mRNA_M-pyrifera_M_contig85176.19853.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig85176.19853.1
Unique NamemRNA_M-pyrifera_M_contig85176.19853.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig85176.19853.1 vs. uniprot
Match: A2DDV6_TRIVA (B-box zinc finger family protein n=1 Tax=Trichomonas vaginalis TaxID=5722 RepID=A2DDV6_TRIVA)

HSP 1 Score: 94.0 bits (232), Expect = 5.370e-20
Identity = 53/110 (48.18%), Postives = 65/110 (59.09%), Query Frame = 1
Query:   37 GHVLGGFAADPWYFHGDYYGSPAS-FLFSLTRGPGVKVPFR----------ADPDVLQFGIGDLVLTGDFSECSSEIEKSYGIGLRPGSDETRSLLAGRHKFALQDVEVW 333
            G+V GGFAA  W   G  +G  +S FLFS+ R   + +P+R          A  DVL FG  DLVL GDF+ CS++IEKSYGIGL+PGS E R       +FA   VEVW
Sbjct:  615 GYVFGGFAATKWNCDGQPFGDKSSSFLFSINRD--IFIPYRPTIDDPCYLYATKDVLTFGKYDLVLAGDFNMCSAQIEKSYGIGLQPGSKEARLFFLPEKEFAADCVEVW 722          
BLAST of mRNA_M-pyrifera_M_contig85176.19853.1 vs. uniprot
Match: A2EUG7_TRIVA (B-box zinc finger family protein n=1 Tax=Trichomonas vaginalis TaxID=5722 RepID=A2EUG7_TRIVA)

HSP 1 Score: 84.3 bits (207), Expect = 1.250e-16
Identity = 43/110 (39.09%), Postives = 63/110 (57.27%), Query Frame = 1
Query:   31 ADGHVLGGFAADPWYFHGDYYGS-PASFLFSLTRGPGVKVPFRAD--------PDVLQFGIGDLVLTGDFSECSSEIEKSYGIGLRPGSDETRSLLAGRHKFALQDVEVW 333
            A+  + GGFAA  W   G  +G   +SFLFS+     ++   +++        P+   FG  DLVL GDF  C+S IE ++GIGLR GS++ ++ LAG  +F   +VEVW
Sbjct:  534 ANDRIFGGFAASKWTNDGRSFGEGTSSFLFSIDNNAFIQAHPQSEDPVYMVGTPETFSFGRDDLVLAGDFDRCASTIENTFGIGLRFGSEQAQTFLAGTSRFKADEVEVW 643          
BLAST of mRNA_M-pyrifera_M_contig85176.19853.1 vs. uniprot
Match: A0A8J5XI23_DIALT (TLDc domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XI23_DIALT)

HSP 1 Score: 81.6 bits (200), Expect = 1.140e-15
Identity = 51/118 (43.22%), Postives = 66/118 (55.93%), Query Frame = 1
Query:   10 TVVVGRTADGHVLGGFAADPWYFHGDYYGSPASFLFSLTRGPGVKVPFRAD----------PDVLQFGIGDLVLTGDFSECSSEIEKSYGIGLRPGSDETRSLLAGRHKFALQDVEVW 333
            TVV+ R A+GH  GG+A+ PW      +G+  S LFSL+    +++P  A            D++ FG  DLVLTGDF ECSS +E S+ IGL P   E    LAG   FA + VEVW
Sbjct:  838 TVVLCR-ANGHSFGGYASTPWNRARSRFGTRRSMLFSLSHD--MRIPCVASGIEQRCLWGSDDLIAFGGTDLVLTGDFHECSSRLEHSFSIGLSPS--EAALFLAGAPTFACEVVEVW 950          
BLAST of mRNA_M-pyrifera_M_contig85176.19853.1 vs. uniprot
Match: A2ERD5_TRIVA (B-box zinc finger family protein n=1 Tax=Trichomonas vaginalis TaxID=5722 RepID=A2ERD5_TRIVA)

