mRNA_M-pyrifera_M_contig8543.19912.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8543.19912.1
Unique NamemRNA_M-pyrifera_M_contig8543.19912.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8543.19912.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8543contigM-pyrifera_M_contig8543:5499..6135 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size639
Cds size387
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816763.392467-CDS-M-pyrifera_M_contig8543:5498..58851622816763.392467-CDS-M-pyrifera_M_contig8543:5498..5885Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8543 5499..5885 +
1692278164.0915005-CDS-M-pyrifera_M_contig8543:5498..58851692278164.0915005-CDS-M-pyrifera_M_contig8543:5498..5885Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8543 5499..5885 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816763.406403-UTR-M-pyrifera_M_contig8543:5885..61351622816763.406403-UTR-M-pyrifera_M_contig8543:5885..6135Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8543 5886..6135 +
1692278164.1021626-UTR-M-pyrifera_M_contig8543:5885..61351692278164.1021626-UTR-M-pyrifera_M_contig8543:5885..6135Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8543 5886..6135 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8543.19912.1prot_M-pyrifera_M_contig8543.19912.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8543 5499..5885 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8543.19912.1

>prot_M-pyrifera_M_contig8543.19912.1 ID=prot_M-pyrifera_M_contig8543.19912.1|Name=mRNA_M-pyrifera_M_contig8543.19912.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=129bp
LVVPHFRNSIGHKPFAQKVQPLPWGDSYQTLHPAPQSKERSKLPPRTETK
RPNFSVRGRGEQKRSAVSTITDFCPTEKIKIKNTSEQLQNEHGSSLLPLV
YRLPEAYIPVAWFTIPHRTMFVRWRPKK*
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mRNA from alignment at M-pyrifera_M_contig8543:5499..6135+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8543.19912.1 ID=mRNA_M-pyrifera_M_contig8543.19912.1|Name=mRNA_M-pyrifera_M_contig8543.19912.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=637bp|location=Sequence derived from alignment at M-pyrifera_M_contig8543:5499..6135+ (Macrocystis pyrifera P11B4 male)
CTGGTAGTTCCTCACTTCAGGAACTCAATTGGTCACAAACCTTTCGCCCA
AAAAGTGCAACCCCTACCGTGGGGTGACTCATACCAAACCCTACATCCAG
CCCCCCAATCCAAAGAAAGATCTAAACTCCCACCAAGGACTGAAACTAAA
CGACCCAACTTTTCGGTCAGGGGACGGGGCGAGCAAAAACGCTCGGCCGT
TTCTACAATAACCGACTTTTGTCCGACAGAAAAAATAAAAATAAAAAACA
CCAGCGAACAATTGCAAAACGAGCACGGTTCATCTTTGTTGCCCCTCGTT
TACCGTTTACCTGAGGCGTACATACCCGTGGCATGGTTTACGATCCCACA
TCGAACGATGTTCGTTCGTTGGCGGCCTAAAAAATGAGACCTGGTACCTG
CGTACTGGTTTAACATTGGCTGTGCTGGTTGGTGGTTATTGGTCTGAAGG
ATAAAAAAAAAACTACGGCAGTACGAGTAGTATATAGCTGTATGTCTATA
TACTCGTATACTTGCTGCTGTTATTGTTGATGACGACGCAACGTCGGCGG
CTACATCCGAAGCTAACTTTGATTCCGAATATGAAACCGAGTTTTATTCC
GAAACTGAATCCGAATCCAATCCGAAACCAAATCCAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8543:5499..6135+

>mRNA_M-pyrifera_M_contig8543.19912.1 ID=mRNA_M-pyrifera_M_contig8543.19912.1|Name=mRNA_M-pyrifera_M_contig8543.19912.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=774bp|location=Sequence derived from alignment at M-pyrifera_M_contig8543:5499..6135+ (Macrocystis pyrifera P11B4 male)
CTGGTAGTTCCTCACTTCAGGAACTCAATTGGTCACAAACCTTTCGCCCA
AAAAGTGCAACCCCTACCGTGGGGTGACTCATACCAAACCCTACATCCAG
CCCCCCAATCCAAAGAAAGATCTAAACTCCCACCAAGGACTGAAACTAAA
CGACCCAACTTTTCGGTCAGGGGACGGGGCGAGCAAAAACGCTCGGCCGT
TTCTACAATAACCGACTTTTGTCCGACAGAAAAAATAAAAATAAAAAACA
CCAGCGAACAATTGCAAAACGAGCACGGTTCATCTTTGTTGCCCCTCGTT
TACCGTTTACCTGAGGCGTACATACCCGTGGCATGGTTTACGATCCCACA
TCGAACGATGTTCGTTCGTTGGCGGCCTAAAAAATGACTGGTAGTTCCTC
ACTTCAGGAACTCAATTGGTCACAAACCTTTCGCCCAAAAAGTGCAACCC
CTACCGTGGGGTGACTCATACCAAACCCTACATCCAGCCCCCCAATCCAA
AGAAAGATCTAAACTCCCACCAAGGACTGAAACTAAACGACCCAACTTTT
CGGTCAGGGGACGGGGCGAGCAAAAACGCTCGGCCGTTTCTACAATAACC
GACTTTTGTCCGACAGAAAAAATAAAAATAAAAAACACCAGCGAACAATT
GCAAAACGAGCACGGTTCATCTTTGTTGCCCCTCGTTTACCGTTTACCTG
AGGCGTACATACCCGTGGCATGGTTTACGATCCCACATCGAACGATGTTC
GTTCGTTGGCGGCCTAAAAAATGA
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