LE E  DA +IFVRTKN TVELADKLAARG + AALNGDM Q  RE+ +D+LK G+LDI+VATDVAARGLDV+RISHV+NYD+P   EAY HRIGRTGRAGREG AI+FV P ERR L  IE+A+ + IE   +P+   VN++R+ RF+ERI   L
Sbjct:  136 GRVMDHMRRGSLDLSNLKTLVLDEADEMLRMGFIDDVQWVLEQLPEERQIALFSATMPREIARIARDHLQDPVEVKIKVKTETAETIRQRYWPVGGLHKLDALTRILEAEPVDATIIFVRTKNSTVELADKLAARGFASAALNGDMAQNLREQVIDKLKSGKLDIVVATDVAARGLDVKRISHVINYDIPYDTEAYIHRIGRTGRAGREGDAILFVAPRERRMLRIIEKATKKPIEQLELPSAKAVNSARMQRFRERITSTL 397
[Close]
BLAST of mRNA_M-pyrifera_M_contig87025.20235.1 vs. uniprot
Match: A0A346N331_9GAMM (ATP-dependent RNA helicase DeaD n=1 Tax=Solimonas sp. K1W22B-7 TaxID=2303331 RepID=A0A346N331_9GAMM)

HSP 1 Score: 328 bits (840), Expect = 9.840e-105
Identity = 162/263 (61.60%), Postives = 207/263 (78.71%), Query Frame = 1 
Query:    1 GRVIDHLERGSLDLSSVRFFVLDEADEMLKMGFVEEVDKVLARAPEQRQIALFSATMPREVQRLAETYLHEPELVKFEERTQIAETIRQRYLVVKGNLKLDAVTRVLETEDFDAMLIFVRTKNDTVELADKLAARGHSCAALNGDMPQRARERTVDRLKDGRLDIIVATDVAARGLDVQRISHVLNYDLPTGIEAYTHRIGRTGRAGREGHAIVFVKPNERRALGSIERASGRKIEAYSVPTTDEVNASRIDRFKERIKENLG 789
            GRVIDH+E+G+L L S+R+ VLDEADEML+MGF+++V+K+L + PE RQ+ALFSATMP +++R+A+TYL  P  +  + +T  A  IRQRY +V G  KLDA+TR+LE E F+ MLIF RTKN+T +LADKL+ARG S  ALNGD+ QR RER V +LKDG +DI+VATDVAARGLDV+RISHV+NYD+PT  E+Y HRIGRTGRAGR G AI+FV P ER  L +IERA+ + I+   +P+TD VN  RI RFK+RI + LG
Sbjct:  138 GRVIDHIEKGTLKLDSLRYLVLDEADEMLRMGFIDDVEKILQQTPETRQVALFSATMPSQIRRIAQTYLKSPAEITIKAKTTTATNIRQRYWMVSGMQKLDALTRILEVESFEGMLIFARTKNETADLADKLSARGFSAVALNGDIAQRDRERIVQKLKDGSIDIVVATDVAARGLDVERISHVVNYDIPTDTESYVHRIGRTGRAGRSGDAILFVAPRERHLLQAIERATRQTIQRMDLPSTDAVNDQRIGRFKQRIVDALG 400
[Close]
BLAST of mRNA_M-pyrifera_M_contig87025.20235.1 vs. uniprot
Match: A0A2A5CUV8_9GAMM (ATP-dependent RNA helicase DeaD n=1 Tax=Moraxellaceae bacterium TaxID=1889775 RepID=A0A2A5CUV8_9GAMM)

HSP 1 Score: 324 bits (831), Expect = 1.860e-104
Identity = 160/262 (61.07%), Postives = 207/262 (79.01%), Query Frame = 1 
Query:    1 GRVIDHLERGSLDLSSVRFFVLDEADEMLKMGFVEEVDKVLARAPEQRQIALFSATMPREVQRLAETYLHEPELVKFEERTQIAETIRQRYLVVKGNLKLDAVTRVLETEDFDAMLIFVRTKNDTVELADKLAARGHSCAALNGDMPQRARERTVDRLKDGRLDIIVATDVAARGLDVQRISHVLNYDLPTGIEAYTHRIGRTGRAGREGHAIVFVKPNERRALGSIERASGRKIEAYSVPTTDEVNASRIDRFKERIKENL 786
            GRV+DH+ +G+L L+ +R  VLDEADEML+MGF+++V+ +L + PE RQIALFSATMP +++R+A  YL+ PE V  +E+T  A TI QRY +V G  KLDA+TR+LE E FD M+IFVRTKN TVELA+KL ARG+S + LNGD+PQ  RERTV+RLK G++DI+VATDVAARGLDV+RISHV+NYD+P   E+Y HRIGRTGRAGREG AI+FV P ERR L +IERA+ ++IE   +P+ D++N  R+  FK +I E L