HSP 1 Score: 81.3 bits (199), Expect = 1.510e-15
Identity = 46/118 (38.98%), Postives = 66/118 (55.93%), Query Frame = 1
Query:   10 TVVVGRTADGHVLGGFAADPWYFHGDYYGSPAS-FLFSLTRGPGVKVPFRAD--------PDVLQFGIGDLVLTGD-FSECSSEIEKSYGIGLRPGSDETRSLLAGRHKFALQDVEVW 333
            T ++ ++ D  V GGFAA  W   G      +S FLFS+T+   +    ++D        P+ L FG  DLV+ G+ F  CSSE+E S+GIG   GS + +  LAG+H+FA   +EVW
Sbjct:  551 TCILIKSGD-QVFGGFAASKWTADGTKKTDKSSTFLFSITKDAFIPYGGQSDEKFYTMSTPETLNFGGKDLVIAGESFERCSSELENSFGIGFLYGSQKAKEFLAGKHRFAADQIEVW 667          
BLAST of mRNA_M-pyrifera_M_contig85176.19853.1 vs. uniprot
Match: A0A7S2WT40_9STRA (Hypothetical protein (Fragment) n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WT40_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 1.830e-14
Identity = 30/62 (48.39%), Postives = 47/62 (75.81%), Query Frame = 1
Query:  154 RADPDVLQFGIGDLVLTGDFSECSSEIEKSYGIGLRPGSDETRSLLAGRHKFALQDVEVWAV 339
            ++D   +QFG+ DLVL+GD + CSS++E S+G+G+ PG+DE  +LLAG   F + ++EVWA+
Sbjct:  203 KSDESTMQFGVRDLVLSGDLTSCSSQLECSFGVGMSPGADEASTLLAGTGTFQVDELEVWAI 264          
BLAST of mRNA_M-pyrifera_M_contig85176.19853.1 vs. uniprot
Match: A0A5A8C5K7_CAFRO (TLDc domain-containing protein n=5 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8C5K7_CAFRO)

HSP 1 Score: 73.6 bits (179), Expect = 7.790e-13
Identity = 32/62 (51.61%), Postives = 45/62 (72.58%), Query Frame = 1
Query:  157 ADPDVLQFGIGDLVLTGDFSECSSEIEKSYGIGLRPGSDETRSLLAGRHKFALQDVEVWAVG 342
            +D   + FG+ DLV+ GD + CSSEIE ++GIGLR GS   ++LLAG   FA+ ++EVW+VG
Sbjct:  904 SDEGRISFGLTDLVIEGDLARCSSEIESTFGIGLRAGSTAAKTLLAGAETFAVSNLEVWSVG 965          
BLAST of mRNA_M-pyrifera_M_contig85176.19853.1 vs. uniprot
Match: A0A024FZ51_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024FZ51_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 4.780e-5
Identity = 35/111 (31.53%), Postives = 51/111 (45.95%), Query Frame = 1
Query:   10 TVVVGRTADGHVLGGFAADPWYFHGDYYGSPASFLFSLTRGPGVKV-PFRADPDVLQFGIGDLVLTGDFSECSSEIEKSYGIGLRPGSDETRS--LLAGRHKFALQDVEVW 333
            T+++ +T  G VLGGFA   W     YYG   SF+F  T  P   V P+  +  +  F  G+L+  G     +  ++     G   G  +T S   LA   +F +  VEVW
Sbjct:  328 TILIIKTVQGDVLGGFAPTSWETFNTYYGIGESFVF--TCWPYFNVFPWSKENSMFMFSNGELIAMGGGGNFAWSLDSDLSRGTS-GKSKTFSNPCLASSAEFVVSSVEVW 435          
BLAST of mRNA_M-pyrifera_M_contig85176.19853.1 vs. uniprot
Match: V9L3K0_CALMI (TLDc domain-containing protein (Fragment) n=1 Tax=Callorhinchus milii TaxID=7868 RepID=V9L3K0_CALMI)

HSP 1 Score: 50.8 bits (120), Expect = 5.730e-5
Identity = 32/122 (26.23%), Postives = 54/122 (44.26%), Query Frame = 1
Query:   10 TVVVGRTADGHVLGGFAADPWYFHGDYYGSPASFLFSLTRGPGVKVPFRADPDVLQFGIGD------LVLTGDFSECSSEIEKSYGIGLRPGSDETRSL----LAGRHKFALQDVEVWAVGA 345
            ++++ + +DGH+ GGFA+  W     + G    FLF+L+   G+      +   +    G       L + G  +     I+  YG G         +     L+G+  FA+  +EVWAVGA
Sbjct:  122 SLLIIKDSDGHIFGGFASQSWDVKPQFQGDSKCFLFTLSPQLGMYTCTSYNNHYMYLNHGQQTMPNGLGMGGQHNYFGLWIDSDYGTGHSKAKPRCTTYNSPQLSGKENFAIDVLEVWAVGA 243          
BLAST of mRNA_M-pyrifera_M_contig85176.19853.1 vs. uniprot
Match: A0A820P3S0_9BILA (Hypothetical protein n=7 Tax=Rotaria socialis TaxID=392032 RepID=A0A820P3S0_9BILA)

