mRNA_M-pyrifera_M_contig85310.19888.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig85310.19888.1
Unique NamemRNA_M-pyrifera_M_contig85310.19888.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig85310.19888.1 vs. uniprot
Match: A0A7C1JU90_9BACT (Sigma-54-dependent Fis family transcriptional regulator n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7C1JU90_9BACT)

HSP 1 Score: 298 bits (764), Expect = 2.030e-96
Identity = 155/244 (63.52%), Postives = 188/244 (77.05%), Query Frame = 1
Query:   31 RIVGSSPVIQRVFKQIALAAQSETSVQVSGETGTGKELVARAIHRHSTRAAAPFVPVNLAEVSIPLAESELFGHTRGAFTGAETDRQGLLEQAHGGTVFLDEVADIPLPLQVKLLRALELGEFRPVGSTRSIHADFRIISASNTDLKQAVAKGRFREDLYFRLAAFEIVLPPLRERREDIPALAQHFLALMQSNSPSPHARFSSKAMAELQERQWRGNVRELRRAIEHALVHARNGEVLPEHLP 762
            R+VG SP +Q VFK+IAL A  +  V + GE+GTGKELVARAIHR+S RA+ PFV VN+A +S  LAESELFGH RGAFTGA+  R+GLLEQA GGT+FLDEVADIP+P+QVKLLRALE GE  PVGS++ +  D RIISA++ +L + VA+GRFR DLY+RL  FEI +PPLR RREDIP L ++FL L+ S + +     S +AMAEL  R W GNVRELR AIEHAL+ AR G + PEHLP
Sbjct:  115 RMVGRSPAMQEVFKRIALVAPVDACVHIRGESGTGKELVARAIHRYSRRASGPFVAVNVASLSPTLAESELFGHVRGAFTGADQARKGLLEQASGGTIFLDEVADIPIPVQVKLLRALEHGEVLPVGSSQPVSVDLRIISATHQNLAELVAEGRFRHDLYYRLVTFEIEIPPLRHRREDIPELTEYFLDLLASKNSAVRPSVSPQAMAELSRRPWYGNVRELRNAIEHALIMARGGSINPEHLP 358          
BLAST of mRNA_M-pyrifera_M_contig85310.19888.1 vs. uniprot
Match: A0A847GQ87_9BACT (Sigma-54-dependent Fis family transcriptional regulator n=1 Tax=Candidatus Anammoximicrobium sp. TaxID=2699742 RepID=A0A847GQ87_9BACT)

HSP 1 Score: 293 bits (750), Expect = 5.920e-94
Identity = 154/246 (62.60%), Postives = 189/246 (76.83%), Query Frame = 1
Query:   34 IVGSSPVIQRVFKQIALAAQSETSVQVSGETGTGKELVARAIHRHSTRAAAPFVPVNLAEVSIPLAESELFGHTRGAFTGAETDRQGLLEQAHGGTVFLDEVADIPLPLQVKLLRALELGEFRPVGSTRSIHADFRIISASNTDLKQAVAKGRFREDLYFRLAAFEIVLPPLRERREDIPALAQHFLALMQSNSPSPHARFSSKAMAELQERQWRGNVRELRRAIEHALVHARNGEVLPEHLPAET 771
            +VG SPV+Q VFK+IALAA SE SV + GE+G+GKEL ARAIHR+S RA  PFV VNLA +S  LAESELFGH RGAFTGAE +  GLL QAHGGT+FLDEVADIPLP QVKLLRALE GEF PVG+ + + +DFR++SA++ +L   +  G+FR DLYFRLAAF I LPPLR+R +DI  LA++FL+L +    SP   FS+  + ELQ R W GNVREL+ A+EHA++ AR+G + PEHLP  T
Sbjct:  135 LVGRSPVMQEVFKRIALAASSEASVLLCGESGSGKELTARAIHRYSRRAEGPFVAVNLASLSSSLAESELFGHARGAFTGAEREHTGLLLQAHGGTLFLDEVADIPLPAQVKLLRALEHGEFVPVGAHQPVKSDFRVVSATHQELLAKIRDGQFRHDLYFRLAAFRIDLPPLRQRPDDIRELAEYFLSLAEQRRESPPG-FSADTLEELQRRPWYGNVRELKNAVEHAVIVARSGSIEPEHLPPPT 379          
BLAST of mRNA_M-pyrifera_M_contig85310.19888.1 vs. uniprot
