mRNA_M-pyrifera_M_contig85700.19981.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig85700.19981.1
Unique NamemRNA_M-pyrifera_M_contig85700.19981.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig85700.19981.1 vs. uniprot
Match: A0A6H5JRE2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRE2_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 2.000e-16
Identity = 40/84 (47.62%), Postives = 55/84 (65.48%), Query Frame = 1 
Query:    1 IMDKDGTLLRDQARIRERWAGHYHKLLSTKSLKLDPTIIDLVPPRPLKLSFGNEPSIDEMMEAVKGMSNWKAVGPDGLPVEVLK 252
            I D+DG +LRD    R+RWA  +HKLL+T+S  +D    D V   P  +   + PS+ E+ EAV+GM+N KAVGPD LP E++K
Sbjct:   15 IKDEDGKVLRDPTLTRQRWARWFHKLLNTRSPTIDLHATDRVKQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPDDLPAELIK 98
[Close]
BLAST of mRNA_M-pyrifera_M_contig85700.19981.1 vs. uniprot
Match: A0A6H5KE31_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE31_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 6.920e-15
Identity = 41/84 (48.81%), Postives = 55/84 (65.48%), Query Frame = 1 
Query:    1 IMDKDGTLLRDQARIRERWAGHYHKLLSTKSLKLDPTIIDLVPPRPLKLSFGNEPSIDEMMEAVKGMSNWKAVGPDGLPVEVLK 252
            I D+DG +LRD    R+RWA  +HKLL+TKS  +D    D V   P  +   + PS+ E+ EAV+GM+N KAVGPD LP E++K
Sbjct:   15 IKDEDGKVLRDPTLTRQRWARWFHKLLNTKSPTIDLHATDRVKQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPDDLPAELIK 98
[Close]
BLAST of mRNA_M-pyrifera_M_contig85700.19981.1 vs. uniprot
Match: A0A6H5JY74_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY74_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 6.950e-15
Identity = 41/84 (48.81%), Postives = 55/84 (65.48%), Query Frame = 1 
Query:    1 IMDKDGTLLRDQARIRERWAGHYHKLLSTKSLKLDPTIIDLVPPRPLKLSFGNEPSIDEMMEAVKGMSNWKAVGPDGLPVEVLK 252
            I D+DG +LRD    R+RWA  +HKLL+TKS  +D    D V   P  +   + PS+ E+ EAV+GM+N KAVGPD LP E++K
Sbjct:  313 IKDEDGKVLRDPTLTRQRWARWFHKLLNTKSPTIDLHATDRVKQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPDDLPAELIK 396
[Close]
BLAST of mRNA_M-pyrifera_M_contig85700.19981.1 vs. uniprot
Match: A0A6H5KKB2_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKB2_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 7.140e-15
Identity = 41/84 (48.81%), Postives = 55/84 (65.48%), Query Frame = 1 
Query:    1 IMDKDGTLLRDQARIRERWAGHYHKLLSTKSLKLDPTIIDLVPPRPLKLSFGNEPSIDEMMEAVKGMSNWKAVGPDGLPVEVLK 252
            I D+DG +LRD    R+RWA  +HKLL+TKS  +D    D V   P  +   + PS+ E+ EAV+GM+N KAVGPD LP E++K
Sbjct:   15 IKDEDGKVLRDPTLTRQRWARWFHKLLNTKSPTIDLHATDRVKQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPDDLPAELIK 98
[Close]
BLAST of mRNA_M-pyrifera_M_contig85700.19981.1 vs. uniprot
Match: A0A6H5K8Z5_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Z5_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 7.240e-15
Identity = 41/84 (48.81%), Postives = 55/84 (65.48%), Query Frame = 1 
Query:    1 IMDKDGTLLRDQARIRERWAGHYHKLLSTKSLKLDPTIIDLVPPRPLKLSFGNEPSIDEMMEAVKGMSNWKAVGPDGLPVEVLK 252
            I D+DG +LRD    R+RWA  +HKLL+TKS  +D    D V   P  +   + PS+ E+ EAV+GM+N KAVGPD LP E++K
Sbjct:  293 IKDEDGKVLRDPTLTRQRWARWFHKLLNTKSPTIDLHATDRVKQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPDDLPAELIK 376
[Close]
BLAST of mRNA_M-pyrifera_M_contig85700.19981.1 vs. uniprot
Match: A0A6H5JUB0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUB0_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 7.260e-15
Identity = 41/84 (48.81%), Postives = 55/84 (65.48%), Query Frame = 1 
Query:    1 IMDKDGTLLRDQARIRERWAGHYHKLLSTKSLKLDPTIIDLVPPRPLKLSFGNEPSIDEMMEAVKGMSNWKAVGPDGLPVEVLK 252
