mRNA_M-pyrifera_M_contig85101.19835.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig85101.19835.1
Unique NamemRNA_M-pyrifera_M_contig85101.19835.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig85101.19835.1 vs. uniprot
Match: A0A5A8CN95_CAFRO (Histone acetyltransferase n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CN95_CAFRO)

HSP 1 Score: 114 bits (286), Expect = 4.710e-28
Identity = 47/94 (50.00%), Postives = 71/94 (75.53%), Query Frame = 1
Query:    1 QISVMQLAERTSITPEDIVGTLRYHGLIRFVNGQHVICADPRIIDEKFQKLNKKKGPLVDPAYLHWAPLPPPPHIRKDKWSIKSKLKGPHDDSM 282
            ++S+M L   TSI PED++ TL+YHGLI++ NG +V+C DP +++ KFQK N KKGP+VDP+ LHWAP P    +++DKW+I++KL+   ++ M
Sbjct:  377 ELSIMDLVRITSIKPEDVMATLQYHGLIKYYNGTYVLCTDPALVEAKFQKYNNKKGPVVDPSKLHWAPYPIT--VKRDKWTIRAKLQARTEEEM 468          
BLAST of mRNA_M-pyrifera_M_contig85101.19835.1 vs. uniprot
Match: A0A6S8A1Q7_9STRA (Histone acetyltransferase n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A6S8A1Q7_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 4.840e-17
Identity = 41/87 (47.13%), Postives = 56/87 (64.37%), Query Frame = 1
Query:    4 ISVMQLAERTSITPEDIVGTLRYHGLIRFVNGQHVICADPRIIDEKFQKLNKKKGPLVDPAYLHWAPLPPPPHIRKDKWSIKSKLKG 264
            ISVM L + TSI  ED++ TL Y GLI+++NG HVI   P ++ EK     K++GP   P  +HWAPL     ++KDKWS+KSK + 
Sbjct:  247 ISVMDLTKITSIKTEDVILTLNYLGLIKYLNGSHVIFVTPEMLKEKLSVF-KQRGPRARPELIHWAPLVV--DVKKDKWSLKSKTRA 330          
BLAST of mRNA_M-pyrifera_M_contig85101.19835.1 vs. uniprot
Match: A0A1V9Z308_9STRA (Histone acetyltransferase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z308_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 2.290e-16
Identity = 39/85 (45.88%), Postives = 59/85 (69.41%), Query Frame = 1
Query:    1 QISVMQLAERTSITPEDIVGTLRYHGLIRFVNGQHVICADPRIIDEKFQKLNKKKGPLVDPAYLHWAPLPPPPHIRKDKWSIKSK 255
            ++SVM L + TSI  ED++ TL+Y  +I+++NGQ+V      I++E+  K+ KK GP V P +LHWAPL     I++DKWS+K+K
Sbjct:  364 ELSVMDLTKMTSIKNEDVIATLQYLNIIKYLNGQYVFALSADIVEEQLNKVTKK-GPQVCPEHLHWAPLQF--DIKRDKWSLKAK 445          
BLAST of mRNA_M-pyrifera_M_contig85101.19835.1 vs. uniprot
Match: A0A024G2L8_9STRA (Histone acetyltransferase n=2 Tax=Albugo TaxID=65356 RepID=A0A024G2L8_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 1.050e-14
Identity = 37/87 (42.53%), Postives = 59/87 (67.82%), Query Frame = 1
Query:    1 QISVMQLAERTSITPEDIVGTLRYHGLIRFVNGQHVICADPRIIDEKFQKLNKKKGPLVDPAYLHWAPLPPPPH--IRKDKWSIKSK 255
            +IS+M+L + TSI  +DI+ TL++  +IR+++GQ+V     ++IDE+  ++  K GP + P  LHW PL    H  I++DKWS+KSK
Sbjct:  403 EISIMELTKMTSIKSDDIISTLQFLNIIRYIDGQYVFVIPKQLIDEQLSRVCSK-GPQIHPEKLHWTPL----HLDIKRDKWSLKSK 484          
BLAST of mRNA_M-pyrifera_M_contig85101.19835.1 vs. uniprot
Match: W7TBF8_9STRA (Histone acetyltransferase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TBF8_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 5.080e-14
Identity = 39/88 (44.32%), Postives = 59/88 (67.05%), Query Frame = 1
Query:    4 ISVMQLAERTSITPEDIVGTLRYHGLIRFVNGQHVICADPRIIDEKFQKLNKKKGPLVDPAYLHWAPLPPPPHIRKDKWSIKSKLKGP 267
            +S+M LA+ TS   ED+V T  + GL+R+V+GQ++I A   +++E  +K    K P+VD A LHWAPL     +++DKWSI SK++ P
Sbjct:  429 LSIMDLAKMTSFVTEDVVSTCTFLGLLRYVSGQYLIYAPLPLVEELARKY-PVKPPVVDAARLHWAPLITM-DVKRDKWSIHSKVQPP 514          
BLAST of mRNA_M-pyrifera_M_contig85101.19835.1 vs. uniprot
Match: A0A6S8BQC4_9STRA (Histone acetyltransferase n=2 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A6S8BQC4_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 9.340e-14
Identity = 39/85 (45.88%), Postives = 57/85 (67.06%), Query Frame = 1
Query:    1 QISVMQLAERTSITPEDIVGTLRYHGLIRFVNGQHVICADPRIIDEKFQKLNKKKGPLVDPAYLHWAPLPPPPHIRKDKWSIKSK 255
            ++S++ LA  TSI  EDI+ TL Y G+I++V GQH I A P I+ EK ++ + + GP V    +HWAPL     ++KDKW++KSK
Sbjct:  400 KLSLIDLACITSIKIEDIILTLNYLGIIKYVGGQHCIYATPEIVTEKLKQFSGR-GPRVKADLIHWAPLFV--DVKKDKWALKSK 481          
BLAST of mRNA_M-pyrifera_M_contig85101.19835.1 vs. uniprot
Match: A0A6A5CCK2_NAEFO (Histone acetyltransferase n=2 Tax=Naegleria TaxID=5761 RepID=A0A6A5CCK2_NAEFO)

