mRNA_M-pyrifera_M_contig86432.20122.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig86432.20122.1
Unique NamemRNA_M-pyrifera_M_contig86432.20122.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig86432.20122.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig86432contigM-pyrifera_M_contig86432:133..846 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.7
Seed ortholog evalue1.6e-12
Seed eggNOG ortholog227086.JGI_V11_87460
Preferred nameZNF598
KEGG koko:K22381
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004842,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006325,GO:0006412,GO:0006414,GO:0006417,GO:0006464,GO:0006513,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008270,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010608,GO:0016043,GO:0016567,GO:0016569,GO:0016570,GO:0016574,GO:0016740,GO:0019222,GO:0019538,GO:0019787,GO:0030163,GO:0031323,GO:0031326,GO:0032268,GO:0032446,GO:0034248,GO:0034641,GO:0034645,GO:0036205,GO:0036211,GO:0043021,GO:0043022,GO:0043043,GO:0043167,GO:0043169,GO:0043170,GO:0043412,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044271,GO:0044424,GO:0044464,GO:0044877,GO:0046872,GO:0046914,GO:0050789,GO:0050794,GO:0051171,GO:0051246,GO:0051276,GO:0060255,GO:0061630,GO:0061659,GO:0065007,GO:0070647,GO:0071704,GO:0071840,GO:0072344,GO:0080090,GO:0097159,GO:0140096,GO:1901363,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:2000112,GO:2000765
EggNOG free text desc.rescue of stalled ribosome
EggNOG OGsCOG5236@1,KOG2231@2759
EC2.3.2.27
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Exons2
Model size564
Cds size561
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig86432.20122.1prot_M-pyrifera_M_contig86432.20122.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig86432 133..843 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816774.0410047-CDS-M-pyrifera_M_contig86432:132..2841622816774.0410047-CDS-M-pyrifera_M_contig86432:132..284Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86432 133..284 -
1692278170.4850788-CDS-M-pyrifera_M_contig86432:132..2841692278170.4850788-CDS-M-pyrifera_M_contig86432:132..284Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86432 133..284 -
1622816774.0539315-CDS-M-pyrifera_M_contig86432:434..8431622816774.0539315-CDS-M-pyrifera_M_contig86432:434..843Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86432 435..843 -
1692278170.4999397-CDS-M-pyrifera_M_contig86432:434..8431692278170.4999397-CDS-M-pyrifera_M_contig86432:434..843Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig86432 435..843 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816774.0685081-UTR-M-pyrifera_M_contig86432:843..8461622816774.0685081-UTR-M-pyrifera_M_contig86432:843..846Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig86432 844..846 -
1692278170.5096376-UTR-M-pyrifera_M_contig86432:843..8461692278170.5096376-UTR-M-pyrifera_M_contig86432:843..846Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig86432 844..846 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig86432.20122.1