Sbjct:  135 GRVMDHMRKGTLKLNELRMLVLDEADEMLRMGFIDDVEWILDQIPETRQIALFSATMPDQIRRIATKYLNNPEQVTIKEKTATASTISQRYWIVSGTHKLDALTRMLEFETFDGMIIFVRTKNATVELAEKLEARGYSASPLNGDIPQAQRERTVERLKSGKVDIVVATDVAARGLDVERISHVINYDIPYDTESYVHRIGRTGRAGREGDAILFVAPRERRMLKAIERATNQRIEEMGLPSADQINIKRVQDFKNKITETL 396
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig87025.20235.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001F1485672.970e-10661.51DEAD/DEAH box helicase n=1 Tax=Candidatus Vondammi... [more]
A0A2S1JP22_9GAMM6.380e-10662.09ATP-dependent RNA helicase DeaD n=6 Tax=Microbulbi... [more]
A0A7C1XII3_9GAMM1.700e-10558.63ATP-dependent RNA helicase DeaD n=1 Tax=Gammaprote... [more]
A0A148NAI9_9GAMM2.230e-10559.54ATP-dependent RNA helicase DeaD n=1 Tax=Methylothe... [more]
A0A1V8M526_9GAMM2.910e-10561.07ATP-dependent RNA helicase DeaD n=12 Tax=Gammaprot... [more]
A0A7C1U103_9GAMM5.400e-10561.83ATP-dependent RNA helicase DeaD n=1 Tax=Gammaprote... [more]
A0A1Q2M2K6_9GAMM8.060e-10563.12ATP-dependent RNA helicase DeaD n=8 Tax=Microbulbi... [more]
A0A1C9W7Y0_9GAMM8.670e-10563.74ATP-dependent RNA helicase DeaD n=3 Tax=Microbulbi... [more]
A0A346N331_9GAMM9.840e-10561.60ATP-dependent RNA helicase DeaD n=1 Tax=Solimonas ... [more]
A0A2A5CUV8_9GAMM1.860e-10461.07ATP-dependent RNA helicase DeaD n=1 Tax=Moraxellac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig87025contigM-pyrifera_M_contig87025:4..837 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score332.8
Seed ortholog evalue1.5e-88
Seed eggNOG ortholog207954.MED92_13763
Preferred namedeaD
KEGG koko:K05592
KEGG Pathwayko03018,map03018
Hectar predicted targeting categoryother localisation
GOsGO:0000027,GO:0003674,GO:0003676,GO:0003723,GO:0003724,GO:0003725,GO:0003727,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006401,GO:0006417,GO:0006725,GO:0006807,GO:0006950,GO:0006996,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0009056,GO:0009057,GO:0009266,GO:0009314,GO:0009409,GO:0009628,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009987,GO:0010468,GO:0010501,GO:0010556,GO:0010557,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0016043,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019219,GO:0019222,GO:0019439,GO:0022607,GO:0022613,GO:0022618,GO:0030312,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031330,GO:0032268,GO:0032270,GO:0033554,GO:0033592,GO:0034248,GO:0034250,GO:0034622,GO:0034641,GO:0034655,GO:0042254,GO:0042255,GO:0042273,GO:0042623,GO:0043170,GO:0043487,GO:0043488,GO:0043489,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044444,GO:0044464,GO:0045727,GO:0045934,GO:0046483,GO:0046700,GO:0048255,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051173,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051716,GO:0060255,GO:0061013,GO:0065003,GO:0065007,GO:0065008,GO:0070035,GO:0070417,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0080090,GO:0090304,GO:0097159,GO:0097617,GO:0140098,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1902369,GO:1902373,GO:1903311,GO:1903312,GO:2000112
