mRNA_M-pyrifera_M_contig85031.19819.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig85031.19819.1
Unique NamemRNA_M-pyrifera_M_contig85031.19819.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig85031.19819.1 vs. uniprot
Match: A0A6I6A7Z8_9PLAN (EF-hand domain-containing protein n=8 Tax=Gimesia TaxID=1649453 RepID=A0A6I6A7Z8_9PLAN)

HSP 1 Score: 223 bits (567), Expect = 1.640e-69
Identity = 135/143 (94.41%), Postives = 137/143 (95.80%), Query Frame = 1
Query:   10 MLMKYLIAFVAVAGLITTGVSSQQPRGRGDRDCHCPGGPPPDPFMVLFDTDQDGRISTNEMDQSAVALKNLDRDQNGSLTREELPRPPRPLEDQGHRRDDRHGPPPMERGRHQHAERPXXXXXXXXXXXXXXXXXXXRHGHDR 438
            MLMKYLIAFVAVAGLITTGVSSQQPRGRGDR+CH PGG PPDPFMVLFDTDQDGRISTNEMDQSAVALKNLDRDQ+GSLTREELPRPPRP EDQGHRRDDRHGPPPMERGRHQHA   XXXXXXXXXXXXXXXXXXXRHGHDR
Sbjct:    1 MLMKYLIAFVAVAGLITTGVSSQQPRGRGDRECHRPGGHPPDPFMVLFDTDQDGRISTNEMDQSAVALKNLDRDQDGSLTREELPRPPRPAEDQGHRRDDRHGPPPMERGRHQHAXXXXXXXXXXXXXXXXXXXXXXRHGHDR 143          
BLAST of mRNA_M-pyrifera_M_contig85031.19819.1 vs. uniprot
Match: A0A518A3A4_9PLAN (EF hand n=3 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518A3A4_9PLAN)

HSP 1 Score: 169 bits (427), Expect = 1.000e-48
Identity = 87/104 (83.65%), Postives = 95/104 (91.35%), Query Frame = 1
Query:   16 MKYLIAFVAVAGLITTGVSSQQPRGRGDRDCHCPGGPPPDPFMVLFDTDQDGRISTNEMDQSAVALKNLDRDQNGSLTREELPRPPRPLEDQGHRRDDRHGPPP 327
            MKYLIAFVA+AGLITTGVSSQQPRGRGD  C   GGPPPDP+MVLFDTDQDGRIS+ EMDQSAVALK LDR+Q+GSLTREELPRPPRP +++G RRDDRHGPPP
Sbjct:    1 MKYLIAFVAIAGLITTGVSSQQPRGRGDHGCQQGGGPPPDPYMVLFDTDQDGRISSEEMDQSAVALKKLDRNQDGSLTREELPRPPRPDDERG-RRDDRHGPPP 103          
BLAST of mRNA_M-pyrifera_M_contig85031.19819.1 vs. uniprot
Match: A6C5V1_9PLAN (EF-hand domain-containing protein n=7 Tax=Planctomycetaceae TaxID=126 RepID=A6C5V1_9PLAN)

HSP 1 Score: 134 bits (336), Expect = 1.600e-35
Identity = 74/128 (57.81%), Postives = 86/128 (67.19%), Query Frame = 1
Query:    1 GRAMLMKYLIAFVAVAGLITTGVSSQQPRGRGDRDCHCPGGPPPDPFMVLFDTDQDGRISTNEMDQSAVALKNLDRDQNGSLTREELPRPPRPLEDQ----------GHRRDDRHGPPPMERGRHQHA 354
            GR++LMK+LIAF AVA LI TGVSS  PR +GDR C  P GPPPDP+M+LFDTDQDG IS  E++QS   LK LDRDQ+G+LTR+E+PRPP P  D           G  R  RHG  PM   R Q A
Sbjct:   17 GRSILMKFLIAFAAVAVLIATGVSSHPPRDKGDRGCRRPEGPPPDPYMILFDTDQDGEISPREIEQSGSVLKKLDRDQSGTLTRDEMPRPPHPPRDXXXXXXXXRRPGANRPPRHGADPMPEQRQQKA 144          
BLAST of mRNA_M-pyrifera_M_contig85031.19819.1 vs. uniprot
Match: A0A517VBE5_9PLAN (EF-hand domain-containing protein n=1 Tax=Gimesia algae TaxID=2527971 RepID=A0A517VBE5_9PLAN)

