mRNA_M-pyrifera_M_contig86890.20202.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig86890.20202.1
Unique NamemRNA_M-pyrifera_M_contig86890.20202.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig86890.20202.1 vs. uniprot
Match: A0A842NYW5_9ARCH (Alanyl-tRNA editing protein n=1 Tax=Candidatus Bathyarchaeota archaeon TaxID=2026714 RepID=A0A842NYW5_9ARCH)

HSP 1 Score: 55.1 bits (131), Expect = 1.790e-7
Identity = 29/88 (32.95%), Postives = 50/88 (56.82%), Query Frame = 1 
Query:    1 QPAAGALEKLQKAVDGLVAERSPVYSLTMGRAEAEAKYGDRVFDALKVPDSVKSLSLVYIPECNIACSPCKPAGNTAASGAITITKVR 264
            +P    + +++ A + ++ E   V    MGRAEAE ++GD V+D   +P+SV  LS+ +IP  N+     +   +T   G++TI+K R
Sbjct:   46 KPTEDEMRRVEDAANRVITEDVGVEEKVMGRAEAEERWGDLVYDLFPIPESVTELSICHIPGWNVNACNREHCSSTGKIGSLTISKYR 133
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BLAST of mRNA_M-pyrifera_M_contig86890.20202.1 vs. uniprot
Match: A0A0M0BLM7_9ARCH (Alanyl-tRNA editing protein AlaX n=1 Tax=miscellaneous Crenarchaeota group-15 archaeon DG-45 TaxID=1685127 RepID=A0A0M0BLM7_9ARCH)

HSP 1 Score: 53.9 bits (128), Expect = 5.150e-7
Identity = 30/84 (35.71%), Postives = 50/84 (59.52%), Query Frame = 1 
Query:   19 LEKLQKAVDGLVAERSPVYSLTMGRAEAEAKYGDRVFDALKVPDSVKSLSLVYIPECNIACSPCKPAGN--TAASGAITITKVR 264
            L ++++  +  +AE +P+  L M RAEAEA++GD ++D   +P S+  L + +IP  N+  + C+ A    T   GA+ ITK R
Sbjct:   53 LARVEEEANAKIAEDAPIEELEMERAEAEARWGDAIYDLFPLPASITRLRIAHIPGWNV--NACREAHTETTGEIGALRITKTR 134
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BLAST of mRNA_M-pyrifera_M_contig86890.20202.1 vs. uniprot
Match: A0A1F5CNL2_9ARCH (Alanyl-tRNA editing protein AlaX n=1 Tax=Candidatus Bathyarchaeota archaeon RBG_16_57_9 TaxID=1797382 RepID=A0A1F5CNL2_9ARCH)

HSP 1 Score: 51.2 bits (121), Expect = 5.190e-6
Identity = 23/80 (28.75%), Postives = 48/80 (60.00%), Query Frame = 1 
Query:   25 KLQKAVDGLVAERSPVYSLTMGRAEAEAKYGDRVFDALKVPDSVKSLSLVYIPECNIACSPCKPAGNTAASGAITITKVR 264
            ++ + VD  ++E +P+  L M R +AEA++GD ++D   +P+S+++L + ++P  N+          T   G +T++K+R
Sbjct:   52 EISRLVDQKISENAPIEVLEMTRRDAEARFGDLIYDKFPLPESIQTLRVFHLPGWNVNACNKTHTRTTGEIGKVTLSKMR 131
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BLAST of mRNA_M-pyrifera_M_contig86890.20202.1 vs. uniprot
Match: A0A8D5U4P1_9CREN (Alanyl-tRNA editing protein AlaX n=1 Tax=Stygiolobus sp. KN-1 TaxID=2824673 RepID=A0A8D5U4P1_9CREN)

