mRNA_M-pyrifera_M_contig84947.19794.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig84947.19794.1
Unique NamemRNA_M-pyrifera_M_contig84947.19794.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig84947.19794.1 vs. uniprot
Match: A0A7S4ISK4_9EUKA (Synaptosomal-associated protein 47 n=2 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4ISK4_9EUKA)

HSP 1 Score: 173 bits (438), Expect = 4.470e-48
Identity = 93/228 (40.79%), Postives = 136/228 (59.65%), Query Frame = 1 
Query:   25 FHRDELYYLLEYLRHYTPLYFKC---KNPDALQ-----------EELLDGRWGNARDSIRAGAAEQYEKVEVGVSEECVEIVDEVAHMGLEVRGRLEAQAHSIDRMDRSMLEADDNIMKGQRQMRGVESIGGQVVNLVQTPFLRKLGAYEAPDRDAGSQDSENYYDVPILAKHPNDSLQPSVLRFGDTHFVAVDCQ--DPSLPQLRTYNY--ADVCAVIMRARPYHLD 654
            +H  E Y L+ YL  ++P Y+     K+P   Q           + + +GRWG    S +   A++YEK +V ++E+C+E+ DE+  MGL+ RG LE  A  +DRM+R + E + N+ KG+R++  + S+GGQV  +V     +KLG Y+APDR AGSQ++E YYDVPIL KHPN  L+P VLRFG+  F        +  L Q+R Y Y  + V +V+ R RP H+D
Sbjct:  121 YHFYEAYTLIGYLMDHSPCYYHIPAKKSPQKHQSIDSYTKSQPKDAMSEGRWGTLASSFKENTADKYEKPDVKLAEKCLEMADEIYTMGLDTRGVLEDDARKLDRMERDLAETEYNVKKGKREVDAIGSVGGQVKKVVAGLTDKKLGEYQAPDRTAGSQEAEVYYDVPILVKHPNCDLEPGVLRFGEKEFYCATYPSGNQKLKQMRNYKYTYSQVSSVVARVRPLHVD 348
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BLAST of mRNA_M-pyrifera_M_contig84947.19794.1 vs. uniprot
Match: A0A7S4I9W5_9EUKA (Synaptosomal-associated protein 47 n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4I9W5_9EUKA)

HSP 1 Score: 94.4 bits (233), Expect = 8.390e-19
Identity = 68/243 (27.98%), Postives = 110/243 (45.27%), Query Frame = 1 
Query:   16 SGLFHRDELYYLLEYLRHYTPLYFKCKNPDALQE----------------ELLD------------GRWGNARDSIRAGAAEQYEKVEVGVSEECVEIVDEVAHMGLEVRGRLEAQAHSIDRMDRSMLEADDNIMKGQRQMRGVESIGGQVVNLVQTPFLRK--LGAYEAPDRDAGSQDSENYYDVPILAKHPNDSLQPSVLRFGDTHFVAVDCQDPSLPQLRTYNYADVCAVIMRARPYHLD 654
            +G  HRDE + L+ +L  + P Y    + D L +                + LD            GRWG   + I+    E+ E  ++ + +  + +  E+  +  +   R++ QA S+DR                  + G+ES  GQV N+  TP L K  +GAYE  D      D+E Y D+PIL K PND L+P ++RFG+     ++     + +  +Y Y ++  VI+RAR  H+D
Sbjct:  123 TGFMHRDETFNLIRHLWTFQPTYVHLSDSDMLSQIKDAFDVDDDVKEQVQQKLDASAGKKPSGEFSGRWGELAEEIKT--VEECEVPDLDIGKRSMRLAHEIQEINTQTLERMQQQAESLDRXXXXXXXXXXXXXXXXXXLDGLESGVGQVKNIF-TPNLHKSKVGAYEKSDHTV-KVDNEEYTDIPILIKQPNDFLEPGLMRFGEKRLRVLNGDREEIKKY-SYTYPNIHQVIIRARHQHID 360
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BLAST of mRNA_M-pyrifera_M_contig84947.19794.1 vs. uniprot
Match: D3B3I8_POLPP (Delta-aminolevulinic acid dehydratase n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3B3I8_POLPP)

