mRNA_M-pyrifera_M_contig85315.19890.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig85315.19890.1
Unique NamemRNA_M-pyrifera_M_contig85315.19890.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig85315.19890.1 vs. uniprot
Match: A0A2D9C390_9BACT (Uncharacterized protein n=3 Tax=Phycisphaerae TaxID=666505 RepID=A0A2D9C390_9BACT)

HSP 1 Score: 307 bits (786), Expect = 2.150e-96
Identity = 146/220 (66.36%), Postives = 166/220 (75.45%), Query Frame = 1 
Query:    1 YGNSEDELSFWLNRSLLPSSEYVISQPITTNWPGGHLPAFVTLYPWIAQAPMRADPDWESHTRNLLASFGAWTDDHAPSSMTVFSAGTTKPEWGGYNADSISNHPGDITTFPSLMGFGSLGETAPSVGAYHAYRHGLRQEFETGASILYRRSGVDSTYIPPDAGLPDVVIGALGLAELIRPGTTDAVLAIPYRGACVADFASPQGVLDVFDVIEFISAFN 660
            YG +   L+FWL+R+ LP +EYV    +TTNWP  HLPAFV+LYP+IAQ   R    W  H  N LAS GAW DD+AP  MTVFSAGTTKPEWGGY+ADS+S+HPGD+  F SLM F S G+TAPSVGAYHAYRHG RQ F TGAS+LYRRS +D  Y P DAGLPDVVIGALGLAELI+PGT DAVLAIPYR  C AD + P G L+ FDV  F+ AFN
Sbjct:  498 YGEATSALTFWLDRASLPEAEYVSGLSVTTNWPNNHLPAFVSLYPYIAQHATRDSVVWNRHIENSLASHGAWVDDNAPRFMTVFSAGTTKPEWGGYHADSLSDHPGDVAAFTSLMAFSSSGQTAPSVGAYHAYRHGARQSFATGASMLYRRSNIDPAYTPGDAGLPDVVIGALGLAELIKPGTGDAVLAIPYRPECPADLSPPLGELNFFDVSIFLGAFN 717
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BLAST of mRNA_M-pyrifera_M_contig85315.19890.1 vs. uniprot
Match: A0A5M4D8R4_9CYAN (Uncharacterized protein n=1 Tax=Cyanobacteria bacterium CYA TaxID=2484221 RepID=A0A5M4D8R4_9CYAN)

HSP 1 Score: 260 bits (664), Expect = 3.180e-78
Identity = 132/223 (59.19%), Postives = 152/223 (68.16%), Query Frame = 1 
Query:    1 YGNSEDELSFWLNRSLLPSSEYVISQPITTNWPGGHLPAFVTLYPWIAQAPMRADPDWESHTRNLLASFGAWTDDHAPSSMTVFSAGTTKPEW--GGYNADSISNHPGDITTFPSLMGFGSLGETAPSVGAYHAYRHGLRQEFETGASILYRRSGVDSTYIPPDAGLPDVVIGALGLAELIRPGTTDAVLAIPYRG--ACVADFASPQGVLDVFDVIEFISAF 657
            YG S  + + WLNR+  PS+ YV   P+T+N  G    AFV+LY  I Q   R    W  H   LLAS GAWTDD     +TVFSAGTTKP W  GGYNADS+S H GDI+TFPSLM F S G+TAP++GAYHAYRHG R  F +GASILYRRS +D  Y PPDAGLPDV +GALGLAELI PG  DAVLA  + G   C+ + A P GVLD FDV  F+SAF
Sbjct:  519 YGASAGDYAAWLNRTNWPSATYVTGMPVTSNASGNFQAAFVSLYAQIVQRGTRDSSAWTDHATALLASNGAWTDDAQARFLTVFSAGTTKPMWAPGGYNADSLSGHSGDISTFPSLMAFASRGDTAPAIGAYHAYRHGYRATFASGASILYRRSNIDPAYTPPDAGLPDVALGALGLAELIEPGVVDAVLARAFSGHVPCLPEMAPPAGVLDFFDVSAFLSAF 741
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BLAST of mRNA_M-pyrifera_M_contig85315.19890.1 vs. uniprot
Match: UPI001AC55F23 (Uncharacterized protein n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=UPI001AC55F23)