            I D+DG +LRD    R+RWA  +HKLL+TKS  +D    D V   P  +   + PS+ E+ EAV+GM+N KAVGPD LP E++K
Sbjct:   78 IKDEDGKVLRDPTLTRQRWARWFHKLLNTKSPTIDLHATDRVKQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPDDLPAELIK 161
[Close]
BLAST of mRNA_M-pyrifera_M_contig85700.19981.1 vs. uniprot
Match: A0A6H5KC90_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC90_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 7.270e-15
Identity = 41/84 (48.81%), Postives = 55/84 (65.48%), Query Frame = 1 
Query:    1 IMDKDGTLLRDQARIRERWAGHYHKLLSTKSLKLDPTIIDLVPPRPLKLSFGNEPSIDEMMEAVKGMSNWKAVGPDGLPVEVLK 252
            I D+DG +LRD    R+RWA  +HKLL+TKS  +D    D V   P  +   + PS+ E+ EAV+GM+N KAVGPD LP E++K
Sbjct:  431 IKDEDGKVLRDPTLTRQRWARWFHKLLNTKSPTIDLHATDRVKQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPDDLPAELIK 514
[Close]
BLAST of mRNA_M-pyrifera_M_contig85700.19981.1 vs. uniprot
Match: A0A6H5JQH5_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQH5_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 7.290e-15
Identity = 41/84 (48.81%), Postives = 55/84 (65.48%), Query Frame = 1 
Query:    1 IMDKDGTLLRDQARIRERWAGHYHKLLSTKSLKLDPTIIDLVPPRPLKLSFGNEPSIDEMMEAVKGMSNWKAVGPDGLPVEVLK 252
            I D+DG +LRD    R+RWA  +HKLL+TKS  +D    D V   P  +   + PS+ E+ EAV+GM+N KAVGPD LP E++K
Sbjct:  543 IKDEDGKVLRDPTLTRQRWARWFHKLLNTKSPTIDLHATDRVKQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPDDLPAELIK 626
[Close]
BLAST of mRNA_M-pyrifera_M_contig85700.19981.1 vs. uniprot
Match: A0A6H5KDI8_9PHAE (Reverse transcriptase domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDI8_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 7.310e-15
Identity = 41/84 (48.81%), Postives = 55/84 (65.48%), Query Frame = 1 
Query:    1 IMDKDGTLLRDQARIRERWAGHYHKLLSTKSLKLDPTIIDLVPPRPLKLSFGNEPSIDEMMEAVKGMSNWKAVGPDGLPVEVLK 252
            I D+DG +LRD    R+RWA  +HKLL+TKS  +D    D V   P  +   + PS+ E+ EAV+GM+N KAVGPD LP E++K
Sbjct:  664 IKDEDGKVLRDPTLTRQRWARWFHKLLNTKSPTIDLHATDRVKQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPDDLPAELIK 747
[Close]
BLAST of mRNA_M-pyrifera_M_contig85700.19981.1 vs. uniprot
Match: A0A6H5KDU4_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDU4_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 1.830e-14
Identity = 41/84 (48.81%), Postives = 56/84 (66.67%), Query Frame = 1 
Query:    1 IMDKDGTLLRDQARIRERWAGHYHKLLSTKSLKLDPTIIDLVPPRPLKLSFGNEPSIDEMMEAVKGMSNWKAVGPDGLPVEVLK 252
            I D+DG +LRD   IR+RWA  +HKLL+TKS ++D    D V   P  +   + PS+ E+ EAV+ M+N KAVGPD LP E++K
Sbjct:  466 IKDEDGKVLRDPTFIRQRWARWFHKLLNTKSPRIDLHAADKVKRWPTCVPLDDIPSLLEVEEAVREMANRKAVGPDDLPAELIK 549
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig85700.19981.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JRE2_9PHAE2.000e-1647.62Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KE31_9PHAE6.920e-1548.81Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JY74_9PHAE6.950e-1548.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KKB2_9PHAE7.140e-1548.81Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K8Z5_9PHAE7.240e-1548.81Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JUB0_9PHAE7.260e-1548.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KC90_9PHAE7.270e-1548.81Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JQH5_9PHAE7.290e-1548.81Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KDI8_9PHAE7.310e-1548.81Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KDU4_9PHAE1.830e-1448.81Reverse transcriptase domain-containing protein (F... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig85700contigM-pyrifera_M_contig85700:575..826 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score67.0