Match: A0A7C7QYI1_9PLAN (Sigma-54-dependent Fis family transcriptional regulator n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A7C7QYI1_9PLAN)

HSP 1 Score: 289 bits (739), Expect = 2.320e-92
Identity = 158/248 (63.71%), Postives = 189/248 (76.21%), Query Frame = 1
Query:   22 PRERIVGSSPVIQRVFKQIALAAQSETSVQVSGETGTGKELVARAIHRHSTRAAAPFVPVNLAEVSIPLAESELFGHTRGAFTGAETDRQGLLEQAHGGTVFLDEVADIPLPLQVKLLRALELGEFRPVGSTRSIHADFRIISASNTDLKQAVAKGRFREDLYFRLAAFEIVLPPLRERREDIPALAQHFL-ALMQSNSPSPHARFSSKAMAELQERQWRGNVRELRRAIEHALVHARNGEVLPEHLP 762
            P   +VG+SP +QR FK+IALAA S+  V V+GE+GTGKEL ARAIHR+S RA  PFV VN+A +S  + ESELFGH RGAFTGAE  R GLL QAHGGT+FLDEVADIPLP+QVKLLRALE GE  PVG+ R+   DFRI++A++  L++ V +G FR+DLYFRL+AF I LPPLRERREDI +LA HFL A   +  P   A  S +A+AEL+ R W GNVRELR AIEHA + AR G V+PEHLP
Sbjct:  132 PMGGLVGASPAMQRAFKRIALAAASDACVLVTGESGTGKELTARAIHRYSRRAKGPFVAVNVAALSPTVVESELFGHLRGAFTGAEQTRPGLLVQAHGGTLFLDEVADIPLPVQVKLLRALEHGEVLPVGANRAAPTDFRIVAATHQPLEKRVREGSFRQDLYFRLSAFRIDLPPLRERREDIRSLAHHFLHASAPAEGPDCLA-ISEEAIAELERRPWYGNVRELRNAIEHARIVARGGIVMPEHLP 378          
BLAST of mRNA_M-pyrifera_M_contig85310.19888.1 vs. uniprot
Match: A0A517YJP3_9BACT (Nitrogen assimilation regulatory protein n=1 Tax=Anatilimnocola aggregata TaxID=2528021 RepID=A0A517YJP3_9BACT)

HSP 1 Score: 289 bits (739), Expect = 2.460e-92
Identity = 153/244 (62.70%), Postives = 184/244 (75.41%), Query Frame = 1
Query:   34 IVGSSPVIQRVFKQIALAAQSETSVQVSGETGTGKELVARAIHRHSTRAAAPFVPVNLAEVSIPLAESELFGHTRGAFTGAETDRQGLLEQAHGGTVFLDEVADIPLPLQVKLLRALELGEFRPVGSTRSIHADFRIISASNTDLKQAVAKGRFREDLYFRLAAFEIVLPPLRERREDIPALAQHFLA-LMQSNSPSPHARFSSKAMAELQERQWRGNVRELRRAIEHALVHARNGEVLPEHLP 762
            ++G +PV+Q +FK+IAL + SE  V +SGE+GTGKELVARAIH++S RA+APFV VN+A +S  LAESELFGH RGAFTGAE  R GLL  A GGT+FLDEVADIPLP+QVKLLRALE GE  PVGS R+   +FR+ISA++ DL   V +G FR DLYFRL  F++ LPPLRER+ED+P L  HFL  L    SP     F+S A+AE Q R W GNVRELR A+EHAL+ AR G +LPEH P
Sbjct:  138 LIGKTPVMQEIFKRIALVSASEACVFISGESGTGKELVARAIHQYSKRASAPFVAVNVAALSPSLAESELFGHVRGAFTGAEQSRAGLLADADGGTLFLDEVADIPLPVQVKLLRALEHGEVMPVGSGRTTRTNFRLISATHQDLLAKVREGTFRHDLYFRLCTFQVPLPPLRERKEDLPLLVNHFLQQLAPGKSPGS---FTSVALAEAQRRPWHGNVRELRNAVEHALIVAREGPILPEHWP 378          
BLAST of mRNA_M-pyrifera_M_contig85310.19888.1 vs. uniprot
Match: A0A7Y5SPP5_9BACT (Sigma-54-dependent Fis family transcriptional regulator n=1 Tax=Pirellulales bacterium TaxID=2715253 RepID=A0A7Y5SPP5_9BACT)

HSP 1 Score: 288 bits (738), Expect = 3.010e-92
Identity = 153/245 (62.45%), Postives = 187/245 (76.33%), Query Frame = 1
