mRNA_M-pyrifera_M_contig85504.19933.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig85504.19933.1
Unique NamemRNA_M-pyrifera_M_contig85504.19933.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig85504.19933.1 vs. uniprot
Match: A0A2E1AY88_9FLAO (Uncharacterized protein n=1 Tax=Muricauda sp. TaxID=192149 RepID=A0A2E1AY88_9FLAO)

HSP 1 Score: 197 bits (500), Expect = 9.010e-56
Identity = 92/140 (65.71%), Postives = 116/140 (82.86%), Query Frame = 1
Query:    1 VGRIYKTIFILKYLDDLTLRQTTEKVLNRIEQSHQFAKAIFFGNNQELKQSTKEEQEIAVGARHLIQNAIVLWNYLKISEKLTQCKSKKEFDSILELVKSSSIMTWQHINIHGEYDFALLYANGSDPTFQMDKILSLDLN 420
            VGRI+KT F+LKY+D++ LR++TEK LNRIE+SHQFAKAIFFGNNQEL+  TKEEQE+ +  RHLIQNAIVLWNYLKI +KL++C +K EF  IL  +K+SSIMTWQHINIHGEY+F  L+ NG   +F+ DKI  L+++
Sbjct:  894 VGRIFKTYFLLKYMDEVDLRKSTEKSLNRIEKSHQFAKAIFFGNNQELRAGTKEEQEVIIATRHLIQNAIVLWNYLKIGDKLSKCSNKLEFTEILSALKNSSIMTWQHINIHGEYNFQKLFHNGEMNSFEFDKIKDLEIS 1033          
BLAST of mRNA_M-pyrifera_M_contig85504.19933.1 vs. uniprot
Match: UPI00094B9214 (Tn3 family transposase n=1 Tax=Tenacibaculum agarivorans TaxID=1908389 RepID=UPI00094B9214)

HSP 1 Score: 192 bits (488), Expect = 3.900e-54
Identity = 88/139 (63.31%), Postives = 115/139 (82.73%), Query Frame = 1
Query:    1 VGRIYKTIFILKYLDDLTLRQTTEKVLNRIEQSHQFAKAIFFGNNQELKQSTKEEQEIAVGARHLIQNAIVLWNYLKISEKLTQCKSKKEFDSILELVKSSSIMTWQHINIHGEYDFALLYANGSDPTFQMDKILSLDL 417
            VGRI+KT FILKYLD++ LR++TEK LNR+E SHQFAKAIFFGNNQ +K  +KEEQEI V  RHLIQN+IVLWNYLKIS++L++CKSK EF+ +L ++K+ SIM+WQHINIHGEY+F  L+A G + +   +K+  L++
Sbjct:  894 VGRIFKTYFILKYLDEVDLRKSTEKALNRVENSHQFAKAIFFGNNQNIKYGSKEEQEIIVATRHLIQNSIVLWNYLKISDELSKCKSKAEFEKMLSIIKNGSIMSWQHINIHGEYNFQKLFAKGENNSLDFNKLKQLNI 1032          
BLAST of mRNA_M-pyrifera_M_contig85504.19933.1 vs. uniprot
Match: A0A1X7IGJ9_9BACT (Transposase and inactivated derivatives, TnpA family n=1 Tax=Marivirga sericea TaxID=1028 RepID=A0A1X7IGJ9_9BACT)

HSP 1 Score: 186 bits (473), Expect = 4.200e-52
Identity = 93/138 (67.39%), Postives = 112/138 (81.16%), Query Frame = 1
Query:    4 GRIYKTIFILKYLDDLTLRQTTEKVLNRIEQSHQFAKAIFFGNNQELKQSTKEEQEIAVGARHLIQNAIVLWNYLKISEKLTQCKSKKEFDSILELVKSSSIMTWQHINIHGEYDFALLYANGSDPTFQMDKILSLDL 417
            GRIYKTIFIL+YL++  LRQ  EK LNR+EQSHQFA+AIFFGNNQE +  TKEEQEIAV  RHLIQNAIVLWNYL IS++LT+    KE +SIL +V+ SSIMTWQHIN+HGEYDF  +  N S  TF +++IL++DL
Sbjct:  887 GRIYKTIFILRYLNETPLRQGIEKQLNRVEQSHQFARAIFFGNNQEFRVDTKEEQEIAVSCRHLIQNAIVLWNYLNISDQLTKITDNKERESILNIVEKSSIMTWQHINMHGEYDFEKMNNNKS--TFNLEEILNMDL 1022          
BLAST of mRNA_M-pyrifera_M_contig85504.19933.1 vs. uniprot
Match: E6X7L2_CELAD (Transposase Tn3 family protein n=1 Tax=Cellulophaga algicola (strain DSM 14237 / IC166 / ACAM 630) TaxID=688270 RepID=E6X7L2_CELAD)