HSP 1 Score: 50.8 bits (120), Expect = 6.370e-5
Identity = 38/129 (29.46%), Postives = 57/129 (44.19%), Query Frame = 1
Query:    4 EATVVVGRTADGHVLGGFAADPWYFHGDYYGSPASFLFSLTRGPG---VKVPFRADPDVLQ--------FGIG-DL-------VLTGDFSECSSEIEKSYGIGLRPGSDETRSLLAGRHKFALQDVEVW 333
            + T+V+ R++DG++ GG+AA  W   G+Y  +  SFLF LT   G    K P+  + D L         FG G DL        +   +    S    S G+G        ++   G H F   +VEV+
Sbjct:  263 DPTIVIIRSSDGYLFGGYAAQSWNSAGNYINAINSFLFLLTNANGSQPTKFPYNNNGDGLYGHGGYGPTFGGGHDLHVCDNSNTVNNSYCNIPSSYTSSLGLG--------QATFTGAHNFQTTEVEVF 383          
BLAST of mRNA_M-pyrifera_M_contig85176.19853.1 vs. uniprot
Match: A0A4W3INT0_CALMI (TLDc domain-containing protein n=3 Tax=Callorhinchus milii TaxID=7868 RepID=A0A4W3INT0_CALMI)

HSP 1 Score: 50.8 bits (120), Expect = 6.580e-5
Identity = 32/122 (26.23%), Postives = 54/122 (44.26%), Query Frame = 1
Query:   10 TVVVGRTADGHVLGGFAADPWYFHGDYYGSPASFLFSLTRGPGVKVPFRADPDVLQFGIGD------LVLTGDFSECSSEIEKSYGIGLRPGSDETRSL----LAGRHKFALQDVEVWAVGA 345
            ++++ + +DGH+ GGFA+  W     + G    FLF+L+   G+      +   +    G       L + G  +     I+  YG G         +     L+G+  FA+  +EVWAVGA
Sbjct:  303 SLLIIKDSDGHIFGGFASQSWDVKPQFQGDSKCFLFTLSPQLGMYTCTSYNNHYMYLNHGQQTMPNGLGMGGQHNYFGLWIDSDYGTGHSKAKPRCTTYNSPQLSGKENFAIDVLEVWAVGA 424          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig85176.19853.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A2DDV6_TRIVA5.370e-2048.18B-box zinc finger family protein n=1 Tax=Trichomon... [more]
A2EUG7_TRIVA1.250e-1639.09B-box zinc finger family protein n=1 Tax=Trichomon... [more]
A0A8J5XI23_DIALT1.140e-1543.22TLDc domain-containing protein n=1 Tax=Diacronema ... [more]
A2ERD5_TRIVA1.510e-1538.98B-box zinc finger family protein n=1 Tax=Trichomon... [more]
A0A7S2WT40_9STRA1.830e-1448.39Hypothetical protein (Fragment) n=1 Tax=labyrinthu... [more]
A0A5A8C5K7_CAFRO7.790e-1351.61TLDc domain-containing protein n=5 Tax=Cafeteria r... [more]
A0A024FZ51_9STRA4.780e-531.53Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
V9L3K0_CALMI5.730e-526.23TLDc domain-containing protein (Fragment) n=1 Tax=... [more]
A0A820P3S0_9BILA6.370e-529.46Hypothetical protein n=7 Tax=Rotaria socialis TaxI... [more]
A0A4W3INT0_CALMI6.580e-526.23TLDc domain-containing protein n=3 Tax=Callorhinch... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig85176contigM-pyrifera_M_contig85176:217..813 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.8
Seed ortholog evalue1.1e-16
Seed eggNOG ortholog5722.XP_001582468.1
KEGG koko:K12800,ko:K20865
KEGG Pathwayko04217,ko04621,ko05133,ko05164,map04217,map04621,map05133,map05164
Hectar predicted targeting categoryother localisation
EggNOG free text desc.zinc ion binding
EggNOG OGsKOG2177@1,KOG2177@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons2
Model size351
Cds size351
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816760.00574-CDS-M-pyrifera_M_contig85176:216..4141622816760.00574-CDS-M-pyrifera_M_contig85176:216..414Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85176 217..414 -
1692278161.9635267-CDS-M-pyrifera_M_contig85176:216..4141692278161.9635267-CDS-M-pyrifera_M_contig85176:216..414Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85176 217..414 -
1622816760.0175083-CDS-M-pyrifera_M_contig85176:660..8131622816760.0175083-CDS-M-pyrifera_M_contig85176:660..813Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85176 661..813 -
1692278161.974324-CDS-M-pyrifera_M_contig85176:660..8131692278161.974324-CDS-M-pyrifera_M_contig85176:660..813Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85176 661..813 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig85176.19853.1prot_M-pyrifera_M_contig85176.19853.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig85176 217..813 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig85176.19853.1

