mRNA_M-pyrifera_M_contig85058.19824.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig85058.19824.1
Unique NamemRNA_M-pyrifera_M_contig85058.19824.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig85058.19824.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig85058contigM-pyrifera_M_contig85058:23..382 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size361
Cds size348
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816758.7494547-CDS-M-pyrifera_M_contig85058:22..3701622816758.7494547-CDS-M-pyrifera_M_contig85058:22..370Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85058 23..370 +
1692278161.2890399-CDS-M-pyrifera_M_contig85058:22..3701692278161.2890399-CDS-M-pyrifera_M_contig85058:22..370Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85058 23..370 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816758.7628195-UTR-M-pyrifera_M_contig85058:370..3821622816758.7628195-UTR-M-pyrifera_M_contig85058:370..382Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig85058 371..382 +
1692278161.3006482-UTR-M-pyrifera_M_contig85058:370..3821692278161.3006482-UTR-M-pyrifera_M_contig85058:370..382Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig85058 371..382 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig85058.19824.1prot_M-pyrifera_M_contig85058.19824.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig85058 23..370 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig85058.19824.1

>prot_M-pyrifera_M_contig85058.19824.1 ID=prot_M-pyrifera_M_contig85058.19824.1|Name=mRNA_M-pyrifera_M_contig85058.19824.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=116bp
HSPLTLKRRAPRRGHTNTCYSSKNTIYSSGKTTRHSHGLVAGTLELLRCV
QDVAPPKFPFSTAAKEVLDQTLSHFFIQIIAWHLLGSSSRNWHLEHNVGS
TPTGDCRARAPFAGW*
back to top

mRNA from alignment at M-pyrifera_M_contig85058:23..382+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig85058.19824.1 ID=mRNA_M-pyrifera_M_contig85058.19824.1|Name=mRNA_M-pyrifera_M_contig85058.19824.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=360bp|location=Sequence derived from alignment at M-pyrifera_M_contig85058:23..382+ (Macrocystis pyrifera P11B4 male)
CACTCTCCGTTAACGCTAAAAAGGCGCGCGCCGCGACGCGGACACACCAA
CACATGTTACAGCAGCAAGAACACCATCTACAGCAGTGGTAAAACCACTA
GGCACTCCCATGGCCTGGTAGCGGGAACACTTGAACTTCTTCGCTGCGTT
CAGGATGTCGCCCCGCCCAAGTTTCCCTTCAGTACTGCCGCAAAGGAGGT
GCTCGATCAAACGCTGTCTCATTTTTTCATTCAGATTATTGCGTGGCACC
TTCTCGGGAGCAGCTCCAGAAACTGGCATCTCGAACACAATGTGGGAAGC
ACTCCAACCGGCGATTGCCGCGCGCGAGCTCCGTTTGCTGGTTGGTGAGG
TGGCTCGAGC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig85058:23..382+

>mRNA_M-pyrifera_M_contig85058.19824.1 ID=mRNA_M-pyrifera_M_contig85058.19824.1|Name=mRNA_M-pyrifera_M_contig85058.19824.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=696bp|location=Sequence derived from alignment at M-pyrifera_M_contig85058:23..382+ (Macrocystis pyrifera P11B4 male)
CACTCTCCGTTAACGCTAAAAAGGCGCGCGCCGCGACGCGGACACACCAA
CACATGTTACAGCAGCAAGAACACCATCTACAGCAGTGGTAAAACCACTA
GGCACTCCCATGGCCTGGTAGCGGGAACACTTGAACTTCTTCGCTGCGTT
CAGGATGTCGCCCCGCCCAAGTTTCCCTTCAGTACTGCCGCAAAGGAGGT
GCTCGATCAAACGCTGTCTCATTTTTTCATTCAGATTATTGCGTGGCACC
TTCTCGGGAGCAGCTCCAGAAACTGGCATCTCGAACACAATGTGGGAAGC
ACTCCAACCGGCGATTGCCGCGCGCGAGCTCCGTTTGCTGGTTGGTGACA
CTCTCCGTTAACGCTAAAAAGGCGCGCGCCGCGACGCGGACACACCAACA
CATGTTACAGCAGCAAGAACACCATCTACAGCAGTGGTAAAACCACTAGG
CACTCCCATGGCCTGGTAGCGGGAACACTTGAACTTCTTCGCTGCGTTCA
GGATGTCGCCCCGCCCAAGTTTCCCTTCAGTACTGCCGCAAAGGAGGTGC
TCGATCAAACGCTGTCTCATTTTTTCATTCAGATTATTGCGTGGCACCTT
CTCGGGAGCAGCTCCAGAAACTGGCATCTCGAACACAATGTGGGAAGCAC
TCCAACCGGCGATTGCCGCGCGCGAGCTCCGTTTGCTGGTTGGTGA
back to top