Query:   34 IVGSSPVIQRVFKQIALAAQSETSVQVSGETGTGKELVARAIHRHSTRAAAPFVPVNLAEVSIPLAESELFGHTRGAFTGAETDRQGLLEQAHGGTVFLDEVADIPLPLQVKLLRALELGEFRPVGSTRSIHADFRIISASNTDLKQAVAKGRFREDLYFRLAAFEIVLPPLRERREDIPALAQHFLALMQSNSPS-PHARFSSKAMAELQERQWRGNVRELRRAIEHALVHARNGEVLPEHLPA 765
            IVGSSP +Q VFK+IAL A SE  V + GE+GTGKELVARAIHR+S RA  PF+ VN+A +S  LAESELFGH RGAFTGA+  R GLLE+A+GGT+FLDEVADIPL LQVKLLRALE  E  PVG T+ +  DFRI+SA++ +L + VA GRFR DLYFRL AF+I +PPLR R EDI  LA+HFLA   S   + PH   + +AMA+L++R W GNVRELR A++HA++ A  G + PEHLP+
Sbjct:  136 IVGSSPAMQEVFKRIALVAPSEACVHICGESGTGKELVARAIHRYSRRATGPFIAVNIASLSQSLAESELFGHVRGAFTGADQPRAGLLERANGGTIFLDEVADIPLSLQVKLLRALEHREVLPVGGTQPVQVDFRIVSATHRNLAECVADGRFRHDLYFRLLAFQIEIPPLRRRPEDIGPLAEHFLARSASTGGTRPH--LTPEAMADLRKRPWYGNVRELRNALDHAMILAPRGRIAPEHLPS 378          
BLAST of mRNA_M-pyrifera_M_contig85310.19888.1 vs. uniprot
Match: A0A356EN69_9PLAN (Sigma-54-dependent Fis family transcriptional regulator n=2 Tax=Planctomycetia TaxID=203683 RepID=A0A356EN69_9PLAN)

HSP 1 Score: 287 bits (734), Expect = 1.470e-91
Identity = 147/245 (60.00%), Postives = 186/245 (75.92%), Query Frame = 1
Query:   28 ERIVGSSPVIQRVFKQIALAAQSETSVQVSGETGTGKELVARAIHRHSTRAAAPFVPVNLAEVSIPLAESELFGHTRGAFTGAETDRQGLLEQAHGGTVFLDEVADIPLPLQVKLLRALELGEFRPVGSTRSIHADFRIISASNTDLKQAVAKGRFREDLYFRLAAFEIVLPPLRERREDIPALAQHFLALMQSNSPSPHARFSSKAMAELQERQWRGNVRELRRAIEHALVHARNGEVLPEHLP 762
            +++VG+S V++ VFK+IAL A S+  V +  E+GTGKEL ARAIHR+S R+A PFV +N+A +S  LAESELFGH +G+FTGA+  R+GLLEQA GGT+FLDEVADIP P+QVKLLRALE  E  PVG+ R + +DFRIISA++ +L   VA+GRFR DLYFRL  FEI +PPLRE  +DI  LA+HFL L+ +    P    S+ AMAEL+ R W GN+RELR A+EHA+V AR G + PEHLP
Sbjct:  136 DQMVGTSAVMREVFKRIALVAASDACVHLRAESGTGKELAARAIHRYSRRSAGPFVAINVASLSPTLAESELFGHAKGSFTGADASRKGLLEQADGGTIFLDEVADIPAPIQVKLLRALEHREMLPVGANRPVRSDFRIISATHQNLANLVAEGRFRHDLYFRLITFEIEIPPLREHPDDIGPLAKHFLRLLAATRNEPSPALSAAAMAELRRRPWHGNIRELRNAVEHAVVLARGGAIGPEHLP 380          
BLAST of mRNA_M-pyrifera_M_contig85310.19888.1 vs. uniprot
Match: A0A518AGI7_9BACT (Transcriptional regulatory protein ZraR n=1 Tax=Aeoliella mucimassa TaxID=2527972 RepID=A0A518AGI7_9BACT)

HSP 1 Score: 286 bits (733), Expect = 1.800e-91
Identity = 153/247 (61.94%), Postives = 182/247 (73.68%), Query Frame = 1
Query:   28 ERIVGSSPVIQRVFKQIALAAQSETSVQVSGETGTGKELVARAIHRHSTRAAAPFVPVNLAEVSIPLAESELFGHTRGAFTGAETDRQGLLEQAHGGTVFLDEVADIPLPLQVKLLRALELGEFRPVGSTRSIHADFRIISASNTDLKQAVAKGRFREDLYFRLAAFEIVLPPLRERREDIPALAQHFLALMQSNSPSPHA--RFSSKAMAELQERQWRGNVRELRRAIEHALVHARNGEVLPEHLP 762