HSP 1 Score: 120 bits (302), Expect = 1.140e-30
Identity = 61/91 (67.03%), Postives = 69/91 (75.82%), Query Frame = 1
Query:   16 MKYLIAFVAVAGLITTGVSSQQPRGRGDRDCHCPGGPPPDPFMVLFDTDQDGRISTNEMDQSAVALKNLDRDQNGSLTREELPRPPRPLED 288
            MK+LIAF AVA LI TGVSS  PR + DR C  P GPPPDPFM+LFDTDQDG IS  E++QS   LK LDRDQ+G+LTR E+PRPP P  D
Sbjct:    1 MKFLIAFAAVAILIATGVSSHPPRDQRDRGCQRPEGPPPDPFMILFDTDQDGEISPREIEQSGSVLKKLDRDQSGTLTRNEMPRPPHPPRD 91          
BLAST of mRNA_M-pyrifera_M_contig85031.19819.1 vs. uniprot
Match: A0A2E2C1D1_9PLAN (EF-hand domain-containing protein n=4 Tax=Planctomycetaceae TaxID=126 RepID=A0A2E2C1D1_9PLAN)

HSP 1 Score: 111 bits (277), Expect = 5.730e-27
Identity = 62/113 (54.87%), Postives = 76/113 (67.26%), Query Frame = 1
Query:   16 MKYLIAFVAVAGLITTGVSSQQPRGRGDRDCHCPGGPPPDPFMVLFDTDQDGRISTNEMDQSAVALKNLDRDQNGSLTREELPRPPRPLEDQGHRRDDRHGPPPMERGRHQHA 354
            MKYLI F AV  LI TGV+S  P G  D D   P GPP DPFM+LFDTD++G IST E++Q++  L+NLDRDQ+G+LTR+ELPRPP P       RD+    P  E GR  H+
Sbjct:    1 MKYLIVFAAVVALIATGVASHPPGGNEDHDNQRPEGPPRDPFMMLFDTDRNGEISTQEIEQASGVLRNLDRDQSGTLTRDELPRPPHPPRHHPPHRDEH---PRPEAGRPPHS 110          
BLAST of mRNA_M-pyrifera_M_contig85031.19819.1 vs. uniprot
Match: A0A518I999_9PLAN (EF hand n=2 Tax=Gimesia TaxID=1649453 RepID=A0A518I999_9PLAN)

HSP 1 Score: 96.3 bits (238), Expect = 5.020e-21
Identity = 50/94 (53.19%), Postives = 62/94 (65.96%), Query Frame = 1
Query:   16 MKYLIAFVAVAGLITTGVSSQQPRGRGDRDCHCPGGPPPDPFMVLFDTDQDGRISTNEMDQSAVALKNLDRDQNGSLTREELPRPPRPLEDQGH 297
            MK+ IAFVA+AGL+TTG+SSQ  + R DR+C  PG PPPDP + LFDTDQDG IS  E++QS   L               LPRPPRP +++GH
Sbjct:    1 MKFFIAFVAIAGLVTTGISSQ--KSRSDRNCGRPGPPPPDPILRLFDTDQDGEISAQELEQSEAVLXXXXXXXXXXXXXXXLPRPPRPEDERGH 92          
BLAST of mRNA_M-pyrifera_M_contig85031.19819.1 vs. uniprot
Match: A0A517WXI2_9PLAN (EF hand n=3 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517WXI2_9PLAN)

HSP 1 Score: 92.4 bits (228), Expect = 1.120e-19
Identity = 55/99 (55.56%), Postives = 66/99 (66.67%), Query Frame = 1
Query:    1 GRAMLMKYLIAFVAVA---GLITTGVSSQQPRGRGDRDCHCPGGPPPDPFMVLFDTDQDGRISTNEMDQSAVALKNLDRDQNGSLTREELPRPPRPLED 288
            GR   MK +IAF+A+A   GLITT VSSQ            P GPPPDP ++LFDT++D  IS  EM Q+   LK LDR+Q+G LTREELPRPPRP E+
Sbjct:   29 GRVHQMKKIIAFLAIAAIAGLITTSVSSQP--XXXXXXXXXPEGPPPDPLLMLFDTNRDEEISIQEMKQATEILKKLDRNQDGILTREELPRPPRPGEE 125          
BLAST of mRNA_M-pyrifera_M_contig85031.19819.1 vs. uniprot
Match: A0A356A7H5_9PLAN (EF-hand domain-containing protein n=2 Tax=Planctomycetaceae TaxID=126 RepID=A0A356A7H5_9PLAN)