HSP 1 Score: 79.0 bits (193), Expect = 2.150e-13
Identity = 51/168 (30.36%), Postives = 82/168 (48.81%), Query Frame = 1 
Query:  178 QYEKVEVGVSEECVEIVDEVAHMGLEVRGRLEAQAHSIDRMDRSMLEADDNIMKGQRQMRGVESIGGQVVNLVQTPFLRKLGAYEAPDRDAGS---------QDSENYYDVPILAKHPNDSLQPSVLRFGDTHFVAVDCQDPSLPQLRTYNYADVCAVIMRARPYHLD 654
            Q+ KV+   +++ + I  E    G+     L+ QA  ID+++ ++    +N+ KG++ ++G+ES GGQ+ N             ++PDRD            Q  E   D+ IL K  ND LQP  + F    FV +D      P   TY+Y  V  +++RAR +HLD
Sbjct:  226 QFTKVDTESTKQALRIAHETRETGIATMNELQYQAEMIDQIENNVENIHNNLDKGEKLLKGIESFGGQLAN--------SFSKDKSPDRDPHRPMDRSLKVRQREEPTTDIDILEKLQNDMLQPGYISFQADKFVILDGNKKPTPT-GTYSYDQVEFMVVRARHFHLD 384
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig84947.19794.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7S4ISK4_9EUKA4.470e-4840.79Synaptosomal-associated protein 47 n=2 Tax=Vannell... [more]
A0A7S4I9W5_9EUKA8.390e-1927.98Synaptosomal-associated protein 47 n=1 Tax=Vannell... [more]
D3B3I8_POLPP2.150e-1330.36Delta-aminolevulinic acid dehydratase n=1 Tax=Poly... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig84947contigM-pyrifera_M_contig84947:93..869 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score81.6
Seed ortholog evalue4.8e-13
Seed eggNOG ortholog5786.XP_003285589.1
KEGG koko:K11968,ko:K12380
KEGG Pathwayko04013,ko04014,map04013,map04014
Hectar predicted targeting categoryother localisation
EggNOG free text desc.GRAM domain
EggNOG OGs3X98E@554915,KOG1032@1,KOG1032@2759
EC2.3.2.31
COG Functional cat.S
Best tax levelAmoebozoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Exons3
Model size654
Cds size654
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig84947.19794.1prot_M-pyrifera_M_contig84947.19794.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig84947 93..869 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816756.995339-CDS-M-pyrifera_M_contig84947:92..2061622816756.995339-CDS-M-pyrifera_M_contig84947:92..206Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84947 93..206 +
1692278160.201286-CDS-M-pyrifera_M_contig84947:92..2061692278160.201286-CDS-M-pyrifera_M_contig84947:92..206Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84947 93..206 +
1622816757.007321-CDS-M-pyrifera_M_contig84947:266..7481622816757.007321-CDS-M-pyrifera_M_contig84947:266..748Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84947 267..748 +
1692278160.215417-CDS-M-pyrifera_M_contig84947:266..7481692278160.215417-CDS-M-pyrifera_M_contig84947:266..748Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84947 267..748 +
1622816757.0218809-CDS-M-pyrifera_M_contig84947:811..8691622816757.0218809-CDS-M-pyrifera_M_contig84947:811..869Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84947 812..869 +
1692278160.2269006-CDS-M-pyrifera_M_contig84947:811..8691692278160.2269006-CDS-M-pyrifera_M_contig84947:811..869Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84947 812..869 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig84947.19794.1

>prot_M-pyrifera_M_contig84947.19794.1 ID=prot_M-pyrifera_M_contig84947.19794.1|Name=mRNA_M-pyrifera_M_contig84947.19794.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=218bp
TSRLLSGLFHRDELYYLLEYLRHYTPLYFKCKNPDALQEELLDGRWGNAR
DSIRAGAAEQYEKVEVGVSEECVEIVDEVAHMGLEVRGRLEAQAHSIDRM
DRSMLEADDNIMKGQRQMRGVESIGGQVVNLVQTPFLRKLGAYEAPDRDA
GSQDSENYYDVPILAKHPNDSLQPSVLRFGDTHFVAVDCQDPSLPQLRTY
NYADVCAVIMRARPYHLD
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mRNA from alignment at M-pyrifera_M_contig84947:93..869+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig84947.19794.1 ID=mRNA_M-pyrifera_M_contig84947.19794.1|Name=mRNA_M-pyrifera_M_contig84947.19794.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=777bp|location=Sequence derived from alignment at M-pyrifera_M_contig84947:93..869+ (Macrocystis pyrifera P11B4 male)
ACCTCACGCCTCTTGTCAGGCCTCTTCCACCGAGACGAGCTGTACTACCT
TCTGGAGTATCTTCGTCACTACACACCGCTCTACTTCAAGTGCAAGAACC
CCGATGCTCTACAAGTAGGAACTGCAGAGGTCCGAGCAGCGGTTGCCTCG
CTTCGGGAAGAAGATCCTGATGAGGAGGAGCTCCTGGACGGGAGGTGGGG
TAATGCACGCGACTCCATACGTGCTGGTGCTGCAGAGCAGTACGAGAAGG
TGGAGGTGGGTGTCAGCGAGGAGTGCGTCGAGATCGTAGATGAAGTCGCC
CACATGGGCCTAGAAGTGAGAGGTAGGCTGGAAGCGCAAGCCCACTCGAT
TGATCGCATGGACAGAAGCATGTTGGAGGCGGATGATAACATCATGAAGG
GGCAGAGGCAGATGCGAGGCGTAGAGAGCATTGGTGGCCAAGTGGTCAAT
TTGGTGCAGACCCCGTTCCTTCGGAAGCTCGGAGCTTACGAGGCACCCGA
CCGAGATGCTGGCTCACAAGACTCTGAGAACTACTACGACGTACCCATCC
TGGCGAAGCACCCAAACGACTCCCTGCAACCCTCCGTTCTTCGCTTTGGT
GACACCCACTTCGTGGCAGTGGATTGCCAAGATCCTTCACTCCCACAGCT
GCGAACGTATAGGTACTTGCCACTTGGGGCTCAGGCGAGTGGCTAGCCCA
TACTTACCTACGCGCCCAGGTACAACTACGCCGACGTGTGCGCCGTGATC
ATGCGGGCTCGCCCGTATCACCTCGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig84947:93..869+