            ++++G +P++Q +FKQIAL A ++TSV + GE+G GKE+VARAIHRHS  +  PFV VN+A +S  LAESELFGHT GAFTGA   R GLL QA+GGT+FLDEVADIPLPLQVKLLRA+E GE  PVG+ + +   FRII AS+  LKQ V  G FR DLYFRLAAFEI +PPLRER  DIP LAQHF A        PHA   FS  A+ EL+ R W GNVRELR A+EHA V  R+G + PEHLP
Sbjct:  136 DKLIGQTPIMQELFKQIALVAATDTSVVLQGESGVGKEVVARAIHRHSIASDQPFVAVNIAALSPSLAESELFGHTAGAFTGASRARDGLLVQANGGTLFLDEVADIPLPLQVKLLRAVEEGEVLPVGADQPVQTRFRIIGASHQSLKQCVQSGTFRHDLYFRLAAFEITIPPLRERANDIPLLAQHFAARR------PHAPQTFSDPAIVELRRRPWHGNVRELRNAVEHAQVVCRSGVITPEHLP 376          
BLAST of mRNA_M-pyrifera_M_contig85310.19888.1 vs. uniprot
Match: A0A5C9CMP3_9BACT (Two-component system NtrC family nitrogen regulation response regulator GlnG n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A5C9CMP3_9BACT)

HSP 1 Score: 286 bits (731), Expect = 3.610e-91
Identity = 151/246 (61.38%), Postives = 183/246 (74.39%), Query Frame = 1
Query:   25 RERIVGSSPVIQRVFKQIALAAQSETSVQVSGETGTGKELVARAIHRHSTRAAAPFVPVNLAEVSIPLAESELFGHTRGAFTGAETDRQGLLEQAHGGTVFLDEVADIPLPLQVKLLRALELGEFRPVGSTRSIHADFRIISASNTDLKQAVAKGRFREDLYFRLAAFEIVLPPLRERREDIPALAQHFLALMQSNSPSPHARFSSKAMAELQERQWRGNVRELRRAIEHALVHARNGEVLPEHLP 762
            + +IVG SPV+Q VFKQIAL A S+  V VSGE+GTGKELVARAIHR+S R+  PFVPV++A +S  LAESELFGH RGAFTGA+  R GLLEQA GGTVFLDEVADIPL LQ+KLLRALE GE  PVGS +    DFR++SA++ DL++ VA G FR DL+FRL  F+I LPPLRER  DI  L +HF+  + + +  P    S +A AEL  R W GNVRELR AIEHA++ AR G++ P+  P
Sbjct:  135 QNQIVGHSPVLQDVFKQIALVAASDACVLVSGESGTGKELVARAIHRYSRRSDGPFVPVHVAALSPMLAESELFGHVRGAFTGADAPRTGLLEQAQGGTVFLDEVADIPLALQIKLLRALEHGEIVPVGSDKPRTIDFRLLSATHQDLREKVAAGSFRHDLFFRLVTFQIELPPLRERGPDILELTEHFIGNLTAKNQLPRPTLSKRAEAELNRRPWHGNVRELRNAIEHAVIMARGGQIEPDQFP 380          
BLAST of mRNA_M-pyrifera_M_contig85310.19888.1 vs. uniprot
Match: A0A3M1RIV7_9BACT (Sigma-54-dependent Fis family transcriptional regulator n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3M1RIV7_9BACT)

HSP 1 Score: 285 bits (728), Expect = 1.790e-90
Identity = 150/254 (59.06%), Postives = 184/254 (72.44%), Query Frame = 1
Query:    1 DDMGDGNPRERIVGSSPVIQRVFKQIALAAQSETSVQVSGETGTGKELVARAIHRHSTRAAAPFVPVNLAEVSIPLAESELFGHTRGAFTGAETDRQGLLEQAHGGTVFLDEVADIPLPLQVKLLRALELGEFRPVGSTRSIHADFRIISASNTDLKQAVAKGRFREDLYFRLAAFEIVLPPLRERREDIPALAQHFLALMQSNSPSPHARFSSKAMAELQERQWRGNVRELRRAIEHALVHARNGEVLPEHLP 762
            D  G  +    IVG+SP +Q VFK+IALAA     V + GETGTGKELVARAIHR S RA  PFVPVN+A +S  LAESELFGH RGAFTGAE+ R+GLL+QA GGT+F+DEVA+IP  +QVKLLR+L+ GE   VG+ R +  DFRIISA++ DL + V +G FR DLYFRL  FEI LPPLRERR+DIP LA+HFLA   + +  P    + + + E++ R W GNVRELR  +E A + AR G +LPEHLP