EggNOG free text desc.DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation
EggNOG OGs1MU49@1224,1RMWA@1236,1XIKF@135619,COG0513@1,COG0513@2
EC3.6.4.13
COG Functional cat.L
Best tax levelOceanospirillales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03009,ko03019
Exons1
Model size834
Cds size834
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816779.6458466-CDS-M-pyrifera_M_contig87025:3..8371622816779.6458466-CDS-M-pyrifera_M_contig87025:3..837Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87025 4..837 -
1692278173.909748-CDS-M-pyrifera_M_contig87025:3..8371692278173.909748-CDS-M-pyrifera_M_contig87025:3..837Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87025 4..837 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig87025.20235.1prot_M-pyrifera_M_contig87025.20235.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig87025 4..837 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig87025.20235.1

>prot_M-pyrifera_M_contig87025.20235.1 ID=prot_M-pyrifera_M_contig87025.20235.1|Name=mRNA_M-pyrifera_M_contig87025.20235.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=278bp
GRVIDHLERGSLDLSSVRFFVLDEADEMLKMGFVEEVDKVLARAPEQRQI
ALFSATMPREVQRLAETYLHEPELVKFEERTQIAETIRQRYLVVKGNLKL
DAVTRVLETEDFDAMLIFVRTKNDTVELADKLAARGHSCAALNGDMPQRA
RERTVDRLKDGRLDIIVATDVAARGLDVQRISHVLNYDLPTGIEAYTHRI
GRTGRAGREGHAIVFVKPNERRALGSIERASGRKIEAYSVPTTDEVNASR
IDRFKERIKENLGDGTERELHARVVTEL
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mRNA from alignment at M-pyrifera_M_contig87025:4..837-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig87025.20235.1 ID=mRNA_M-pyrifera_M_contig87025.20235.1|Name=mRNA_M-pyrifera_M_contig87025.20235.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=834bp|location=Sequence derived from alignment at M-pyrifera_M_contig87025:4..837- (Macrocystis pyrifera P11B4 male)
GGCCGCGTCATCGACCACCTCGAGCGCGGCAGCCTCGATCTGTCGAGCGT
GCGCTTCTTCGTGCTCGACGAGGCCGACGAGATGCTCAAGATGGGCTTCG
TCGAAGAGGTCGACAAGGTGCTCGCGCGCGCGCCCGAGCAGCGCCAGATC
GCGCTCTTCTCCGCGACGATGCCGCGCGAGGTCCAGCGCCTCGCCGAGAC
GTACCTGCACGAACCCGAGCTGGTCAAGTTCGAGGAGCGCACCCAGATCG
CCGAGACGATCCGCCAGCGCTACCTGGTCGTCAAGGGCAACCTCAAGCTC
GACGCCGTCACGCGCGTGCTCGAGACCGAGGACTTCGACGCGATGCTGAT
CTTCGTGCGCACCAAGAACGACACCGTCGAGCTGGCCGACAAACTGGCGG