>mRNA_M-pyrifera_M_contig84947.19794.1 ID=mRNA_M-pyrifera_M_contig84947.19794.1|Name=mRNA_M-pyrifera_M_contig84947.19794.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1308bp|location=Sequence derived from alignment at M-pyrifera_M_contig84947:93..869+ (Macrocystis pyrifera P11B4 male)
ACCTCACGCCTCTTGTCAGGCCTCTTCCACCGAGACGAGCTGTACTACCT
TCTGGAGTATCTTCGTCACTACACACCGCTCTACTTCAAGTGCAAGAACC
CCGATGCTCTACAAACCTCACGCCTCTTGTCAGGCCTCTTCCACCGAGAC
GAGCTGTACTACCTTCTGGAGTATCTTCGTCACTACACACCGCTCTACTT
CAAGTGCAAGAACCCCGATGCTCTACAAGAGGAGCTCCTGGACGGGAGGT
GGGGTAATGCACGCGACTCCATACGTGCTGGTGCTGCAGAGCAGTACGAG
AAGGTGGAGGTGGGTGTCAGCGAGGAGTGCGTCGAGATCGTAGATGAAGT
CGCCCACATGGGCCTAGAAGTGAGAGGTAGGCTGGAAGCGCAAGCCCACT
CGATTGATCGCATGGACAGAAGCATGTTGGAGGCGGATGATAACATCATG
AAGGGGCAGAGGCAGATGCGAGGCGTAGAGAGCATTGGTGGCCAAGTGGT
CAATTTGGTGCAGACCCCGTTCCTTCGGAAGCTCGGAGCTTACGAGGCAC
CCGACCGAGATGCTGGCTCACAAGACTCTGAGAACTACTACGACGTACCC
ATCCTGGCGAAGCACCCAAACGACTCCCTGCAACCCTCCGTTCTTCGCTT
TGGTGACACCCACTTCGTGGCAGTGGATTGCCAAGATCCTTCACTCCCAC
AGCTGCGAACGAGGAGCTCCTGGACGGGAGGTGGGGTAATGCACGCGACT
CCATACGTGCTGGTGCTGCAGAGCAGTACGAGAAGGTGGAGGTGGGTGTC
AGCGAGGAGTGCGTCGAGATCGTAGATGAAGTCGCCCACATGGGCCTAGA
AGTGAGAGGTAGGCTGGAAGCGCAAGCCCACTCGATTGATCGCATGGACA
GAAGCATGTTGGAGGCGGATGATAACATCATGAAGGGGCAGAGGCAGATG
CGAGGCGTAGAGAGCATTGGTGGCCAAGTGGTCAATTTGGTGCAGACCCC
GTTCCTTCGGAAGCTCGGAGCTTACGAGGCACCCGACCGAGATGCTGGCT
CACAAGACTCTGAGAACTACTACGACGTACCCATCCTGGCGAAGCACCCA
AACGACTCCCTGCAACCCTCCGTTCTTCGCTTTGGTGACACCCACTTCGT
GGCAGTGGATTGCCAAGATCCTTCACTCCCACAGCTGCGAACGTACAACT
ACGCCGACGTGTGCGCCGTGATCATGCGGGCTCGCCCGTATCACCTCGAC
GTACAACTACGCCGACGTGTGCGCCGTGATCATGCGGGCTCGCCCGTATC
ACCTCGAC
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