HSP 1 Score: 186 bits (473), Expect = 4.200e-52
Identity = 95/140 (67.86%), Postives = 110/140 (78.57%), Query Frame = 1
Query:    1 VGRIYKTIFILKYLDDLTLRQTTEKVLNRIEQSHQFAKAIFFGNNQELKQSTKEEQEIAVGARHLIQNAIVLWNYLKISEKLTQCKSKKEFDSILELVKSSSIMTWQHINIHGEYDFALLYANGSDPTFQMDKILSLDLN 420
            +GRI+K+IFIL+YLD+  LRQ  EK LNRIEQSHQFAKAIFFGNNQE K  TKEEQEIAVG RHLIQNAIVLWNYL ISEKL++   + E+  IL    +SSIMTWQHIN+HGEYDF +  A      F ++KILS+DLN
Sbjct:  888 MGRIFKSIFILRYLDERPLRQGIEKQLNRIEQSHQFAKAIFFGNNQEFKVETKEEQEIAVGCRHLIQNAIVLWNYLFISEKLSEIIEEDEYKKILNAFSNSSIMTWQHINLHGEYDFEIAKAT---TLFDLEKILSMDLN 1024          
BLAST of mRNA_M-pyrifera_M_contig85504.19933.1 vs. uniprot
Match: UPI0013D6ED9F (Tn3 family transposase n=1 Tax=Flagellimonas sp. CMM7 TaxID=2654676 RepID=UPI0013D6ED9F)

HSP 1 Score: 186 bits (471), Expect = 7.990e-52
Identity = 88/140 (62.86%), Postives = 113/140 (80.71%), Query Frame = 1
Query:    1 VGRIYKTIFILKYLDDLTLRQTTEKVLNRIEQSHQFAKAIFFGNNQELKQSTKEEQEIAVGARHLIQNAIVLWNYLKISEKLTQCKSKKEFDSILELVKSSSIMTWQHINIHGEYDFALLYANGSDPTFQMDKILSLDLN 420
            +GRI+KT FILKY+D+L LR++TEK LNRIE SHQFAKAIFFGNNQ +K  +KEEQE+ V  RHLIQN IVLWNYLKISE+L++C SK   + IL +VK+ SIMTWQHINIHGEY+F  L+++G   + + +KI  L+++
Sbjct:  894 IGRIFKTYFILKYMDELDLRKSTEKALNRIENSHQFAKAIFFGNNQSIKAGSKEEQEVIVATRHLIQNVIVLWNYLKISERLSKCDSKG-VEEILSIVKNGSIMTWQHINIHGEYNFQRLFSDGEKSSLEFEKIKQLNID 1032          
BLAST of mRNA_M-pyrifera_M_contig85504.19933.1 vs. uniprot
Match: UPI000999CE05 (Tn3 family transposase n=2 Tax=Weeksellaceae TaxID=2762318 RepID=UPI000999CE05)