HSP 1 Score: 204 bits (520), Expect = 1.730e-57
Identity = 98/195 (50.26%), Postives = 126/195 (64.62%), Query Frame = 1 
Query:    1 YGNSEDELSF--WLNRSLLPSSEYVISQPITTNWPGGHLPAFVTLYPWIAQAPMRADPDWESHTRNLLASFGAWTDDHAPSSMTVFSAGTTKPEWGGYNADSISNHPGDITTFPSLMGFGSLGETAPSVGAYHAYRHGLRQEFETGASILYRRSGVDSTYIPPDAGLPDVVIGALGLAELIRPGTTDAVLAIPYR 579
            YG +  + ++  WLNR+L P++ Y+   PIT    G H   F+++YP +     RAD  W     N+  S GAWTDD     +TVFSAGTT+ +WGGY+AD++ +HPGDITTF SLMG  +  +  P+  AYHAYR G RQ F TGAS+LYRRS  D  Y P  AGLPDV +GAL L EL+RPG  DAVL+ P +
Sbjct:  513 YGGTASDGAYAAWLNRALWPTASYIPGLPITVIASGQHESTFISVYPALLLPEYRADAAWRGQLGNIRWSAGAWTDDFGARYLTVFSAGTTRSDWGGYHADTLGSHPGDITTFTSLMGLSAFSDATPAAQAYHAYRKGARQAFRTGASLLYRRSDADRAYTPNSAGLPDVALGALALGELMRPGVLDAVLSRPLQ 707
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BLAST of mRNA_M-pyrifera_M_contig85315.19890.1 vs. uniprot
Match: A0A7Y4QJJ6_9BACT (Uncharacterized protein n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A7Y4QJJ6_9BACT)

HSP 1 Score: 191 bits (484), Expect = 2.270e-52
Identity = 96/184 (52.17%), Postives = 116/184 (63.04%), Query Frame = 1 
Query:   31 WLNRSLLPSSEYVISQPITTNWPGGHLPAFVTLYPWIAQAPMRADPDWESHTRNLLASFGAWTDDHAPSSMTVFSAGTTKPEWGGYNADSISNHPGDITTFPSLMGFGSLGETAPSVGAYHAYRHGLRQEFETGASILYRRSGVDSTYIPPDAGLPDVVIGALGLAELIRPGTTDAVLAIPYRG 582
            WLNRSL P ++ V+ + +T N  G    AFV+LYPW+ Q   R    W     NL  S  AW D + P   TVFSAGTT     GYNADS+S+HP DI TFPSLM F   G T P+V AY AYR G RQ F  GAS+LYRRS  D ++ P  AGLPDVV+G +GLAEL++PG  D +LA+   G
Sbjct:  532 WLNRSLWPVAQMVVGKTVTGNGNGQFQAAFVSLYPWLLQKDFRDSTSWSQSVDNLWYSHAAWNDANGPRYFTVFSAGTTPT---GYNADSLSSHPNDIATFPSLMAFCGKGNTLPAVAAYQAYRRGARQTFLGGASMLYRRSNPDPSWQPNSAGLPDVVLGGIGLAELLQPGVVDKLLALDMSG 712
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig85315.19890.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2D9C390_9BACT2.150e-9666.36Uncharacterized protein n=3 Tax=Phycisphaerae TaxI... [more]
A0A5M4D8R4_9CYAN3.180e-7859.19Uncharacterized protein n=1 Tax=Cyanobacteria bact... [more]
UPI001AC55F231.730e-5750.26Uncharacterized protein n=1 Tax=Phycisphaerales ba... [more]
A0A7Y4QJJ6_9BACT2.270e-5252.17Uncharacterized protein n=1 Tax=Verrucomicrobia ba... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig85315contigM-pyrifera_M_contig85315:107..865 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size759
Cds size759
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816761.9865553-CDS-M-pyrifera_M_contig85315:106..8651622816761.9865553-CDS-M-pyrifera_M_contig85315:106..865Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85315 107..865 -
1692278163.2298503-CDS-M-pyrifera_M_contig85315:106..8651692278163.2298503-CDS-M-pyrifera_M_contig85315:106..865Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85315 107..865 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig85315.19890.1prot_M-pyrifera_M_contig85315.19890.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig85315 107..865 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig85315.19890.1

>prot_M-pyrifera_M_contig85315.19890.1 ID=prot_M-pyrifera_M_contig85315.19890.1|Name=mRNA_M-pyrifera_M_contig85315.19890.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=253bp
YGNSEDELSFWLNRSLLPSSEYVISQPITTNWPGGHLPAFVTLYPWIAQA
PMRADPDWESHTRNLLASFGAWTDDHAPSSMTVFSAGTTKPEWGGYNADS
ISNHPGDITTFPSLMGFGSLGETAPSVGAYHAYRHGLRQEFETGASILYR
RSGVDSTYIPPDAGLPDVVIGALGLAELIRPGTTDAVLAIPYRGACVADF
ASPQGVLDVFDVIEFISAFNNLESRADLARPFGTHDIFDVLAFIDAFNMS
CP*
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mRNA from alignment at M-pyrifera_M_contig85315:107..865-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig85315.19890.1 ID=mRNA_M-pyrifera_M_contig85315.19890.1|Name=mRNA_M-pyrifera_M_contig85315.19890.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=759bp|location=Sequence derived from alignment at M-pyrifera_M_contig85315:107..865- (Macrocystis pyrifera P11B4 male)
TATGGAAACAGCGAAGACGAACTCAGCTTCTGGCTCAATCGCTCGCTTCT
GCCTTCTTCTGAATATGTGATCAGTCAACCCATCACAACGAACTGGCCGG
GTGGGCATCTCCCAGCGTTCGTGACGCTCTATCCATGGATCGCTCAAGCG
CCCATGCGTGCAGATCCTGATTGGGAATCGCACACGCGCAATCTGCTCGC
ATCGTTCGGCGCATGGACAGACGATCACGCGCCCTCATCGATGACAGTGT
TCAGCGCCGGGACGACGAAACCCGAGTGGGGGGGATACAACGCTGACTCG
ATCTCGAATCATCCTGGGGATATCACGACATTTCCCTCGCTGATGGGATT
CGGCTCGCTCGGCGAGACAGCGCCGAGTGTCGGCGCGTACCACGCGTATC
GGCATGGATTGCGTCAAGAGTTCGAGACAGGCGCATCGATCCTCTATCGG
CGCTCGGGAGTCGATTCAACATACATCCCTCCCGATGCAGGACTCCCTGA
TGTCGTGATTGGGGCGCTGGGACTCGCAGAGTTGATCCGACCCGGCACGA
CAGACGCGGTGCTCGCGATCCCGTACCGCGGCGCATGTGTTGCGGACTTT
GCTTCGCCGCAGGGAGTGCTCGATGTATTCGATGTCATCGAGTTTATTTC
AGCGTTCAACAACTTGGAATCCCGTGCGGATCTCGCTCGTCCGTTCGGGA
CGCATGACATCTTTGATGTGCTCGCGTTTATCGACGCGTTCAATATGAGC
TGCCCCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig85315:107..865-