HSP 1 Score: 73.2 bits (178), Expect = 4.130e-13
Identity = 29/69 (42.03%), Postives = 48/69 (69.57%), Query Frame = 1
Query:    4 ISVMQLAERTSITPEDIVGTLRYHGLIRFVNGQHVICADPRIIDEKFQKLNKKKGPLVDPAYLHWAPLP 210
            +S+  +++ T+I  EDI  TL+Y GL+++  GQH+I A+P++I+E  +K  KK    +DP+ +HWAP P
Sbjct:  343 LSIKDISKMTAIKYEDITATLQYLGLLKYWKGQHIIAANPKVIEEHLEKRKKKDEVTIDPSKIHWAPYP 411          
BLAST of mRNA_M-pyrifera_M_contig85101.19835.1 vs. uniprot
Match: A8HUP5_CHLRE (Histone acetyltransferase n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A8HUP5_CHLRE)

HSP 1 Score: 67.8 bits (164), Expect = 1.960e-11
Identity = 31/71 (43.66%), Postives = 47/71 (66.20%), Query Frame = 1
Query:    4 ISVMQLAERTSITPEDIVGTLRYHGLIRFVNGQHVICADPRIIDEKFQKLNKKKGPLVDPAYLHWAPLPPP 216
            +S+ ++++ T I  +DIV TL+  GLI++  G H+I ADPR++ E + K   ++   VDPA LHW PLP P
Sbjct:  203 VSIKEMSDATMIRGQDIVETLQSLGLIKYWKGTHLIHADPRVVQEHWAKFAHQRVIEVDPACLHWQPLPAP 273          
BLAST of mRNA_M-pyrifera_M_contig85101.19835.1 vs. uniprot
Match: D8TQT1_VOLCA (Histone acetyltransferase n=5 Tax=Chlamydomonadales TaxID=3042 RepID=D8TQT1_VOLCA)