HSP 1 Score: 173 bits (439), Expect = 2.160e-50
Identity = 84/140 (60.00%), Postives = 109/140 (77.86%), Query Frame = 1
Query:    1 VGRIYKTIFILKYLDDLTLRQTTEKVLNRIEQSHQFAKAIFFGNNQELKQSTKEEQEIAVGARHLIQNAIVLWNYLKISEKLTQCKSKKEFDSILELVKSSSIMTWQHINIHGEYDFALLYANGSDPTFQMDKILSLDLN 420
            +GRI+KT+F+L+Y D+ +LRQ  EK LN+IE SH FAKA+FFGNNQE K  TKEEQ+IAV  RHLIQNAI+LWNYL IS KL++ + K++    +EL+K+SSIMTWQH+N+HGEYDF +   +   P F M KI SL++N
Sbjct:  236 IGRIHKTLFLLRYFDEPSLRQNIEKQLNKIELSHLFAKAVFFGNNQEFKYETKEEQKIAVACRHLIQNAIILWNYLFISNKLSEIEQKEKIQENIELMKNSSIMTWQHVNMHGEYDFVI---DIEKPPFDMIKINSLNIN 372          
BLAST of mRNA_M-pyrifera_M_contig85504.19933.1 vs. uniprot
Match: UPI0016263A60 (Tn3 family transposase n=1 Tax=Chryseobacterium sp. C3 TaxID=2761532 RepID=UPI0016263A60)

HSP 1 Score: 180 bits (456), Expect = 8.490e-50
Identity = 89/140 (63.57%), Postives = 108/140 (77.14%), Query Frame = 1
Query:    1 VGRIYKTIFILKYLDDLTLRQTTEKVLNRIEQSHQFAKAIFFGNNQELKQSTKEEQEIAVGARHLIQNAIVLWNYLKISEKLTQCKSKKEFDSILELVKSSSIMTWQHINIHGEYDFALLYANGSDPTFQMDKILSLDLN 420
            +GRI+KTIF+L+Y D+  LRQ  EK LN+IE SH FAKA+FFGNNQE K  TKEEQEIAV  RHLIQNAI+LWNYL IS+KL++ K + E    +EL+K+SSIMTWQH+N+HGEYDF +   N   P F MDKI SL +N
Sbjct:  886 IGRIHKTIFLLRYFDEPPLRQNIEKQLNKIELSHLFAKAVFFGNNQEFKYETKEEQEIAVACRHLIQNAIILWNYLFISDKLSEIKEEDEIRKNIELMKNSSIMTWQHVNMHGEYDFII---NTDKPPFNMDKINSLIIN 1022          
BLAST of mRNA_M-pyrifera_M_contig85504.19933.1 vs. uniprot
Match: A0A1U7PTH4_9FLAO (Transposase and inactivated derivatives, TnpA family n=1 Tax=Epilithonimonas bovis DSM 19482 TaxID=1121284 RepID=A0A1U7PTH4_9FLAO)

HSP 1 Score: 176 bits (447), Expect = 1.410e-48
Identity = 87/140 (62.14%), Postives = 108/140 (77.14%), Query Frame = 1
Query:    1 VGRIYKTIFILKYLDDLTLRQTTEKVLNRIEQSHQFAKAIFFGNNQELKQSTKEEQEIAVGARHLIQNAIVLWNYLKISEKLTQCKSKKEFDSILELVKSSSIMTWQHINIHGEYDFALLYANGSDPTFQMDKILSLDLN 420
            +GRI+KTIF+L+Y D+  LRQ  EK LN+IE SH FAKA+FFGNNQE K  TKEEQEI V  RHLIQNAI+LWNYL IS+KL++ K ++E    +EL+K+SSIMTWQH+N+HGEYDF +   +   P F MDKI SL +N
Sbjct:  886 IGRIHKTIFLLRYYDEPPLRQNIEKQLNKIELSHLFAKAVFFGNNQEFKYETKEEQEIVVACRHLIQNAIILWNYLFISDKLSEIKEEEEVMKNIELMKNSSIMTWQHVNMHGEYDFII---DVEKPPFDMDKINSLKIN 1022          
BLAST of mRNA_M-pyrifera_M_contig85504.19933.1 vs. uniprot
Match: A0A3B7BIP4_9FLAO (Tn3 family transposase n=4 Tax=unclassified Aquimarina TaxID=2627091 RepID=A0A3B7BIP4_9FLAO)

