mRNA_M-pyrifera_M_contig8681.20187.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8681.20187.1
Unique NamemRNA_M-pyrifera_M_contig8681.20187.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig8681.20187.1 vs. uniprot
Match: D8LNR5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNR5_ECTSI)

HSP 1 Score: 239 bits (609), Expect = 1.250e-78
Identity = 118/148 (79.73%), Postives = 134/148 (90.54%), Query Frame = 1 
Query:    1 MADEEKKPRHRLGADELLEEVQAAVAKIITLLESNGLAEESVEHLVSLVKGLDFMGTLDLSKRLGLSMPDVPHEELVASLLDAWDCVVYKTGHTRKQMYRKVRVLEADNKTDPDILERWKGERERAERESAKANVAYVTIREMVKSFK 444
            MADE++KPRHRLGADELLEE Q A AKI+ LLE NGLA ES+EHL SL KG DFMG+L+L++RLGLSMPDVPH +LV  LLDAWDCVVYKTGHTRKQMYRKVR+LEADNKT+PD L+RWKGER++AERESAKANVAYVT+RE+ KSFK
Sbjct:    1 MADEDRKPRHRLGADELLEETQGASAKIVNLLEVNGLAAESIEHLTSLTKGGDFMGSLNLARRLGLSMPDVPHNDLVVLLLDAWDCVVYKTGHTRKQMYRKVRLLEADNKTEPDTLDRWKGERDKAERESAKANVAYVTMREIAKSFK 148
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BLAST of mRNA_M-pyrifera_M_contig8681.20187.1 vs. uniprot
Match: A0A835ZPP5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZPP5_9STRA)

HSP 1 Score: 131 bits (329), Expect = 5.780e-36
Identity = 66/149 (44.30%), Postives = 99/149 (66.44%), Query Frame = 1 
Query:    1 MADE---EKKPRHRLGADELLEEVQAAVAKIITLLESNGLAEESVEHLVSLVKGLDFMGTLDLSKRLGLSMPDVPHEELVASLLDAWDCVVYKTGHTRKQMYRKVRVLEADNKTDPDILERWKGERERAERESAKANVAYVTIREMVKS 438
            M+DE   EKKPR R+ A+ELLEE   A+ K +  LESNGL   SVE++  L   L +   L L++ LG +MP + H+  +  LLD W+CV     ++R+  YRKVRVLEAD KTDP++L +W  +R R ++ESA  N++Y+ +R+++++
Sbjct:    1 MSDEPAGEKKPRTRMNAEELLEETSQAMEKAVAFLESNGLHAASVENVRHLTSALAWSDALHLTQSLGFTMPHIDHDAFIVMLLDTWECVAQMKLNSRRACYRKVRVLEADQKTDPEVLAKWLADRARVDKESAATNLSYIKMRQILRA 149
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8681.20187.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LNR5_ECTSI1.250e-7879.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZPP5_9STRA5.780e-3644.30Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8681contigM-pyrifera_M_contig8681:4148..9877 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-08_006120.1
Exons3
Model size444
Cds size444