CGCGCGGCCACTCGTGCGCGGCCCTGAACGGCGACATGCCCCAGCGCGCG
CGCGAGCGCACGGTCGACCGCCTCAAGGACGGCCGCCTGGACATCATCGT
CGCCACGGACGTCGCCGCCCGCGGTCTCGATGTCCAGCGCATCTCGCACG
TGCTCAACTACGACCTGCCGACGGGCATCGAGGCCTACACGCACCGCATC
GGCCGCACCGGCCGCGCGGGGCGCGAGGGCCACGCGATCGTCTTCGTCAA
GCCGAACGAGCGCCGGGCTCTGGGCTCGATCGAGCGCGCCAGCGGCCGCA
AGATCGAAGCCTACTCCGTCCCGACGACCGACGAGGTCAACGCCTCGCGG
ATCGACCGCTTCAAGGAGCGCATCAAGGAGAACCTAGGCGACGGCACCGA
GCGCGAGCTGCACGCGCGCGTCGTGACCGAGCTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig87025:4..837-

>mRNA_M-pyrifera_M_contig87025.20235.1 ID=mRNA_M-pyrifera_M_contig87025.20235.1|Name=mRNA_M-pyrifera_M_contig87025.20235.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1668bp|location=Sequence derived from alignment at M-pyrifera_M_contig87025:4..837- (Macrocystis pyrifera P11B4 male)
GGCCGCGTCATCGACCACCTCGAGCGCGGCAGCCTCGATCTGTCGAGCGT
GCGCTTCTTCGTGCTCGACGAGGCCGACGAGATGCTCAAGATGGGCTTCG
TCGAAGAGGTCGACAAGGTGCTCGCGCGCGCGCCCGAGCAGCGCCAGATC
GCGCTCTTCTCCGCGACGATGCCGCGCGAGGTCCAGCGCCTCGCCGAGAC
GTACCTGCACGAACCCGAGCTGGTCAAGTTCGAGGAGCGCACCCAGATCG
CCGAGACGATCCGCCAGCGCTACCTGGTCGTCAAGGGCAACCTCAAGCTC
GACGCCGTCACGCGCGTGCTCGAGACCGAGGACTTCGACGCGATGCTGAT
CTTCGTGCGCACCAAGAACGACACCGTCGAGCTGGCCGACAAACTGGCGG
CGCGCGGCCACTCGTGCGCGGCCCTGAACGGCGACATGCCCCAGCGCGCG
CGCGAGCGCACGGTCGACCGCCTCAAGGACGGCCGCCTGGACATCATCGT
CGCCACGGACGTCGCCGCCCGCGGTCTCGATGTCCAGCGCATCTCGCACG
TGCTCAACTACGACCTGCCGACGGGCATCGAGGCCTACACGCACCGCATC
GGCCGCACCGGCCGCGCGGGGCGCGAGGGCCACGCGATCGTCTTCGTCAA
GCCGAACGAGCGCCGGGCTCTGGGCTCGATCGAGCGCGCCAGCGGCCGCA
AGATCGAAGCCTACTCCGTCCCGACGACCGACGAGGTCAACGCCTCGCGG
ATCGACCGCTTCAAGGAGCGCATCAAGGAGAACCTAGGCGACGGCACCGA
GCGCGAGCTGCACGCGCGCGTCGTGACCGAGCTGGGCCGCGTCATCGACC
ACCTCGAGCGCGGCAGCCTCGATCTGTCGAGCGTGCGCTTCTTCGTGCTC
GACGAGGCCGACGAGATGCTCAAGATGGGCTTCGTCGAAGAGGTCGACAA
GGTGCTCGCGCGCGCGCCCGAGCAGCGCCAGATCGCGCTCTTCTCCGCGA
CGATGCCGCGCGAGGTCCAGCGCCTCGCCGAGACGTACCTGCACGAACCC
GAGCTGGTCAAGTTCGAGGAGCGCACCCAGATCGCCGAGACGATCCGCCA
GCGCTACCTGGTCGTCAAGGGCAACCTCAAGCTCGACGCCGTCACGCGCG
TGCTCGAGACCGAGGACTTCGACGCGATGCTGATCTTCGTGCGCACCAAG
AACGACACCGTCGAGCTGGCCGACAAACTGGCGGCGCGCGGCCACTCGTG
CGCGGCCCTGAACGGCGACATGCCCCAGCGCGCGCGCGAGCGCACGGTCG
ACCGCCTCAAGGACGGCCGCCTGGACATCATCGTCGCCACGGACGTCGCC
GCCCGCGGTCTCGATGTCCAGCGCATCTCGCACGTGCTCAACTACGACCT
GCCGACGGGCATCGAGGCCTACACGCACCGCATCGGCCGCACCGGCCGCG
CGGGGCGCGAGGGCCACGCGATCGTCTTCGTCAAGCCGAACGAGCGCCGG
GCTCTGGGCTCGATCGAGCGCGCCAGCGGCCGCAAGATCGAAGCCTACTC
CGTCCCGACGACCGACGAGGTCAACGCCTCGCGGATCGACCGCTTCAAGG
AGCGCATCAAGGAGAACCTAGGCGACGGCACCGAGCGCGAGCTGCACGCG
CGCGTCGTGACCGAGCTG
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