HSP 1 Score: 174 bits (442), Expect = 6.690e-48
Identity = 82/139 (58.99%), Postives = 108/139 (77.70%), Query Frame = 1
Query:    1 VGRIYKTIFILKYLDDLTLRQTTEKVLNRIEQSHQFAKAIFFGNNQELKQSTKEEQEIAVGARHLIQNAIVLWNYLKISEKLTQCKSKKEFDSILELVKSSSIMTWQHINIHGEYDFALLYANGSDPTFQMDKILSLDL 417
            +GRIYKTIF+L+Y  +  LRQ  EK LN++E SH FAKA+FFGNNQE K STKEEQEIA+  RHLIQN+I+LWNYL ISEKL++ +SK+E+D I++++K SS+MTWQHIN+HGEYDF +   +  +  F +  IL   +
Sbjct:  888 LGRIYKTIFLLRYYSETPLRQAIEKQLNKVELSHLFAKAVFFGNNQEFKVSTKEEQEIALSCRHLIQNSIILWNYLFISEKLSKIESKQEYDRIIDILKQSSVMTWQHINMHGEYDFEI---SNKESKFDLKSILEFQI 1023          
BLAST of mRNA_M-pyrifera_M_contig85504.19933.1 vs. uniprot
Match: UPI00135DCB1D (Tn3 family transposase n=1 Tax=Chryseobacterium TaxID=59732 RepID=UPI00135DCB1D)

HSP 1 Score: 174 bits (441), Expect = 9.130e-48
Identity = 85/140 (60.71%), Postives = 109/140 (77.86%), Query Frame = 1
Query:    1 VGRIYKTIFILKYLDDLTLRQTTEKVLNRIEQSHQFAKAIFFGNNQELKQSTKEEQEIAVGARHLIQNAIVLWNYLKISEKLTQCKSKKEFDSILELVKSSSIMTWQHINIHGEYDFALLYANGSDPTFQMDKILSLDLN 420
            +GRI+KT+F+L+Y D+  LRQ+ EK LN+IE SH FAKA+FFGNNQE K  TKEEQEIAV  RHLIQNAI+LWNYL IS KL++ + K++    +EL+K+SSIMTWQH+N+HGEYDF +   +   P F M KI SL++N
Sbjct:  886 IGRIHKTLFLLRYFDEPYLRQSIEKQLNKIELSHLFAKAVFFGNNQEFKYETKEEQEIAVACRHLIQNAIILWNYLFISNKLSEIEQKEKIQENIELMKNSSIMTWQHVNMHGEYDFVI---DIEKPPFDMIKINSLNIN 1022          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig85504.19933.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E1AY88_9FLAO9.010e-5665.71Uncharacterized protein n=1 Tax=Muricauda sp. TaxI... [more]
UPI00094B92143.900e-5463.31Tn3 family transposase n=1 Tax=Tenacibaculum agari... [more]
A0A1X7IGJ9_9BACT4.200e-5267.39Transposase and inactivated derivatives, TnpA fami... [more]
E6X7L2_CELAD4.200e-5267.86Transposase Tn3 family protein n=1 Tax=Cellulophag... [more]
UPI0013D6ED9F7.990e-5262.86Tn3 family transposase n=1 Tax=Flagellimonas sp. C... [more]
UPI000999CE052.160e-5060.00Tn3 family transposase n=2 Tax=Weeksellaceae TaxID... [more]
UPI0016263A608.490e-5063.57Tn3 family transposase n=1 Tax=Chryseobacterium sp... [more]
A0A1U7PTH4_9FLAO1.410e-4862.14Transposase and inactivated derivatives, TnpA fami... [more]
A0A3B7BIP4_9FLAO6.690e-4858.99Tn3 family transposase n=4 Tax=unclassified Aquima... [more]
UPI00135DCB1D9.130e-4860.71Tn3 family transposase n=1 Tax=Chryseobacterium Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig85504contigM-pyrifera_M_contig85504:2..424 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score186.4
Seed ortholog evalue9e-45
Seed eggNOG ortholog688270.Celal_3458
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Domain of unknown function (DUF4158)
EggNOG OGs1I8NZ@117743,4NQZ0@976,COG4644@1,COG4644@2
COG Functional cat.L
Best tax levelFlavobacteriia
Best eggNOG OGNA|NA|NA
Exons1
Model size423
Cds size423
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816764.488751-CDS-M-pyrifera_M_contig85504:1..4241622816764.488751-CDS-M-pyrifera_M_contig85504:1..424Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85504 2..424 +
1692278164.6932642-CDS-M-pyrifera_M_contig85504:1..4241692278164.6932642-CDS-M-pyrifera_M_contig85504:1..424Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85504 2..424 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig85504.19933.1prot_M-pyrifera_M_contig85504.19933.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig85504 2..424 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig85504.19933.1