HSP 1 Score: 83.6 bits (205), Expect = 1.630e-16
Identity = 48/103 (46.60%), Postives = 62/103 (60.19%), Query Frame = 1
Query:   16 MKYLIAFVAVAGLITTGVSSQQPRGRGDRDCHCPGGPPPDPFMVLFDTDQDGRISTNEMDQSAVALKNLDRDQNGSLTREELPRPPRPLEDQGHRRDDRHGPP 324
            MKY +A + +  L    V +Q PR         P GPPPDPF+ LFDTD++G +S +E+  S+  L   DR+Q+G LTR+ELPRPPRP E       DRH PP
Sbjct:    1 MKYALALLGIVSLSALVVYAQPPRP--------PAGPPPDPFLELFDTDENGELSASEIKASSQVLNTFDRNQDGKLTRDELPRPPRPGEH------DRHHPP 89          
BLAST of mRNA_M-pyrifera_M_contig85031.19819.1 vs. uniprot
Match: A0A3E0PL70_9BACT (EF-hand domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3E0PL70_9BACT)

HSP 1 Score: 74.3 bits (181), Expect = 4.380e-13
Identity = 50/112 (44.64%), Postives = 65/112 (58.04%), Query Frame = 1
Query:    1 GRAMLMKYLIAFVAVAGLITTGVSSQQPRGRGDRDCHCPGGPPPDPFMVLFDTDQDGRISTNEMDQSAVALKNLDRDQNGSLTREELPRPPRPLEDQGHRRDDRHGPPPMER 336
            G A  MK L+  V + G +     +Q P G GDR       PP DPF+ LFD D DG++S  E+D +A  L+  DR+ +G +T +ELPRPPRP    G RR D  GPPP +R
Sbjct:    5 GGAKSMKALLVVVVLGGSVALLAGAQMP-GWGDR-------PPRDPFLELFDADGDGQLSPAEIDGAAAILRQRDRNGDGIVTHDELPRPPRP----GERRRDG-GPPPRDR 103          
BLAST of mRNA_M-pyrifera_M_contig85031.19819.1 vs. uniprot
Match: A0A518CLW7_9PLAN (EF-hand domain-containing protein n=1 Tax=Polystyrenella longa TaxID=2528007 RepID=A0A518CLW7_9PLAN)

HSP 1 Score: 57.8 bits (138), Expect = 3.220e-7
Identity = 27/53 (50.94%), Postives = 40/53 (75.47%), Query Frame = 1
Query:  124 PPPDPFMVLFDTDQDGRISTNEMDQSAVALKNLDRDQNGSLTREELPRPPRPL 282
            PPP+PF+++FDTD+D +IS  E+  +A AL  LD+D++G L+ EE+P P R L
Sbjct:   94 PPPNPFLIVFDTDKDEKISAEEIAAAAEALSKLDKDEDGILSGEEIPDPIRDL 146          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig85031.19819.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6I6A7Z8_9PLAN1.640e-6994.41EF-hand domain-containing protein n=8 Tax=Gimesia ... [more]
A0A518A3A4_9PLAN1.000e-4883.65EF hand n=3 Tax=Gimesia panareensis TaxID=2527978 ... [more]
A6C5V1_9PLAN1.600e-3557.81EF-hand domain-containing protein n=7 Tax=Planctom... [more]
A0A517VBE5_9PLAN1.140e-3067.03EF-hand domain-containing protein n=1 Tax=Gimesia ... [more]
A0A2E2C1D1_9PLAN5.730e-2754.87EF-hand domain-containing protein n=4 Tax=Planctom... [more]
A0A518I999_9PLAN5.020e-2153.19EF hand n=2 Tax=Gimesia TaxID=1649453 RepID=A0A518... [more]
A0A517WXI2_9PLAN1.120e-1955.56EF hand n=3 Tax=Gimesia aquarii TaxID=2527964 RepI... [more]
A0A356A7H5_9PLAN1.630e-1646.60EF-hand domain-containing protein n=2 Tax=Planctom... [more]
A0A3E0PL70_9BACT4.380e-1344.64EF-hand domain-containing protein n=1 Tax=Planctom... [more]
A0A518CLW7_9PLAN3.220e-750.94EF-hand domain-containing protein n=1 Tax=Polystyr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig85031contigM-pyrifera_M_contig85031:423..869 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score131.7
Seed ortholog evalue2.7e-28
Seed eggNOG ortholog344747.PM8797T_16098
Hectar predicted targeting categorysignal peptide
EggNOG OGs2ADWZ@1,2IZNH@203682,313P3@2
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size447
Cds size438
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816758.552674-UTR-M-pyrifera_M_contig85031:422..4311622816758.552674-UTR-M-pyrifera_M_contig85031:422..431Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig85031 423..431 +
1692278161.1935456-UTR-M-pyrifera_M_contig85031:422..4311692278161.1935456-UTR-M-pyrifera_M_contig85031:422..431Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig85031 423..431 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816758.567392-CDS-M-pyrifera_M_contig85031:431..8691622816758.567392-CDS-M-pyrifera_M_contig85031:431..869Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85031 432..869 +
1692278161.2038972-CDS-M-pyrifera_M_contig85031:431..8691692278161.2038972-CDS-M-pyrifera_M_contig85031:431..869Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig85031 432..869 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig85031.19819.1prot_M-pyrifera_M_contig85031.19819.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig85031 432..869 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig85031.19819.1