HSP 1 Score: 67.8 bits (164), Expect = 3.460e-11
Identity = 31/71 (43.66%), Postives = 47/71 (66.20%), Query Frame = 1
Query:    4 ISVMQLAERTSITPEDIVGTLRYHGLIRFVNGQHVICADPRIIDEKFQKLNKKKGPLVDPAYLHWAPLPPP 216
            +S+ ++++ T I  +DIV TL+  GLI++  G H+I ADPR++ E + K   ++   VDPA LHW PLP P
Sbjct:  372 VSIKEMSDATMIRAQDIVETLQSLGLIKYWKGTHLIHADPRVVQEHWAKYAHQRVIEVDPACLHWQPLPTP 442          
BLAST of mRNA_M-pyrifera_M_contig85101.19835.1 vs. uniprot
Match: A0A2K3D0S8_CHLRE (Histone acetyltransferase n=4 Tax=Chlamydomonadales TaxID=3042 RepID=A0A2K3D0S8_CHLRE)

HSP 1 Score: 67.8 bits (164), Expect = 3.460e-11
Identity = 31/71 (43.66%), Postives = 47/71 (66.20%), Query Frame = 1
Query:    4 ISVMQLAERTSITPEDIVGTLRYHGLIRFVNGQHVICADPRIIDEKFQKLNKKKGPLVDPAYLHWAPLPPP 216
            +S+ ++++ T I  +DIV TL+  GLI++  G H+I ADPR++ E + K   ++   VDPA LHW PLP P
Sbjct:  374 VSIKEMSDATMIRGQDIVETLQSLGLIKYWKGTHLIHADPRVVQEHWAKFAHQRVIEVDPACLHWQPLPAP 444          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig85101.19835.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8CN95_CAFRO4.710e-2850.00Histone acetyltransferase n=1 Tax=Cafeteria roenbe... [more]
A0A6S8A1Q7_9STRA4.840e-1747.13Histone acetyltransferase n=1 Tax=Aplanochytrium s... [more]
A0A1V9Z308_9STRA2.290e-1645.88Histone acetyltransferase n=1 Tax=Thraustotheca cl... [more]
A0A024G2L8_9STRA1.050e-1442.53Histone acetyltransferase n=2 Tax=Albugo TaxID=653... [more]
W7TBF8_9STRA5.080e-1444.32Histone acetyltransferase n=2 Tax=Monodopsidaceae ... [more]
A0A6S8BQC4_9STRA9.340e-1445.88Histone acetyltransferase n=2 Tax=Aplanochytrium s... [more]
A0A6A5CCK2_NAEFO4.130e-1342.03Histone acetyltransferase n=2 Tax=Naegleria TaxID=... [more]
A8HUP5_CHLRE1.960e-1143.66Histone acetyltransferase n=1 Tax=Chlamydomonas re... [more]
D8TQT1_VOLCA3.460e-1143.66Histone acetyltransferase n=5 Tax=Chlamydomonadale... [more]
A0A2K3D0S8_CHLRE3.460e-1143.66Histone acetyltransferase n=4 Tax=Chlamydomonadale... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig85101contigM-pyrifera_M_contig85101:205..489 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.9
Seed ortholog evalue1.1e-11
Seed eggNOG ortholog157072.XP_008881419.1
KEGG koko:K11304,ko:K11308
KEGG Pathwayko05166,map05166
Hectar predicted targeting categoryother localisation
GOsGO:0000123,GO:0002376,GO:0002520,GO:0003674,GO:0003824,GO:0004402,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006259,GO:0006281,GO:0006325,GO:0006355,GO:0006464,GO:0006473,GO:0006475,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007275,GO:0008080,GO:0008134,GO:0008150,GO:0008152,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009987,GO:0010224,GO:0010468,GO:0010485,GO:0010506,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0016043,GO:0016407,GO:0016410,GO:0016569,GO:0016570,GO:0016573,GO:0016740,GO:0016746,GO:0016747,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019538,GO:0030097,GO:0030099,GO:0030154,GO:0031248,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031329,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033554,GO:0034212,GO:0034641,GO:0034708,GO:0035064,GO:0035097,GO:0036211,GO:0042393,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043543,GO:0043967,GO:0043981,GO:0043982,GO:0043984,GO:0043995,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044665,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0046483,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048580,GO:0048583,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051173,GO:0051239,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051716,GO:0060255,GO:0061733,GO:0065007,GO:0070013,GO:0071339,GO:0071704,GO:0071840,GO:0072487,GO:0080090,GO:0090304,GO:0140030,GO:0140034,GO:1901360,GO:1901564,GO:1902493,GO:1902494,GO:1902562,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1990234,GO:2000026,GO:2000028,GO:2000112,GO:2000113,GO:2000241,GO:2001141
EggNOG free text desc.histone acetyltransferase activity
EggNOG OGsCOG5027@1,KOG2747@2759
EC2.3.1.48
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036
Exons1
Model size285
Cds size273
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816759.2734532-UTR-M-pyrifera_M_contig85101:204..2161622816759.2734532-UTR-M-pyrifera_M_contig85101:204..216Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig85101 205..216 +
1692278161.5899136-UTR-M-pyrifera_M_contig85101:204..2161692278161.5899136-UTR-M-pyrifera_M_contig85101:204..216Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig85101 205..216 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816759.288553-CDS-M-pyrifera_M_contig85101:216..4891622816759.288553-CDS-M-pyrifera_M_contig85101:216..489Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85101 217..489 +
1692278161.6039345-CDS-M-pyrifera_M_contig85101:216..4891692278161.6039345-CDS-M-pyrifera_M_contig85101:216..489Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85101 217..489 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig85101.19835.1prot_M-pyrifera_M_contig85101.19835.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig85101 217..489 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig85101.19835.1