>prot_M-pyrifera_M_contig85504.19933.1 ID=prot_M-pyrifera_M_contig85504.19933.1|Name=mRNA_M-pyrifera_M_contig85504.19933.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=141bp
VGRIYKTIFILKYLDDLTLRQTTEKVLNRIEQSHQFAKAIFFGNNQELKQ
STKEEQEIAVGARHLIQNAIVLWNYLKISEKLTQCKSKKEFDSILELVKS
SSIMTWQHINIHGEYDFALLYANGSDPTFQMDKILSLDLN*
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mRNA from alignment at M-pyrifera_M_contig85504:2..424+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig85504.19933.1 ID=mRNA_M-pyrifera_M_contig85504.19933.1|Name=mRNA_M-pyrifera_M_contig85504.19933.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=423bp|location=Sequence derived from alignment at M-pyrifera_M_contig85504:2..424+ (Macrocystis pyrifera P11B4 male)
GTTGGAAGGATTTACAAGACAATTTTCATATTGAAATATTTAGATGACCT AACACTCAGACAGACTACAGAAAAAGTCCTAAACCGAATAGAACAATCTC ATCAATTTGCCAAAGCCATATTTTTCGGAAATAATCAGGAATTAAAACAA AGTACCAAAGAAGAGCAAGAAATAGCGGTTGGGGCTAGACACTTAATTCA AAATGCAATCGTACTTTGGAACTATTTGAAAATATCAGAGAAACTCACAC AATGTAAATCAAAGAAAGAATTCGACTCTATTCTCGAATTAGTTAAAAGC AGCTCAATAATGACATGGCAGCACATAAATATACATGGAGAATATGATTT TGCGCTTCTTTATGCCAATGGATCAGATCCAACATTTCAAATGGATAAAA TTCTGTCTCTTGATTTAAACTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig85504:2..424+

>mRNA_M-pyrifera_M_contig85504.19933.1 ID=mRNA_M-pyrifera_M_contig85504.19933.1|Name=mRNA_M-pyrifera_M_contig85504.19933.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=846bp|location=Sequence derived from alignment at M-pyrifera_M_contig85504:2..424+ (Macrocystis pyrifera P11B4 male)
GTTGGAAGGATTTACAAGACAATTTTCATATTGAAATATTTAGATGACCT
AACACTCAGACAGACTACAGAAAAAGTCCTAAACCGAATAGAACAATCTC
ATCAATTTGCCAAAGCCATATTTTTCGGAAATAATCAGGAATTAAAACAA
AGTACCAAAGAAGAGCAAGAAATAGCGGTTGGGGCTAGACACTTAATTCA
AAATGCAATCGTACTTTGGAACTATTTGAAAATATCAGAGAAACTCACAC
AATGTAAATCAAAGAAAGAATTCGACTCTATTCTCGAATTAGTTAAAAGC
AGCTCAATAATGACATGGCAGCACATAAATATACATGGAGAATATGATTT
TGCGCTTCTTTATGCCAATGGATCAGATCCAACATTTCAAATGGATAAAA
TTCTGTCTCTTGATTTAAACTAAGTTGGAAGGATTTACAAGACAATTTTC
ATATTGAAATATTTAGATGACCTAACACTCAGACAGACTACAGAAAAAGT
CCTAAACCGAATAGAACAATCTCATCAATTTGCCAAAGCCATATTTTTCG
GAAATAATCAGGAATTAAAACAAAGTACCAAAGAAGAGCAAGAAATAGCG
GTTGGGGCTAGACACTTAATTCAAAATGCAATCGTACTTTGGAACTATTT
GAAAATATCAGAGAAACTCACACAATGTAAATCAAAGAAAGAATTCGACT
CTATTCTCGAATTAGTTAAAAGCAGCTCAATAATGACATGGCAGCACATA
AATATACATGGAGAATATGATTTTGCGCTTCTTTATGCCAATGGATCAGA
TCCAACATTTCAAATGGATAAAATTCTGTCTCTTGATTTAAACTAA
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