HSP 1 Score: 48.5 bits (114), Expect = 5.800e-5
Identity = 26/69 (37.68%), Postives = 39/69 (56.52%), Query Frame = 1 
Query:    1 QPAAGALEKLQKAVDGLVAERSPVYSLTMGRAEAEAKYGDRVFDALKVPDSVKSLSLVYIPECNI-ACS 204
            +P+   + K+ +  +  V E  P+    + R EAE KYGD ++D   VP  VK L ++ IPE NI AC+
Sbjct:   47 KPSEDDMNKVFELSNSKVVENLPIVIEELPREEAEKKYGDEIYDLFPVPQEVKVLKIIIIPEWNINACN 115
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig86890.20202.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A842NYW5_9ARCH1.790e-732.95Alanyl-tRNA editing protein n=1 Tax=Candidatus Bat... [more]
A0A0M0BLM7_9ARCH5.150e-735.71Alanyl-tRNA editing protein AlaX n=1 Tax=miscellan... [more]
A0A1F5CNL2_9ARCH5.190e-628.75Alanyl-tRNA editing protein AlaX n=1 Tax=Candidatu... [more]
A0A8D5U4P1_9CREN5.800e-537.68Alanyl-tRNA editing protein AlaX n=1 Tax=Stygiolob... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig86890contigM-pyrifera_M_contig86890:168..431 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size264
Cds size264
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816777.9235198-CDS-M-pyrifera_M_contig86890:167..4311622816777.9235198-CDS-M-pyrifera_M_contig86890:167..431Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86890 168..431 +
1692278172.766724-CDS-M-pyrifera_M_contig86890:167..4311692278172.766724-CDS-M-pyrifera_M_contig86890:167..431Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86890 168..431 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig86890.20202.1prot_M-pyrifera_M_contig86890.20202.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig86890 168..431 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig86890.20202.1

>prot_M-pyrifera_M_contig86890.20202.1 ID=prot_M-pyrifera_M_contig86890.20202.1|Name=mRNA_M-pyrifera_M_contig86890.20202.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=88bp
QPAAGALEKLQKAVDGLVAERSPVYSLTMGRAEAEAKYGDRVFDALKVPD
SVKSLSLVYIPECNIACSPCKPAGNTAASGAITITKVR
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mRNA from alignment at M-pyrifera_M_contig86890:168..431+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig86890.20202.1 ID=mRNA_M-pyrifera_M_contig86890.20202.1|Name=mRNA_M-pyrifera_M_contig86890.20202.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=264bp|location=Sequence derived from alignment at M-pyrifera_M_contig86890:168..431+ (Macrocystis pyrifera P11B4 male)
CAGCCCGCGGCTGGCGCGCTGGAGAAGCTTCAGAAGGCAGTGGACGGCCT
GGTCGCAGAGCGCTCGCCCGTGTACTCTCTCACCATGGGCCGTGCGGAGG
CAGAGGCGAAGTACGGCGACCGCGTGTTCGACGCGCTCAAGGTCCCCGAT
TCCGTCAAGTCCTTGTCTCTTGTGTACATCCCCGAGTGCAACATCGCCTG
CTCTCCCTGCAAGCCGGCTGGCAACACTGCCGCATCTGGCGCCATCACCA
TCACGAAGGTGCGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig86890:168..431+

>mRNA_M-pyrifera_M_contig86890.20202.1 ID=mRNA_M-pyrifera_M_contig86890.20202.1|Name=mRNA_M-pyrifera_M_contig86890.20202.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=528bp|location=Sequence derived from alignment at M-pyrifera_M_contig86890:168..431+ (Macrocystis pyrifera P11B4 male)
CAGCCCGCGGCTGGCGCGCTGGAGAAGCTTCAGAAGGCAGTGGACGGCCT
GGTCGCAGAGCGCTCGCCCGTGTACTCTCTCACCATGGGCCGTGCGGAGG
CAGAGGCGAAGTACGGCGACCGCGTGTTCGACGCGCTCAAGGTCCCCGAT
TCCGTCAAGTCCTTGTCTCTTGTGTACATCCCCGAGTGCAACATCGCCTG
CTCTCCCTGCAAGCCGGCTGGCAACACTGCCGCATCTGGCGCCATCACCA
TCACGAAGGTGCGTCAGCCCGCGGCTGGCGCGCTGGAGAAGCTTCAGAAG
GCAGTGGACGGCCTGGTCGCAGAGCGCTCGCCCGTGTACTCTCTCACCAT
GGGCCGTGCGGAGGCAGAGGCGAAGTACGGCGACCGCGTGTTCGACGCGC
TCAAGGTCCCCGATTCCGTCAAGTCCTTGTCTCTTGTGTACATCCCCGAG
TGCAACATCGCCTGCTCTCCCTGCAAGCCGGCTGGCAACACTGCCGCATC
TGGCGCCATCACCATCACGAAGGTGCGT
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