mRNA_M-pyrifera_M_contig85746.19995.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig85746.19995.1
Unique NamemRNA_M-pyrifera_M_contig85746.19995.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig85746.19995.1 vs. uniprot
Match: A0A6B2L527_9EUKA (Uncharacterized protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L527_9EUKA)

HSP 1 Score: 70.5 bits (171), Expect = 9.330e-12
Identity = 46/122 (37.70%), Postives = 63/122 (51.64%), Query Frame = 1
Query:    7 YATEVFSASELEALREMVEGFGTYNTALGDV----TAKESIGEGGKMGTAACDHPLLVPGGVNGSECKFPGRLDTALSYVRHGGHHGVKEPFEVMATRALTFLSYNRDGFLSDPKSPVQHLF 360
            Y T+  +    + L E ++GF +  T   D+    T  E IGE        C HPLLVP  V+ + C FPGR+D A+ Y+  GGH G+KE FE +A+R  +F  Y  D     P   +Q LF
Sbjct:   27 YQTDFITEHTRQTLLETLKGFQSLPTNAMDLKYYKTRHEHIGEAVPF-DGQCPHPLLVPN-VDRTLCVFPGRVDVAMHYITTGGHEGLKESFEKLASRVQSFGVYIFD---LAPHPALQDLF 143          
BLAST of mRNA_M-pyrifera_M_contig85746.19995.1 vs. uniprot
Match: E4X8I0_OIKDI (Uncharacterized protein n=1 Tax=Oikopleura dioica TaxID=34765 RepID=E4X8I0_OIKDI)

HSP 1 Score: 64.3 bits (155), Expect = 9.460e-10
Identity = 44/124 (35.48%), Postives = 65/124 (52.42%), Query Frame = 1
Query:    1 YHYATEVFSASELEALREMVEGFGTYNTALGDVTAK--ESIGEGG-KMGTAACDHPLLVPGGVNGSECKFPGRLDTALSYVRHGGHHGVKEPFEVMATRALTFLSYNRDGFLSDPKSPVQHLFQ 363
            Y    +  S S +E+LRE V     + TA+ D  A+  ESIGE   K     CD  +    G     CKF GR D  L +++ GGH G+KE  E + +  L+F++Y  D  ++DP+  ++ LFQ
Sbjct:   46 YEIVEDFLSESNIESLREWVFNERRFATAV-DAAARGVESIGEDEPKNADGGCDE-MTFSAGPQSPTCKFSGRADIGLHFIKTGGHRGMKETPEKLISSILSFINYYPDK-VNDPE--IKKLFQ 164          
BLAST of mRNA_M-pyrifera_M_contig85746.19995.1 vs. uniprot
Match: E4Y3X9_OIKDI (Uncharacterized protein n=1 Tax=Oikopleura dioica TaxID=34765 RepID=E4Y3X9_OIKDI)

HSP 1 Score: 63.5 bits (153), Expect = 2.680e-9
Identity = 43/124 (34.68%), Postives = 65/124 (52.42%), Query Frame = 1
Query:    1 YHYATEVFSASELEALREMVEGFGTYNTALGDVTAK--ESIGEGGKMGT-AACDHPLLVPGGVNGSECKFPGRLDTALSYVRHGGHHGVKEPFEVMATRALTFLSYNRDGFLSDPKSPVQHLFQ 363
            Y    +  S S +E+LRE V     + TA+ D  A+  ESIGE   +     CD  +    G     CKF GR D  L +++ GGH G+KE  E + +  L+F++Y  D  ++DP+  ++ LFQ
Sbjct:   46 YEIVEDFLSESNIESLREWVFNERRFATAV-DAAARGVESIGEDEPINADGGCDE-MTFSAGPQSPTCKFSGRADIGLHFIKTGGHRGMKETPEKLISSILSFINYYPDK-VNDPE--IKKLFQ 164          
BLAST of mRNA_M-pyrifera_M_contig85746.19995.1 vs. uniprot
Match: F2U4N7_SALR5 (Uncharacterized protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U4N7_SALR5)