Sbjct:  138 DTRGKADDEYVIVGNSPAMQEVFKKIALAAAGTACVHLKGETGTGKELVARAIHRFSRRADGPFVPVNIASLSPTLAESELFGHERGAFTGAESRRRGLLQQADGGTLFIDEVAEIPEAIQVKLLRSLDYGEVLAVGAERPVRCDFRIISATHQDLAELVRQGTFRRDLYFRLVTFEIELPPLRERRDDIPLLAEHFLARFAARNGRPVPTLAPETLEEMERRPWWGNVRELRNCLESAAMVARGGRILPEHLP 391          
BLAST of mRNA_M-pyrifera_M_contig85310.19888.1 vs. uniprot
Match: A0A4P5XU50_9BACT (Sigma-54-dependent Fis family transcriptional regulator n=1 Tax=Planctomycetia bacterium TaxID=2052181 RepID=A0A4P5XU50_9BACT)

HSP 1 Score: 284 bits (726), Expect = 2.040e-90
Identity = 150/246 (60.98%), Postives = 181/246 (73.58%), Query Frame = 1
Query:   25 RERIVGSSPVIQRVFKQIALAAQSETSVQVSGETGTGKELVARAIHRHSTRAAAPFVPVNLAEVSIPLAESELFGHTRGAFTGAETDRQGLLEQAHGGTVFLDEVADIPLPLQVKLLRALELGEFRPVGSTRSIHADFRIISASNTDLKQAVAKGRFREDLYFRLAAFEIVLPPLRERREDIPALAQHFLALMQSNSPSPHARFSSKAMAELQERQWRGNVRELRRAIEHALVHARNGEVLPEHLP 762
            +++IVG SP +Q VFKQIAL A SE  V VSGE+GTGKELVARAIHR S R+A PFVPV++A +S  LAESELFGH RGAFTGA+  R GLLEQA GGTVFLDEVADIPLPLQ+KLLRALE GE  PVGS +    DFR++SA++  L + VA G FR DL+FRL  F+I LPPLRER  D+  L +HF+  + + +  P    S +A AEL  R W GNVRELR  IEHA++ AR G++ P+  P
Sbjct:  135 QDQIVGHSPALQDVFKQIALVAGSEACVLVSGESGTGKELVARAIHRFSRRSAGPFVPVHVAALSPMLAESELFGHVRGAFTGADAPRTGLLEQAQGGTVFLDEVADIPLPLQIKLLRALEHGEIVPVGSDKPRTIDFRLVSATHQKLSEKVATGTFRHDLFFRLVTFQIELPPLRERGADLLELTEHFIGNLTAKNQLPRPTLSKRAEAELARRPWHGNVRELRNTIEHAVIIARGGQIEPDQFP 380          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig85310.19888.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C1JU90_9BACT2.030e-9663.52Sigma-54-dependent Fis family transcriptional regu... [more]
A0A847GQ87_9BACT5.920e-9462.60Sigma-54-dependent Fis family transcriptional regu... [more]
A0A7C7QYI1_9PLAN2.320e-9263.71Sigma-54-dependent Fis family transcriptional regu... [more]
A0A517YJP3_9BACT2.460e-9262.70Nitrogen assimilation regulatory protein n=1 Tax=A... [more]
A0A7Y5SPP5_9BACT3.010e-9262.45Sigma-54-dependent Fis family transcriptional regu... [more]
A0A356EN69_9PLAN1.470e-9160.00Sigma-54-dependent Fis family transcriptional regu... [more]
A0A518AGI7_9BACT1.800e-9161.94Transcriptional regulatory protein ZraR n=1 Tax=Ae... [more]
A0A5C9CMP3_9BACT3.610e-9161.38Two-component system NtrC family nitrogen regulati... [more]
A0A3M1RIV7_9BACT1.790e-9059.06Sigma-54-dependent Fis family transcriptional regu... [more]
A0A4P5XU50_9BACT2.040e-9060.98Sigma-54-dependent Fis family transcriptional regu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig85310contigM-pyrifera_M_contig85310:20..796 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score278.1
Seed ortholog evalue4.2e-72
Seed eggNOG ortholog530564.Psta_2438