Seed ortholog evalue4.7e-09
Seed eggNOG ortholog7897.ENSLACP00000008318
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Ribonuclease H protein
EggNOG OGs39TZY@33154,3BHR3@33208,3CUIP@33213,48DAM@7711,KOG1075@1,KOG1075@2759
COG Functional cat.S
Best tax levelChordata
Best eggNOG OGNA|NA|NA
Exons1
Model size252
Cds size249
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816767.149972-UTR-M-pyrifera_M_contig85700:574..5771622816767.149972-UTR-M-pyrifera_M_contig85700:574..577Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig85700 575..577 +
1692278166.3057175-UTR-M-pyrifera_M_contig85700:574..5771692278166.3057175-UTR-M-pyrifera_M_contig85700:574..577Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig85700 575..577 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816767.161903-CDS-M-pyrifera_M_contig85700:577..8261622816767.161903-CDS-M-pyrifera_M_contig85700:577..826Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85700 578..826 +
1692278166.3187935-CDS-M-pyrifera_M_contig85700:577..8261692278166.3187935-CDS-M-pyrifera_M_contig85700:577..826Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85700 578..826 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig85700.19981.1prot_M-pyrifera_M_contig85700.19981.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig85700 578..826 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig85700.19981.1

>prot_M-pyrifera_M_contig85700.19981.1 ID=prot_M-pyrifera_M_contig85700.19981.1|Name=mRNA_M-pyrifera_M_contig85700.19981.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=83bp
MDKDGTLLRDQARIRERWAGHYHKLLSTKSLKLDPTIIDLVPPRPLKLSF
GNEPSIDEMMEAVKGMSNWKAVGPDGLPVEVLK
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mRNA from alignment at M-pyrifera_M_contig85700:575..826+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig85700.19981.1 ID=mRNA_M-pyrifera_M_contig85700.19981.1|Name=mRNA_M-pyrifera_M_contig85700.19981.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=252bp|location=Sequence derived from alignment at M-pyrifera_M_contig85700:575..826+ (Macrocystis pyrifera P11B4 male)
ATCATGGACAAGGATGGCACGCTGTTGCGAGATCAAGCGCGAATTCGTGA
AAGATGGGCGGGGCACTACCACAAACTATTGAGCACGAAATCGCTGAAAC
TTGACCCCACGATCATCGACCTAGTGCCACCACGACCGCTGAAACTATCC
TTTGGAAATGAACCATCCATTGACGAGATGATGGAAGCAGTGAAGGGTAT
GTCAAACTGGAAAGCCGTTGGACCAGATGGTCTCCCGGTCGAAGTACTGA
AA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig85700:575..826+

>mRNA_M-pyrifera_M_contig85700.19981.1 ID=mRNA_M-pyrifera_M_contig85700.19981.1|Name=mRNA_M-pyrifera_M_contig85700.19981.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=498bp|location=Sequence derived from alignment at M-pyrifera_M_contig85700:575..826+ (Macrocystis pyrifera P11B4 male)
ATGGACAAGGATGGCACGCTGTTGCGAGATCAAGCGCGAATTCGTGAAAG
ATGGGCGGGGCACTACCACAAACTATTGAGCACGAAATCGCTGAAACTTG
ACCCCACGATCATCGACCTAGTGCCACCACGACCGCTGAAACTATCCTTT
GGAAATGAACCATCCATTGACGAGATGATGGAAGCAGTGAAGGGTATGTC
AAACTGGAAAGCCGTTGGACCAGATGGTCTCCCGGTCGAAGTACTGAAAA
TGGACAAGGATGGCACGCTGTTGCGAGATCAAGCGCGAATTCGTGAAAGA
TGGGCGGGGCACTACCACAAACTATTGAGCACGAAATCGCTGAAACTTGA
CCCCACGATCATCGACCTAGTGCCACCACGACCGCTGAAACTATCCTTTG
GAAATGAACCATCCATTGACGAGATGATGGAAGCAGTGAAGGGTATGTCA
AACTGGAAAGCCGTTGGACCAGATGGTCTCCCGGTCGAAGTACTGAAA
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