HSP 1 Score: 61.6 bits (148), Expect = 1.250e-8
Identity = 35/105 (33.33%), Postives = 54/105 (51.43%), Query Frame = 1
Query:    1 YHYATEVFSASELEALREMVEGFGTYNTALGDVT-AKESIGEGGKMGTA-ACDHPLLVPGGVNGSECKFPGRLDTALSYVRHGGHHGVKEPFEVMATRALTFLSY 309
            Y    E+++  E   L +MV  +  + + + D T A ++IGE         C HPL+VP   NGS C    RLD    YV  GG+ G+KE ++ + +R L+F  +
Sbjct:   37 YEIINEIWTPQEQSELADMVRSYSEFFSVISDQTPATDNIGEAVPYDPEKGCTHPLMVPS-RNGSHCILAPRLDIGRHYVLTGGNTGLKESYDKLVSRLLSFAQF 140          
BLAST of mRNA_M-pyrifera_M_contig85746.19995.1 vs. uniprot
Match: A0A7S4MSZ5_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4MSZ5_9EUKA)

HSP 1 Score: 57.8 bits (138), Expect = 2.760e-7
Identity = 29/71 (40.85%), Postives = 39/71 (54.93%), Query Frame = 1
Query:  100 TAKESIGEGGKM-GTAACDHPLLVPGGVNGSECKFPGRLDTALSYVRHGGHHGVKEPFEVMATRALTFLSY 309
            T  E IGE   +     C+HP +VP  VNG+ C  PGR+D    Y+  GG  G+KE +E +  R L+F  Y
Sbjct:   77 TRHEHIGEALPLPADRKCEHPYMVPS-VNGTHCVLPGRIDVGRHYILGGGVQGIKETYEDLVARLLSFGRY 146          
BLAST of mRNA_M-pyrifera_M_contig85746.19995.1 vs. uniprot
Match: A0A6G0V1A0_9BILA (Uncharacterized protein n=1 Tax=Halicephalobus sp. NKZ332 TaxID=2598192 RepID=A0A6G0V1A0_9BILA)

HSP 1 Score: 53.9 bits (128), Expect = 6.150e-6
Identity = 33/95 (34.74%), Postives = 49/95 (51.58%), Query Frame = 1
Query:   40 EALREMVEGFGTYNTALGDVT----AKESIGEGGK-MGTAACDHPLLVPGGVNGSECKFPGRLDTALSYVRHGGHHGVKEPFEVMATRALTFLSY 309
            E L  MV+   ++ T   D+T      E IGE    +   +C    L+P   +  EC  P R D A  ++++GG  G+KE +E++ATR LTF  Y
Sbjct:   52 EELLNMVKKVKSFPTNANDLTHLNRTYEHIGEAEPILANGSCRSSFLIPS-KDRKECVLPSRFDIAYHFMKYGGIDGLKEKYEMLATRMLTFGRY 145          
BLAST of mRNA_M-pyrifera_M_contig85746.19995.1 vs. uniprot
Match: A9UU03_MONBE (Predicted protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9UU03_MONBE)

HSP 1 Score: 51.6 bits (122), Expect = 4.090e-5
Identity = 31/96 (32.29%), Postives = 48/96 (50.00%), Query Frame = 1
Query:   19 VFSASELEALREMVEGFGTYNTALGDVTA-KESIGEGGKM-GTAACDHPLLVPGGVNGSECKFPGRLDTALSYVRHGGHHGVKEPFEVMATRALTF 300
            V++  E +AL + V     Y  +  D T  +E IGE   +     C HPL+ P   N ++C F  R+D    Y+  GG   +KEP++ +  R L+F
Sbjct:  172 VWTPQEEQALLQAVRQHRVYRCSTKDSTPLQEDIGEAHDLIPGVGCPHPLMQPN-RNDTKCIFAPRMDIGRHYIATGGRRALKEPYQRLVNRLLSF 266          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig85746.19995.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6B2L527_9EUKA9.330e-1237.70Uncharacterized protein n=1 Tax=Arcella intermedia... [more]
E4X8I0_OIKDI9.460e-1035.48Uncharacterized protein n=1 Tax=Oikopleura dioica ... [more]
E4Y3X9_OIKDI2.680e-934.68Uncharacterized protein n=1 Tax=Oikopleura dioica ... [more]
F2U4N7_SALR51.250e-833.33Uncharacterized protein n=1 Tax=Salpingoeca rosett... [more]
A0A7S4MSZ5_9EUKA2.760e-740.85Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A6G0V1A0_9BILA6.150e-634.74Uncharacterized protein n=1 Tax=Halicephalobus sp.... [more]
A9UU03_MONBE4.090e-532.29Predicted protein n=1 Tax=Monosiga brevicollis Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig85746contigM-pyrifera_M_contig85746:495..857 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.5
Seed ortholog evalue6.4e-07
Seed eggNOG ortholog946362.XP_004995839.1
Hectar predicted targeting categoryother localisation
EggNOG OGs2CI4G@1,2SEN1@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size363
Cds size363
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816767.680196-CDS-M-pyrifera_M_contig85746:494..8571622816767.680196-CDS-M-pyrifera_M_contig85746:494..857Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85746 495..857 +
1692278166.6023817-CDS-M-pyrifera_M_contig85746:494..8571692278166.6023817-CDS-M-pyrifera_M_contig85746:494..857Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85746 495..857 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig85746.19995.1prot_M-pyrifera_M_contig85746.19995.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig85746 495..857 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig85746.19995.1