>prot_M-pyrifera_M_contig85031.19819.1 ID=prot_M-pyrifera_M_contig85031.19819.1|Name=mRNA_M-pyrifera_M_contig85031.19819.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=146bp
MLMKYLIAFVAVAGLITTGVSSQQPRGRGDRDCHCPGGPPPDPFMVLFDT
DQDGRISTNEMDQSAVALKNLDRDQNGSLTREELPRPPRPLEDQGHRRDD
RHGPPPMERGRHQHAERPGHHGPPQRGERPDAHHERPRHGHDRHER
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mRNA from alignment at M-pyrifera_M_contig85031:423..869+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig85031.19819.1 ID=mRNA_M-pyrifera_M_contig85031.19819.1|Name=mRNA_M-pyrifera_M_contig85031.19819.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=447bp|location=Sequence derived from alignment at M-pyrifera_M_contig85031:423..869+ (Macrocystis pyrifera P11B4 male)
GGGAGAGCCATGCTGATGAAATACCTCATTGCGTTTGTTGCTGTCGCGGG ATTAATTACGACGGGCGTCTCATCTCAACAGCCACGTGGCAGAGGAGATC GTGACTGTCATTGCCCGGGAGGTCCGCCACCCGATCCGTTCATGGTCCTG TTCGATACCGATCAGGATGGCCGTATCTCCACAAACGAAATGGATCAGTC CGCAGTCGCCCTCAAGAATCTCGACCGTGATCAGAATGGCAGCCTGACCC GGGAAGAACTTCCCCGTCCTCCCCGCCCTCTAGAAGATCAGGGACATCGA CGCGATGATCGTCACGGACCGCCCCCCATGGAGCGCGGCAGACATCAACA TGCAGAACGTCCCGGACATCATGGCCCCCCGCAGCGGGGCGAACGACCAG ACGCCCATCATGAACGCCCGCGCCACGGGCACGATCGACATGAACGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig85031:423..869+

>mRNA_M-pyrifera_M_contig85031.19819.1 ID=mRNA_M-pyrifera_M_contig85031.19819.1|Name=mRNA_M-pyrifera_M_contig85031.19819.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=876bp|location=Sequence derived from alignment at M-pyrifera_M_contig85031:423..869+ (Macrocystis pyrifera P11B4 male)
ATGCTGATGAAATACCTCATTGCGTTTGTTGCTGTCGCGGGATTAATTAC
GACGGGCGTCTCATCTCAACAGCCACGTGGCAGAGGAGATCGTGACTGTC
ATTGCCCGGGAGGTCCGCCACCCGATCCGTTCATGGTCCTGTTCGATACC
GATCAGGATGGCCGTATCTCCACAAACGAAATGGATCAGTCCGCAGTCGC
CCTCAAGAATCTCGACCGTGATCAGAATGGCAGCCTGACCCGGGAAGAAC
TTCCCCGTCCTCCCCGCCCTCTAGAAGATCAGGGACATCGACGCGATGAT
CGTCACGGACCGCCCCCCATGGAGCGCGGCAGACATCAACATGCAGAACG
TCCCGGACATCATGGCCCCCCGCAGCGGGGCGAACGACCAGACGCCCATC
ATGAACGCCCGCGCCACGGGCACGATCGACATGAACGTATGCTGATGAAA
TACCTCATTGCGTTTGTTGCTGTCGCGGGATTAATTACGACGGGCGTCTC
ATCTCAACAGCCACGTGGCAGAGGAGATCGTGACTGTCATTGCCCGGGAG
GTCCGCCACCCGATCCGTTCATGGTCCTGTTCGATACCGATCAGGATGGC
CGTATCTCCACAAACGAAATGGATCAGTCCGCAGTCGCCCTCAAGAATCT
CGACCGTGATCAGAATGGCAGCCTGACCCGGGAAGAACTTCCCCGTCCTC
CCCGCCCTCTAGAAGATCAGGGACATCGACGCGATGATCGTCACGGACCG
CCCCCCATGGAGCGCGGCAGACATCAACATGCAGAACGTCCCGGACATCA
TGGCCCCCCGCAGCGGGGCGAACGACCAGACGCCCATCATGAACGCCCGC
GCCACGGGCACGATCGACATGAACGT
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