KEGG koko:K02481,ko:K07712
KEGG Pathwayko02020,map02020
KEGG ModuleM00497
Hectar predicted targeting categoryother localisation
EggNOG free text desc.COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
EggNOG OGs2IXYA@203682,COG2204@1,COG2204@2
COG Functional cat.T
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko02022
Exons1
Model size777
Cds size771
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816761.89469-UTR-M-pyrifera_M_contig85310:19..251622816761.89469-UTR-M-pyrifera_M_contig85310:19..25Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig85310 20..25 +
1692278163.179877-UTR-M-pyrifera_M_contig85310:19..251692278163.179877-UTR-M-pyrifera_M_contig85310:19..25Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig85310 20..25 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816761.9062462-CDS-M-pyrifera_M_contig85310:25..7961622816761.9062462-CDS-M-pyrifera_M_contig85310:25..796Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85310 26..796 +
1692278163.193977-CDS-M-pyrifera_M_contig85310:25..7961692278163.193977-CDS-M-pyrifera_M_contig85310:25..796Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85310 26..796 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig85310.19888.1prot_M-pyrifera_M_contig85310.19888.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig85310 26..796 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig85310.19888.1

>prot_M-pyrifera_M_contig85310.19888.1 ID=prot_M-pyrifera_M_contig85310.19888.1|Name=mRNA_M-pyrifera_M_contig85310.19888.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=257bp
MGDGNPRERIVGSSPVIQRVFKQIALAAQSETSVQVSGETGTGKELVARA
IHRHSTRAAAPFVPVNLAEVSIPLAESELFGHTRGAFTGAETDRQGLLEQ
AHGGTVFLDEVADIPLPLQVKLLRALELGEFRPVGSTRSIHADFRIISAS
NTDLKQAVAKGRFREDLYFRLAAFEIVLPPLRERREDIPALAQHFLALMQ
SNSPSPHARFSSKAMAELQERQWRGNVRELRRAIEHALVHARNGEVLPEH
LPAETRI
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mRNA from alignment at M-pyrifera_M_contig85310:20..796+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig85310.19888.1 ID=mRNA_M-pyrifera_M_contig85310.19888.1|Name=mRNA_M-pyrifera_M_contig85310.19888.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=777bp|location=Sequence derived from alignment at M-pyrifera_M_contig85310:20..796+ (Macrocystis pyrifera P11B4 male)