>prot_M-pyrifera_M_contig85746.19995.1 ID=prot_M-pyrifera_M_contig85746.19995.1|Name=mRNA_M-pyrifera_M_contig85746.19995.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=121bp
YHYATEVFSASELEALREMVEGFGTYNTALGDVTAKESIGEGGKMGTAAC
DHPLLVPGGVNGSECKFPGRLDTALSYVRHGGHHGVKEPFEVMATRALTF
LSYNRDGFLSDPKSPVQHLFQ
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mRNA from alignment at M-pyrifera_M_contig85746:495..857+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig85746.19995.1 ID=mRNA_M-pyrifera_M_contig85746.19995.1|Name=mRNA_M-pyrifera_M_contig85746.19995.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=363bp|location=Sequence derived from alignment at M-pyrifera_M_contig85746:495..857+ (Macrocystis pyrifera P11B4 male)
TACCATTACGCCACTGAGGTGTTTTCTGCGTCGGAATTGGAGGCGCTTCG GGAGATGGTGGAGGGCTTTGGGACGTACAACACTGCTCTGGGCGACGTAA CGGCGAAAGAGAGCATTGGTGAGGGTGGGAAGATGGGGACTGCGGCGTGT GACCACCCTTTGTTGGTTCCTGGGGGTGTGAACGGGAGTGAGTGCAAGTT TCCTGGTCGTCTTGACACTGCGCTGTCGTACGTGCGTCACGGAGGGCACC ACGGGGTGAAAGAGCCGTTTGAAGTGATGGCGACGCGAGCACTCACCTTC CTGTCGTACAACCGAGACGGGTTTCTCTCTGACCCAAAGTCGCCAGTGCA GCACCTGTTCCAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig85746:495..857+

>mRNA_M-pyrifera_M_contig85746.19995.1 ID=mRNA_M-pyrifera_M_contig85746.19995.1|Name=mRNA_M-pyrifera_M_contig85746.19995.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=726bp|location=Sequence derived from alignment at M-pyrifera_M_contig85746:495..857+ (Macrocystis pyrifera P11B4 male)
TACCATTACGCCACTGAGGTGTTTTCTGCGTCGGAATTGGAGGCGCTTCG
GGAGATGGTGGAGGGCTTTGGGACGTACAACACTGCTCTGGGCGACGTAA
CGGCGAAAGAGAGCATTGGTGAGGGTGGGAAGATGGGGACTGCGGCGTGT
GACCACCCTTTGTTGGTTCCTGGGGGTGTGAACGGGAGTGAGTGCAAGTT
TCCTGGTCGTCTTGACACTGCGCTGTCGTACGTGCGTCACGGAGGGCACC
ACGGGGTGAAAGAGCCGTTTGAAGTGATGGCGACGCGAGCACTCACCTTC
CTGTCGTACAACCGAGACGGGTTTCTCTCTGACCCAAAGTCGCCAGTGCA
GCACCTGTTCCAATACCATTACGCCACTGAGGTGTTTTCTGCGTCGGAAT
TGGAGGCGCTTCGGGAGATGGTGGAGGGCTTTGGGACGTACAACACTGCT
CTGGGCGACGTAACGGCGAAAGAGAGCATTGGTGAGGGTGGGAAGATGGG
GACTGCGGCGTGTGACCACCCTTTGTTGGTTCCTGGGGGTGTGAACGGGA
GTGAGTGCAAGTTTCCTGGTCGTCTTGACACTGCGCTGTCGTACGTGCGT
CACGGAGGGCACCACGGGGTGAAAGAGCCGTTTGAAGTGATGGCGACGCG
AGCACTCACCTTCCTGTCGTACAACCGAGACGGGTTTCTCTCTGACCCAA
AGTCGCCAGTGCAGCACCTGTTCCAA
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