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8681.20187.1prot_M-pyrifera_M_contig8681.20187.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8681 4148..9877 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816777.3569665-CDS-M-pyrifera_M_contig8681:4147..42881622816777.3569665-CDS-M-pyrifera_M_contig8681:4147..4288Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8681 4148..4288 -
1692278172.404468-CDS-M-pyrifera_M_contig8681:4147..42881692278172.404468-CDS-M-pyrifera_M_contig8681:4147..4288Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8681 4148..4288 -
1622816777.3686013-CDS-M-pyrifera_M_contig8681:9290..94281622816777.3686013-CDS-M-pyrifera_M_contig8681:9290..9428Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8681 9291..9428 -
1692278172.4169328-CDS-M-pyrifera_M_contig8681:9290..94281692278172.4169328-CDS-M-pyrifera_M_contig8681:9290..9428Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8681 9291..9428 -
1622816777.380718-CDS-M-pyrifera_M_contig8681:9712..98771622816777.380718-CDS-M-pyrifera_M_contig8681:9712..9877Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8681 9713..9877 -
1692278172.4288461-CDS-M-pyrifera_M_contig8681:9712..98771692278172.4288461-CDS-M-pyrifera_M_contig8681:9712..9877Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8681 9713..9877 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8681.20187.1

>prot_M-pyrifera_M_contig8681.20187.1 ID=prot_M-pyrifera_M_contig8681.20187.1|Name=mRNA_M-pyrifera_M_contig8681.20187.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=148bp
MADEEKKPRHRLGADELLEEVQAAVAKIITLLESNGLAEESVEHLVSLVK
GLDFMGTLDLSKRLGLSMPDVPHEELVASLLDAWDCVVYKTGHTRKQMYR
KVRVLEADNKTDPDILERWKGERERAERESAKANVAYVTIREMVKSFK
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mRNA from alignment at M-pyrifera_M_contig8681:4148..9877-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8681.20187.1 ID=mRNA_M-pyrifera_M_contig8681.20187.1|Name=mRNA_M-pyrifera_M_contig8681.20187.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=5730bp|location=Sequence derived from alignment at M-pyrifera_M_contig8681:4148..9877- (Macrocystis pyrifera P11B4 male)
ATGGCCGACGAAGAAAAGAAGCCTCGCCACAGACTTGGCGCGGATGAACT
GCTGGAGGAAGTACAGGCAGCCGTGGCCAAAATCATCACGCTCCTCGAAT
CCAACGGGCTTGCCGAAGAGTCCGTTGAGCATCTCGTAAGCTTGGTGAAA
GGGCTCGACTTCATGGTGAGACTGCGGGCTACGGTCGAGTTTTGGGGGTC
AGAACGACCCCCCACCGAACCCTCTGATGCGTGTGCTGGATAGTAAGCTG
CAGGGCACGCTGCAGCGACAGCTTATTCGAAGTCAATGGAGTCGACGGAC