>prot_M-pyrifera_M_contig85101.19835.1 ID=prot_M-pyrifera_M_contig85101.19835.1|Name=mRNA_M-pyrifera_M_contig85101.19835.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=91bp
MQLAERTSITPEDIVGTLRYHGLIRFVNGQHVICADPRIIDEKFQKLNKK
KGPLVDPAYLHWAPLPPPPHIRKDKWSIKSKLKGPHDDSM*
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mRNA from alignment at M-pyrifera_M_contig85101:205..489+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig85101.19835.1 ID=mRNA_M-pyrifera_M_contig85101.19835.1|Name=mRNA_M-pyrifera_M_contig85101.19835.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=285bp|location=Sequence derived from alignment at M-pyrifera_M_contig85101:205..489+ (Macrocystis pyrifera P11B4 male)
CAGATTTCGGTGATGCAGTTGGCAGAGCGTACCTCCATCACTCCGGAAGA CATTGTGGGGACGTTGCGGTATCATGGACTGATTCGGTTCGTGAATGGGC AACATGTGATTTGCGCAGATCCTCGCATTATTGACGAAAAGTTTCAGAAA CTCAACAAGAAGAAAGGCCCACTAGTTGACCCAGCGTACCTGCACTGGGC ACCTCTTCCTCCTCCACCACACATTAGAAAAGACAAGTGGAGCATTAAAT CCAAGCTCAAAGGACCGCATGATGATTCAATGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig85101:205..489+

>mRNA_M-pyrifera_M_contig85101.19835.1 ID=mRNA_M-pyrifera_M_contig85101.19835.1|Name=mRNA_M-pyrifera_M_contig85101.19835.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=546bp|location=Sequence derived from alignment at M-pyrifera_M_contig85101:205..489+ (Macrocystis pyrifera P11B4 male)
ATGCAGTTGGCAGAGCGTACCTCCATCACTCCGGAAGACATTGTGGGGAC
GTTGCGGTATCATGGACTGATTCGGTTCGTGAATGGGCAACATGTGATTT
GCGCAGATCCTCGCATTATTGACGAAAAGTTTCAGAAACTCAACAAGAAG
AAAGGCCCACTAGTTGACCCAGCGTACCTGCACTGGGCACCTCTTCCTCC
TCCACCACACATTAGAAAAGACAAGTGGAGCATTAAATCCAAGCTCAAAG
GACCGCATGATGATTCAATGTGAATGCAGTTGGCAGAGCGTACCTCCATC
ACTCCGGAAGACATTGTGGGGACGTTGCGGTATCATGGACTGATTCGGTT
CGTGAATGGGCAACATGTGATTTGCGCAGATCCTCGCATTATTGACGAAA
AGTTTCAGAAACTCAACAAGAAGAAAGGCCCACTAGTTGACCCAGCGTAC
CTGCACTGGGCACCTCTTCCTCCTCCACCACACATTAGAAAAGACAAGTG
GAGCATTAAATCCAAGCTCAAAGGACCGCATGATGATTCAATGTGA
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