>prot_M-pyrifera_M_contig85176.19853.1 ID=prot_M-pyrifera_M_contig85176.19853.1|Name=mRNA_M-pyrifera_M_contig85176.19853.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=117bp
DEATVVVGRTADGHVLGGFAADPWYFHGDYYGSPASFLFSLTRGPGVKVP
FRADPDVLQFGIGDLVLTGDFSECSSEIEKSYGIGLRPGSDETRSLLAGR
HKFALQDVEVWAVGAPA
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mRNA from alignment at M-pyrifera_M_contig85176:217..813-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig85176.19853.1 ID=mRNA_M-pyrifera_M_contig85176.19853.1|Name=mRNA_M-pyrifera_M_contig85176.19853.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=597bp|location=Sequence derived from alignment at M-pyrifera_M_contig85176:217..813- (Macrocystis pyrifera P11B4 male)
GACGAGGCCACTGTGGTGGTGGGCCGAACTGCAGACGGGCATGTGTTGGG TGGGTTTGCCGCCGATCCGTGGTATTTCCACGGAGACTATTACGGCTCCC CAGCCTCCTTCCTCTTTTCGCTCACGCGAGGACCCGGAGTGAAGGTGCCC TTTGTGGGCCGGGCTCGCGGCCCTCCCCAGGAAAGCGACCGAGACCACCG GGAGATCCACGAGCGGCAGCACGCGGATCGACTGCGAAAATGGGAGGAGG ACCGGGCTCAGGCCAGAGCCGAGCTGGAGCACTATGGCGTGGTGTTTGGC GCCGATGGGGAGGTGGTGGAGAACCCCGAGGGCGTCGACACGAGCGCAGC CACCGTGCCGCCCCCTCGCATGCGACCATTTGTCCGTTACGACGCCCAGC GCGCTGACCCAGACGTGCTCCAGTTTGGAATCGGAGATCTGGTGCTCACC GGAGACTTTTCAGAGTGCTCCTCGGAAATCGAAAAATCCTACGGCATTGG CCTGCGACCAGGGTCGGATGAAACGCGATCTCTGCTCGCCGGAAGGCACA AGTTCGCGCTCCAGGATGTCGAAGTCTGGGCCGTGGGCGCACCAGCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig85176:217..813-

>mRNA_M-pyrifera_M_contig85176.19853.1 ID=mRNA_M-pyrifera_M_contig85176.19853.1|Name=mRNA_M-pyrifera_M_contig85176.19853.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=702bp|location=Sequence derived from alignment at M-pyrifera_M_contig85176:217..813- (Macrocystis pyrifera P11B4 male)
GACGAGGCCACTGTGGTGGTGGGCCGAACTGCAGACGGGCATGTGTTGGG
TGGGTTTGCCGCCGATCCGTGGTATTTCCACGGAGACTATTACGGCTCCC
CAGCCTCCTTCCTCTTTTCGCTCACGCGAGGACCCGGAGTGAAGGTGCCC
TTTGACGAGGCCACTGTGGTGGTGGGCCGAACTGCAGACGGGCATGTGTT
GGGTGGGTTTGCCGCCGATCCGTGGTATTTCCACGGAGACTATTACGGCT
CCCCAGCCTCCTTCCTCTTTTCGCTCACGCGAGGACCCGGAGTGAAGGTG
CCCTTTCGCGCTGACCCAGACGTGCTCCAGTTTGGAATCGGAGATCTGGT
GCTCACCGGAGACTTTTCAGAGTGCTCCTCGGAAATCGAAAAATCCTACG
GCATTGGCCTGCGACCAGGGTCGGATGAAACGCGATCTCTGCTCGCCGGA
AGGCACAAGTTCGCGCTCCAGGATGTCGAAGTCTGGGCCGTGGGCGCACC
AGCGCGCGCTGACCCAGACGTGCTCCAGTTTGGAATCGGAGATCTGGTGC
TCACCGGAGACTTTTCAGAGTGCTCCTCGGAAATCGAAAAATCCTACGGC
ATTGGCCTGCGACCAGGGTCGGATGAAACGCGATCTCTGCTCGCCGGAAG
GCACAAGTTCGCGCTCCAGGATGTCGAAGTCTGGGCCGTGGGCGCACCAG
CG
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