TGTTAAAATTGACACCAAAGATACGCTCGGTTGGATTTATGATAATATAC
TGATGTGAGACCTGGTACAAGACCAGTATGCTCAAGCTCACGAAGCACCT
GATGATTTGTACGTATATGGGATTTGTTCGACCCCTCCCTTTGTTCCAGG
GCACGCTGGACCTGTCTAAGCGCTTGGGTCTCAGCATGCCGGATGTGCCG
CACGAGGAACTGGTGGCCTCGCTTTTGGACGCGTGGGACTGTGTCGTGTA
TAAGACAGGGCACACTCGGAAACAGATGTATCGGAAGGTGCGTTTTGGTT
GCTAAGAGAGACCCCAAGCAGCAGCAGTGCCTCATGTTACAGAAGTTATG
TTGACGTTGACAGCACAGCAGAACGGTGCTGTATCTATGGCAGATAGGAT
AATCGAGTACTCTGTACTGCTGTACCAGGTACTGGTATGTATTAGTATTT
CAAATCGAGCGTGTCAGGTATAATATCACATCGTGTTCCAAGTCAACGAG
CAAAGAAAGTGCGCTACTTCCTTTCTTTTACACTCGCAGTGCGCCACCAG
TCAGCGCAATGGCAACAAACACATAGTCACGTGTTCGTAGAGAGCGCTGC
TGTGTTTACGCAGCGTGTGTACGCTGCGACTGGACTGCCACGTACCTGGT
ATGCATATAATGTTCTTCGAAAGCGCGATCTACTACTGCTGGAAATTGGA
AAACAATTTTGTATGTTCCGGAAGCCATGAAGCCGGTCGCCTGTGGCCCA
GACCTCAGGAATACCAGGTACACGATATTATACTTGCTGTATACGGCAAA
TGCGAGACCAGATCCGATCTCCTCGGGGTGCCCTACACCAAACAAAACAG
GCAGCTCTCCCCCCGATCACTGGGCCATACGTTTGCCACGCCGATCTTTT
CCAATGCCACAGTATGGTCGCGGGTGGGTAAGTACAGAGCCGTGCCGCTG
TGAACGCCGCTCGCAGTAAAATGCCCTACTCAGCAAGCCTACATGGTACC
CGAGGTACCAGGTATCACAGCATGATAGCGGGCGGGTACGTATGATACAA
GAAAATTGTTCGTTTATATCTTCCTGCAGACCTTCTTGTGGATCATACCC
CCTCGGTCTCCCGCTTCGGTCGTGCAGGCGATCTAATTTCCAGCTGCTAA
TTTCCACACGCCGAGTGCCACCTGCACTACGTTGCAGGCTGAACCACACT
CTGACAGAATCTGTGTGTACCACTACTAATAGCACAACAGCACTGCTGCT
GTGCCACTGCTACTGCTGCTGCAGCGCTGTCTGCAGAGAGTCTCCATGAC
CGCGCTCATGTTCGCCCCACAGCAGTACGTTTGACTCAGCCTATCCCACA
CCTCATACTACACTCCGTCATAGCACATGGTCTGTCTAGGAATGACGCCC
GGATATACACGTATCCTCTGGAGGTCTGCGTGTGCAGGCCAGGGAGTCGG
GTCCGGTCGGTGTCGTGTGCCAAATAATGTTTTTGCGATTAGTTTTGTTT
TGCCGGGGGGTACACACCCGTGCGTTCGGCACCCGGCACGCACGCACACG
CCGAACAGGGACTCCGTACGAAGAAAATTACTTTTTGAGACTTACGTACA
CAGAGACCAGAAAACGGCGAATGCGATCTTATTCTACAAGCAGTATTAAA
TAATACAGCAGAGAGTGTACGTACGTTTACTCCTGCACTCCTAGCAGGAG
CGTAGCAGTGTGGGTGGGTATCGCCGTGCTGGGCGCGTGTCGTGTAGCTC
CATGCAGTGCACAGCAGCCCGGACGCATCTTCTACCCATGGCAGTCCGGG
GTTCTTCGTGTGGCTGATCCGATAGGGCTGTGATTTAATTCGCTCTCCTT
CTCTCAATTCCCCCCCGGTTGTCTATCATAATAATGGTGGTTACCCTCGA
ATGCTACTAATATTAATATATAATATAGTGTTATGTTTGCCATCCGACAA
TGTGGAGCATGAGCTTGAACTCTGATCACTCAAAACATTCCTGAAAGAAG
AAAACGACGGGAATTAATTATATTAAAATTGTTTTCGAGAATTCGAATCC
AAATGTGGTGAAGCTGTGAATTAATGTTGCAACATTAAAAATCAACTGCG
CGCAGAGTGCGGGTAGGCGCAATTCGCCGCGAGTCGACGAGGGAAGAAAG
GGCTGATCAAATGTTCGCGCGATAAATATGGAAGAAGCGTACCGTATCGG
GAGTGGGGAGTGGGGAGTGGGGAGAGAGGAGAAGAGCATCTGCTATGTGA