>prot_M-pyrifera_M_contig86432.20122.1 ID=prot_M-pyrifera_M_contig86432.20122.1|Name=mRNA_M-pyrifera_M_contig86432.20122.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=187bp
MVFPRDQRVYKDSELRTHMVRGDPPRDGCGPIEPHPYCELCHEGFLTADE
LYAHLERCHIACSVCAQRDAALDGASDLDSVRRRYYKTEFDLRAHAERRH
WVCNDISCRTRASRDGTGVVAFATKVEFDQHRFKVHEARRSRTKRGERES
GRGGGSGGGGGGRAGRRGGAASGGGGSGGGGGGGSGG
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mRNA from alignment at M-pyrifera_M_contig86432:133..846-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig86432.20122.1 ID=mRNA_M-pyrifera_M_contig86432.20122.1|Name=mRNA_M-pyrifera_M_contig86432.20122.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=714bp|location=Sequence derived from alignment at M-pyrifera_M_contig86432:133..846- (Macrocystis pyrifera P11B4 male)
CGAATGGTGTTCCCAAGAGACCAGCGTGTGTACAAGGATAGTGAATTACG
TACACATATGGTTCGAGGTGATCCACCACGCGATGGTTGTGGACCAATTG
AGCCACATCCATACTGTGAATTGTGCCATGAAGGATTTTTAACTGCAGAT
GAATTGTATGCGCACTTAGAAAGGTGTCATATTGCATGCAGTGTTTGTGC
ACAACGTGATGCTGCTTTAGATGGAGCTAGTGATCTGGATTCCGTACGTA
GACGATACTACAAGACAGAGTTTGATCTACGTGCACATGCAGAACGTCGC
CATTGGGTTTGTAATGACATATCTTGTCGTACACGTGCATCACGTGATGG
CACTGGTGTCGTTGCATTTGCAACCAAAGTTGAATTTGATCAGCATCGTT
TCAAAGTCCATGGTGCACCAAAGCCTCGTGGAGATATTGCATTCTCTGAT
TTCGATCATATCCCACCAGGTGCAGATGGAAGATCTCGTTCTCCAAATGT
TCTCATCTTCAATCCAGTCTCTGGAGAAGCATGGCTTGAAAGTGGTGGGG
GGAAAGATGCAGAAGCAAGACGATCTCGCACAAAACGAGGAGAAAGAGAA
AGTGGACGAGGTGGAGGAAGTGGAGGAGGTGGAGGAGGGCGGGCAGGACG
CCGGGGTGGTGCAGCAAGCGGAGGTGGGGGTAGTGGTGGAGGTGGAGGTG
GGGGTAGTGGTGGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig86432:133..846-

>mRNA_M-pyrifera_M_contig86432.20122.1 ID=mRNA_M-pyrifera_M_contig86432.20122.1|Name=mRNA_M-pyrifera_M_contig86432.20122.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1122bp|location=Sequence derived from alignment at M-pyrifera_M_contig86432:133..846- (Macrocystis pyrifera P11B4 male)
ATGGTGTTCCCAAGAGACCAGCGTGTGTACAAGGATAGTGAATTACGTAC
ACATATGGTTCGAGGTGATCCACCACGCGATGGTTGTGGACCAATTGAGC
CACATCCATACTGTGAATTGTGCCATGAAGGATTTTTAACTGCAGATGAA
TTGTATGCGCACTTAGAAAGGTGTCATATTGCATGCAGTGTTTGTGCACA
ACGTGATGCTGCTTTAGATGGAGCTAGTGATCTGGATTCCGTACGTAGAC
GATACTACAAGACAGAGTTTGATCTACGTGCACATGCAGAACGTCGCCAT
TGGGTTTGTAATGACATATCTTGTCGTACACGTGCATCACGTGATGGCAC
TGGTGTCGTTGCATTTGCAACCAAAGTTGAATTTGATCAGCATCGTTTCA
AAGTCCATGATGGTGTTCCCAAGAGACCAGCGTGTGTACAAGGATAGTGA
ATTACGTACACATATGGTTCGAGGTGATCCACCACGCGATGGTTGTGGAC
CAATTGAGCCACATCCATACTGTGAATTGTGCCATGAAGGATTTTTAACT
GCAGATGAATTGTATGCGCACTTAGAAAGGTGTCATATTGCATGCAGTGT
TTGTGCACAACGTGATGCTGCTTTAGATGGAGCTAGTGATCTGGATTCCG
TACGTAGACGATACTACAAGACAGAGTTTGATCTACGTGCACATGCAGAA
CGTCGCCATTGGGTTTGTAATGACATATCTTGTCGTACACGTGCATCACG
TGATGGCACTGGTGTCGTTGCATTTGCAACCAAAGTTGAATTTGATCAGC
ATCGTTTCAAAGTCCATGAAGCAAGACGATCTCGCACAAAACGAGGAGAA
AGAGAAAGTGGACGAGGTGGAGGAAGTGGAGGAGGTGGAGGAGGGCGGGC
AGGACGCCGGGGTGGTGCAGCAAGCGGAGGTGGGGGTAGTGGTGGAGGTG
GAGGTGGGGGTAGTGGTGGAAAGCAAGACGATCTCGCACAAAACGAGGAG
AAAGAGAAAGTGGACGAGGTGGAGGAAGTGGAGGAGGTGGAGGAGGGCGG
GCAGGACGCCGGGGTGGTGCAGCAAGCGGAGGTGGGGGTAGTGGTGGAGG
TGGAGGTGGGGGTAGTGGTGGA
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