mRNA_M-pyrifera_M_contig8479.19756.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8479.19756.1
Unique NamemRNA_M-pyrifera_M_contig8479.19756.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8479.19756.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8479contigM-pyrifera_M_contig8479:11622..11795 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size174
Cds size171
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816754.808585-CDS-M-pyrifera_M_contig8479:11621..117921622816754.808585-CDS-M-pyrifera_M_contig8479:11621..11792Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8479 11622..11792 -
1692278158.8033192-CDS-M-pyrifera_M_contig8479:11621..117921692278158.8033192-CDS-M-pyrifera_M_contig8479:11621..11792Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8479 11622..11792 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816754.8217697-UTR-M-pyrifera_M_contig8479:11792..117951622816754.8217697-UTR-M-pyrifera_M_contig8479:11792..11795Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8479 11793..11795 -
1692278158.8152626-UTR-M-pyrifera_M_contig8479:11792..117951692278158.8152626-UTR-M-pyrifera_M_contig8479:11792..11795Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8479 11793..11795 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8479.19756.1prot_M-pyrifera_M_contig8479.19756.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8479 11622..11792 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8479.19756.1

>prot_M-pyrifera_M_contig8479.19756.1 ID=prot_M-pyrifera_M_contig8479.19756.1|Name=mRNA_M-pyrifera_M_contig8479.19756.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=57bp
MSAFRRYLDSRARGWAHDPELADFYTLPHVADPSTHTIFGPVFQDSWLVR
RPGERRN
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mRNA from alignment at M-pyrifera_M_contig8479:11622..11795-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8479.19756.1 ID=mRNA_M-pyrifera_M_contig8479.19756.1|Name=mRNA_M-pyrifera_M_contig8479.19756.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=174bp|location=Sequence derived from alignment at M-pyrifera_M_contig8479:11622..11795- (Macrocystis pyrifera P11B4 male)
TCAATGTCAGCTTTTCGGCGCTACCTGGACAGCAGGGCGAGAGGATGGGC
GCACGACCCGGAACTAGCGGACTTTTACACTCTTCCCCATGTTGCTGATC
CGTCGACCCATACCATATTTGGGCCAGTTTTTCAAGACTCTTGGTTGGTA
AGGAGGCCCGGTGAACGCCGAAAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8479:11622..11795-

>mRNA_M-pyrifera_M_contig8479.19756.1 ID=mRNA_M-pyrifera_M_contig8479.19756.1|Name=mRNA_M-pyrifera_M_contig8479.19756.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=342bp|location=Sequence derived from alignment at M-pyrifera_M_contig8479:11622..11795- (Macrocystis pyrifera P11B4 male)
ATGTCAGCTTTTCGGCGCTACCTGGACAGCAGGGCGAGAGGATGGGCGCA
CGACCCGGAACTAGCGGACTTTTACACTCTTCCCCATGTTGCTGATCCGT
CGACCCATACCATATTTGGGCCAGTTTTTCAAGACTCTTGGTTGGTAAGG
AGGCCCGGTGAACGCCGAAACATGTCAGCTTTTCGGCGCTACCTGGACAG
CAGGGCGAGAGGATGGGCGCACGACCCGGAACTAGCGGACTTTTACACTC
TTCCCCATGTTGCTGATCCGTCGACCCATACCATATTTGGGCCAGTTTTT
CAAGACTCTTGGTTGGTAAGGAGGCCCGGTGAACGCCGAAAC
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