GACGACATGGGCGACGGGAATCCGCGAGAGCGAATCGTCGGTAGTTCTCC CGTCATTCAGCGCGTGTTCAAGCAAATTGCCCTGGCCGCTCAGTCCGAGA CAAGCGTACAAGTCTCGGGAGAAACTGGTACCGGGAAGGAGTTGGTGGCC CGCGCGATCCACCGACACAGCACGCGGGCAGCAGCACCGTTTGTGCCGGT GAACCTGGCAGAAGTCAGCATTCCGCTGGCCGAAAGTGAATTATTCGGCC ACACCCGTGGTGCGTTCACCGGTGCTGAAACCGACCGACAAGGATTGCTG GAACAAGCCCACGGCGGAACGGTATTCCTCGATGAAGTCGCCGATATCCC GCTGCCGTTGCAAGTCAAACTGCTTCGTGCCCTGGAGCTGGGTGAGTTTC GTCCCGTCGGGAGCACGCGTTCGATTCACGCCGACTTCCGGATTATTTCG GCATCGAACACCGATCTAAAACAGGCCGTGGCCAAGGGGCGTTTTCGCGA GGATCTCTACTTTCGGCTAGCCGCCTTCGAGATTGTGCTGCCTCCGTTGC GTGAGCGTCGAGAAGATATTCCGGCCCTCGCGCAGCATTTTCTGGCACTG ATGCAATCGAATTCGCCCTCCCCTCACGCAAGATTCTCAAGCAAGGCCAT GGCCGAGCTGCAAGAACGCCAGTGGCGGGGCAACGTGCGCGAATTGCGTC GTGCCATCGAACATGCTCTCGTTCACGCCCGAAACGGTGAGGTCTTGCCC GAGCATCTTCCTGCGGAGACGCGGATT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig85310:20..796+

>mRNA_M-pyrifera_M_contig85310.19888.1 ID=mRNA_M-pyrifera_M_contig85310.19888.1|Name=mRNA_M-pyrifera_M_contig85310.19888.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1542bp|location=Sequence derived from alignment at M-pyrifera_M_contig85310:20..796+ (Macrocystis pyrifera P11B4 male)
ATGGGCGACGGGAATCCGCGAGAGCGAATCGTCGGTAGTTCTCCCGTCAT
TCAGCGCGTGTTCAAGCAAATTGCCCTGGCCGCTCAGTCCGAGACAAGCG
TACAAGTCTCGGGAGAAACTGGTACCGGGAAGGAGTTGGTGGCCCGCGCG
ATCCACCGACACAGCACGCGGGCAGCAGCACCGTTTGTGCCGGTGAACCT
GGCAGAAGTCAGCATTCCGCTGGCCGAAAGTGAATTATTCGGCCACACCC
GTGGTGCGTTCACCGGTGCTGAAACCGACCGACAAGGATTGCTGGAACAA
GCCCACGGCGGAACGGTATTCCTCGATGAAGTCGCCGATATCCCGCTGCC
GTTGCAAGTCAAACTGCTTCGTGCCCTGGAGCTGGGTGAGTTTCGTCCCG
TCGGGAGCACGCGTTCGATTCACGCCGACTTCCGGATTATTTCGGCATCG
AACACCGATCTAAAACAGGCCGTGGCCAAGGGGCGTTTTCGCGAGGATCT
CTACTTTCGGCTAGCCGCCTTCGAGATTGTGCTGCCTCCGTTGCGTGAGC
GTCGAGAAGATATTCCGGCCCTCGCGCAGCATTTTCTGGCACTGATGCAA
TCGAATTCGCCCTCCCCTCACGCAAGATTCTCAAGCAAGGCCATGGCCGA
GCTGCAAGAACGCCAGTGGCGGGGCAACGTGCGCGAATTGCGTCGTGCCA
TCGAACATGCTCTCGTTCACGCCCGAAACGGTGAGGTCTTGCCCGAGCAT
CTTCCTGCGGAGACGCGGATTATGGGCGACGGGAATCCGCGAGAGCGAAT
CGTCGGTAGTTCTCCCGTCATTCAGCGCGTGTTCAAGCAAATTGCCCTGG
CCGCTCAGTCCGAGACAAGCGTACAAGTCTCGGGAGAAACTGGTACCGGG
AAGGAGTTGGTGGCCCGCGCGATCCACCGACACAGCACGCGGGCAGCAGC
ACCGTTTGTGCCGGTGAACCTGGCAGAAGTCAGCATTCCGCTGGCCGAAA
GTGAATTATTCGGCCACACCCGTGGTGCGTTCACCGGTGCTGAAACCGAC
CGACAAGGATTGCTGGAACAAGCCCACGGCGGAACGGTATTCCTCGATGA
AGTCGCCGATATCCCGCTGCCGTTGCAAGTCAAACTGCTTCGTGCCCTGG
AGCTGGGTGAGTTTCGTCCCGTCGGGAGCACGCGTTCGATTCACGCCGAC
TTCCGGATTATTTCGGCATCGAACACCGATCTAAAACAGGCCGTGGCCAA
GGGGCGTTTTCGCGAGGATCTCTACTTTCGGCTAGCCGCCTTCGAGATTG
TGCTGCCTCCGTTGCGTGAGCGTCGAGAAGATATTCCGGCCCTCGCGCAG
CATTTTCTGGCACTGATGCAATCGAATTCGCCCTCCCCTCACGCAAGATT
CTCAAGCAAGGCCATGGCCGAGCTGCAAGAACGCCAGTGGCGGGGCAACG
TGCGCGAATTGCGTCGTGCCATCGAACATGCTCTCGTTCACGCCCGAAAC
GGTGAGGTCTTGCCCGAGCATCTTCCTGCGGAGACGCGGATT
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