CCCTGGATCTAAATTCTTGCTACGAGTGTGAACCCGGATCTGAGTTGCGA
CTGACGAATATCTCCTAATTATTAGTGTTTGGTACGTAAGAAGAAGGGGC
GAGAAAAGAAGGGCGAAGATAATAAACGGGGGATGGAAAAAAAAGAAGAA
AAACAAAATCCCGAATAAATAGGTGCCTGTGATACAGCAGCAGTACGTCA
CAGCAGTGCTGATGTGCTGATGATTGTGTAGGTCTGTCACCGCTGTCCTT
TTCACTTGTTGTCCACGTGGCATGGCATGGTTTCGAGGCTTGGTTTCTCT
TCTTGGGGTCATTTTTGCGGCCGAAAGACGTACCACTCTGAGAGGAAATA
GAAGGAACGTTTATTATATCTGAACACGAAGATCCAACCGTCCTTATATT
TTCCGCCCGGAGTCGTATCCAACTACACTGTGATTCCAGGTCAGGTAGCC
CTCGCTGACAGGTAAGTGTATACAGTATGGGCCCGCCAACAAGAAACGCC
TATTCTGGGCAAGCCTGATACTCTTATCGGGGCGCCATCTTCGAACAACC
TTAAGCATACCATTATATAGGATTTAGTGTAGAGTTCACCACGGGGCCGT
TTTCTTAACCCGATTTTCTTTGCGTTCTCCAAAAGGTGAGCATTGTGTTC
GTGTTGAGCACTTTCTTATTAGCGGACATATACTGCTGTAGGAGCACACG
TACGCAATATGTGTCCGGTGTCCTTGTGTGCGTATCACGATTGTGTTTGC
CGTTGGACGATGTGCAGCATGAGCTTCAACGTTGATCACTCAGAAGGATT
CCTCGAAAGAGGAAGAAAAGCAAGGGAAACCCGAACACCTTGTTGTTGTG
TTTTGTTGCACACTGTGACACTGACTCCGCAACTATTTTGTTGTCTTCCA
CGTTGTCCCGTTCTTGCTACCCGACGACATCCAGTACACCCAGTGTCCCT
CCTAATTGCCCGTCCTAATTAAAAGAGATTTGAAGTACGAGTAAGTGGTT
ACAGACTGCTGGGATACTGGGAAACTTAAAATCATCGTATATTAGTCGCG
GTAAATGAATGAAAGGTTAACGTACAGGATACGAAAAGCGCAACAAAAAA
AAACAGGCCAAACAAGAAAAAAAAAAAAAAAATGAAAAGTCACTGGAAAT
TACGTTTGTTTACTACCTGGTACTGGTGTGCACCGGGTATTGTGATTGTC
ATCGTTCCTCAACAACATTCCTCAACAACGTCCAGCATGAGATGCAACGT
TCATCAATCGTGAACGTTCCCAGAATCAACAAAAATGACGACGAAAACTT
TTTCCAAAAACAGGAAACCTACAGCTATGCACGCACAGAATATGTACAGA
GTACCCGTAGTGAGACTCCATTTTGCAGCAGTACCTATTATCGGTTTAAC
CTTTTTAGGGCTGCAGTCCCGTTTCGAGAACAAACTACTTGGAATTAGAG
TGGTTTGTCCCCAAAATGGGACTGCAGTTCTGAAACGGATTTTAAAACCC
TTTTCCTGCTGCAAAAGTGGTTACAGTCTAATTTCAAGTAGTTTGTCCCC
AAAAACGGAGGTGCAGTTGTACAGGAGTTGTGACCCACTTGCTCGTAATA
CAATAATTTTCCTGTACCACTTCCGAGGAGTTCGATCTGTATCGTCTCTT
GAAAAAAAACAATTACCTAATGTATAGTCAATTCACGCTACCCAAACATT
CGAACTCAAGTAGTATATATTAATACAGTAGTCAATTCATAAATGCCAGC
CACCGCTATACTTGTATAGCCCGGCCCAACCCTCCTCCTACCCCCTCCCA
AATTCGCTCGTCCTGCCTTGCTTGTACAAGGATGCCCCCCCCCCTCCCCT
CCCTCCCTCCCCCAAACTTATCGTTTCCCAAAAAAATATAACGAATGTGT
TCGCACTTACTGTGGCTACCAGATCCTATCCCCTAAATCGTACCTGGTAC
GTATCGTCTCTCATTATCGCTATAAACCTTCAAGACCACCCATGGTTTCT
CCGGGCACTCTGAGATTTTCTTCTATAATTCATGAACTCTTCTAATAGTT
GCTGAGCCCGATGTCATAAGGACTACCGTGGACTGGGTAATCGATCGGTC
TCTTACCCCTATAGCTCAGTAGGTTATATGCTCACATTTGGCGTCGTCAA
GGACACGGGTTCGAATCTCACTTTGAGCGTTTCTTTTATAGAAACGCTTG
CGTGTGCGTCCCTGAAAAAACATATCTCCCTGGTTCCCCAAGTATTGAGA