>mRNA_M-pyrifera_M_contig85315.19890.1 ID=mRNA_M-pyrifera_M_contig85315.19890.1|Name=mRNA_M-pyrifera_M_contig85315.19890.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1518bp|location=Sequence derived from alignment at M-pyrifera_M_contig85315:107..865- (Macrocystis pyrifera P11B4 male)
TATGGAAACAGCGAAGACGAACTCAGCTTCTGGCTCAATCGCTCGCTTCT
GCCTTCTTCTGAATATGTGATCAGTCAACCCATCACAACGAACTGGCCGG
GTGGGCATCTCCCAGCGTTCGTGACGCTCTATCCATGGATCGCTCAAGCG
CCCATGCGTGCAGATCCTGATTGGGAATCGCACACGCGCAATCTGCTCGC
ATCGTTCGGCGCATGGACAGACGATCACGCGCCCTCATCGATGACAGTGT
TCAGCGCCGGGACGACGAAACCCGAGTGGGGGGGATACAACGCTGACTCG
ATCTCGAATCATCCTGGGGATATCACGACATTTCCCTCGCTGATGGGATT
CGGCTCGCTCGGCGAGACAGCGCCGAGTGTCGGCGCGTACCACGCGTATC
GGCATGGATTGCGTCAAGAGTTCGAGACAGGCGCATCGATCCTCTATCGG
CGCTCGGGAGTCGATTCAACATACATCCCTCCCGATGCAGGACTCCCTGA
TGTCGTGATTGGGGCGCTGGGACTCGCAGAGTTGATCCGACCCGGCACGA
CAGACGCGGTGCTCGCGATCCCGTACCGCGGCGCATGTGTTGCGGACTTT
GCTTCGCCGCAGGGAGTGCTCGATGTATTCGATGTCATCGAGTTTATTTC
AGCGTTCAACAACTTGGAATCCCGTGCGGATCTCGCTCGTCCGTTCGGGA
CGCATGACATCTTTGATGTGCTCGCGTTTATCGACGCGTTCAATATGAGC
TGCCCCTGATATGGAAACAGCGAAGACGAACTCAGCTTCTGGCTCAATCG
CTCGCTTCTGCCTTCTTCTGAATATGTGATCAGTCAACCCATCACAACGA
ACTGGCCGGGTGGGCATCTCCCAGCGTTCGTGACGCTCTATCCATGGATC
GCTCAAGCGCCCATGCGTGCAGATCCTGATTGGGAATCGCACACGCGCAA
TCTGCTCGCATCGTTCGGCGCATGGACAGACGATCACGCGCCCTCATCGA
TGACAGTGTTCAGCGCCGGGACGACGAAACCCGAGTGGGGGGGATACAAC
GCTGACTCGATCTCGAATCATCCTGGGGATATCACGACATTTCCCTCGCT
GATGGGATTCGGCTCGCTCGGCGAGACAGCGCCGAGTGTCGGCGCGTACC
ACGCGTATCGGCATGGATTGCGTCAAGAGTTCGAGACAGGCGCATCGATC
CTCTATCGGCGCTCGGGAGTCGATTCAACATACATCCCTCCCGATGCAGG
ACTCCCTGATGTCGTGATTGGGGCGCTGGGACTCGCAGAGTTGATCCGAC
CCGGCACGACAGACGCGGTGCTCGCGATCCCGTACCGCGGCGCATGTGTT
GCGGACTTTGCTTCGCCGCAGGGAGTGCTCGATGTATTCGATGTCATCGA
GTTTATTTCAGCGTTCAACAACTTGGAATCCCGTGCGGATCTCGCTCGTC
CGTTCGGGACGCATGACATCTTTGATGTGCTCGCGTTTATCGACGCGTTC
AATATGAGCTGCCCCTGA
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