CGAAGCGGGTAGGCCAGTCAGCGTGCGGCCGTATAAGGTACCGACGCCCC
AAATATCCCGCCGTTCAGATGGGGGGAAAGTGATATAAGGCTTACCCTGG
GCGGGTAATCGATCGATCTTTTATCTAACCTACTGAGCTATAGGGGTAAA
ATATCGATTAATTACCCAGCCCAGGGCATTCCTTATAACACCCCCCCCCC
CTCTGAACGGCGGGGTATTTTGGGCCTCCGTACCGTGTACGGCCGTACGC
TGACCTACCCGCTTCGTTTCAATACCTGGGGAACCAGGGAGATGTATTTA
CAGTTTCTAGGGACGCACGCGCGAGCGTTTCTATAAAAGAAACATTCGAA
GCGAGATTTGAACCCTTGTCCTCGATGGCGTCAAATGTGAAGGTGTTACC
TACTGAGCTATAGGGGTGAAAAATCGATCGGTTACCCAGTAGCCCAGGGT
AATCCTTGTGGCATACCCCTGTAGCTCATCAGGCAATACCTTCACACCGA
GGGGAGTGCGGTGGCGCCACACAACCCACCAGGGTGTGTGCTAGTGTATA
ATGCCACCACACACAAATCACAGAAAGAGCTAGCTTGCTGCGAAACTAGC
GTCTCACTCTACATGACGTATACCTGGTATACTACGGTGTTACGATATTT
TCTGTAAACTTGAGCCATTCATCAATTAGTTTCACCCACCCATTGACATA
TACCCTGTATTACTATCTCATATTCGTCCACGTGCTGCCCTCGCTCCACG
CCCTTCTTTGTTGTTGTGTTGGGTTTTGCGGTGGTCCAGGTGAGGGTCCT
GGAAGCGGACAACAAAACCGATCCCGACATTCTCGAGCGATGGAAGGGCG
AGCGGGAGAGGGCGGAGCGAGAAAGCGCCAAGGCCAACGTGGCCTACGTC
ACCATTCGCGAGATGGTCAAGTCCTTCAAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8681:4148..9877-

>mRNA_M-pyrifera_M_contig8681.20187.1 ID=mRNA_M-pyrifera_M_contig8681.20187.1|Name=mRNA_M-pyrifera_M_contig8681.20187.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=888bp|location=Sequence derived from alignment at M-pyrifera_M_contig8681:4148..9877- (Macrocystis pyrifera P11B4 male)
ATGGCCGACGAAGAAAAGAAGCCTCGCCACAGACTTGGCGCGGATGAACT
GCTGGAGGAAGTACAGGCAGCCGTGGCCAAAATCATCACGCTCCTCGAAT
CCAACGGGCTTGCCGAAGAGTCCGTTGAGCATCTCGTAAGCTTGGTGAAA
GGGCTCGACTTCATGATGGCCGACGAAGAAAAGAAGCCTCGCCACAGACT
TGGCGCGGATGAACTGCTGGAGGAAGTACAGGCAGCCGTGGCCAAAATCA
TCACGCTCCTCGAATCCAACGGGCTTGCCGAAGAGTCCGTTGAGCATCTC
GTAAGCTTGGTGAAAGGGCTCGACTTCATGGGCACGCTGGACCTGTCTAA
GCGCTTGGGTCTCAGCATGCCGGATGTGCCGCACGAGGAACTGGTGGCCT
CGCTTTTGGACGCGTGGGACTGTGTCGTGTATAAGACAGGGCACACTCGG
AAACAGATGTATCGGAAGGGCACGCTGGACCTGTCTAAGCGCTTGGGTCT
CAGCATGCCGGATGTGCCGCACGAGGAACTGGTGGCCTCGCTTTTGGACG
CGTGGGACTGTGTCGTGTATAAGACAGGGCACACTCGGAAACAGATGTAT
CGGAAGGTGAGGGTCCTGGAAGCGGACAACAAAACCGATCCCGACATTCT
CGAGCGATGGAAGGGCGAGCGGGAGAGGGCGGAGCGAGAAAGCGCCAAGG
CCAACGTGGCCTACGTCACCATTCGCGAGATGGTCAAGTCCTTCAAGGTG
AGGGTCCTGGAAGCGGACAACAAAACCGATCCCGACATTCTCGAGCGATG
GAAGGGCGAGCGGGAGAGGGCGGAGCGAGAAAGCGCCAAGGCCAACGTGG
CCTACGTCACCATTCGCGAGATGGTCAAGTCCTTCAAG
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