mRNA_M-pyrifera_M_contig84506.19706.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig84506.19706.1
Unique NamemRNA_M-pyrifera_M_contig84506.19706.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig84506.19706.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig84506contigM-pyrifera_M_contig84506:9..383 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size375
Cds size363
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816752.5811226-CDS-M-pyrifera_M_contig84506:8..3711622816752.5811226-CDS-M-pyrifera_M_contig84506:8..371Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84506 9..371 -
1692278157.55532-CDS-M-pyrifera_M_contig84506:8..3711692278157.55532-CDS-M-pyrifera_M_contig84506:8..371Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84506 9..371 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816752.5925255-UTR-M-pyrifera_M_contig84506:371..3831622816752.5925255-UTR-M-pyrifera_M_contig84506:371..383Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig84506 372..383 -
1692278157.5683274-UTR-M-pyrifera_M_contig84506:371..3831692278157.5683274-UTR-M-pyrifera_M_contig84506:371..383Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig84506 372..383 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig84506.19706.1prot_M-pyrifera_M_contig84506.19706.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig84506 9..371 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig84506.19706.1

>prot_M-pyrifera_M_contig84506.19706.1 ID=prot_M-pyrifera_M_contig84506.19706.1|Name=mRNA_M-pyrifera_M_contig84506.19706.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=121bp
MERDVLHIPTTAQSILDLHWHPHHPSLLAIAGEDKHVHLLDTTTKSDIRL
HDVNHGHHFAVSTVAWSSDGHYLASTDRIRPTILLWSYPNPTSTPPIVLH
APHVRIFSSLCWHPTQPRLAA
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mRNA from alignment at M-pyrifera_M_contig84506:9..383-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig84506.19706.1 ID=mRNA_M-pyrifera_M_contig84506.19706.1|Name=mRNA_M-pyrifera_M_contig84506.19706.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=375bp|location=Sequence derived from alignment at M-pyrifera_M_contig84506:9..383- (Macrocystis pyrifera P11B4 male)
GATGGTGAGCAAATGGAACGTGATGTTCTCCACATTCCAACCACAGCCCA
ATCCATTCTTGATCTCCATTGGCATCCCCACCACCCATCTCTCCTTGCAA
TCGCTGGAGAAGACAAGCATGTTCATCTCTTGGACACGACTACAAAATCA
GACATCCGTCTTCACGACGTCAACCATGGCCATCATTTCGCAGTCTCCAC
AGTTGCATGGAGCTCTGATGGACACTACCTTGCCTCCACAGACCGCATTC
GCCCCACAATCCTCCTCTGGTCCTACCCCAACCCCACCTCAACCCCTCCA
ATCGTCCTCCATGCCCCACATGTTCGCATCTTCTCCTCTCTCTGCTGGCA
TCCAACCCAACCACGCCTTGCAGCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig84506:9..383-

>mRNA_M-pyrifera_M_contig84506.19706.1 ID=mRNA_M-pyrifera_M_contig84506.19706.1|Name=mRNA_M-pyrifera_M_contig84506.19706.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=726bp|location=Sequence derived from alignment at M-pyrifera_M_contig84506:9..383- (Macrocystis pyrifera P11B4 male)
ATGGAACGTGATGTTCTCCACATTCCAACCACAGCCCAATCCATTCTTGA
TCTCCATTGGCATCCCCACCACCCATCTCTCCTTGCAATCGCTGGAGAAG
ACAAGCATGTTCATCTCTTGGACACGACTACAAAATCAGACATCCGTCTT
CACGACGTCAACCATGGCCATCATTTCGCAGTCTCCACAGTTGCATGGAG
CTCTGATGGACACTACCTTGCCTCCACAGACCGCATTCGCCCCACAATCC
TCCTCTGGTCCTACCCCAACCCCACCTCAACCCCTCCAATCGTCCTCCAT
GCCCCACATGTTCGCATCTTCTCCTCTCTCTGCTGGCATCCAACCCAACC
ACGCCTTGCAGCTATGGAACGTGATGTTCTCCACATTCCAACCACAGCCC
AATCCATTCTTGATCTCCATTGGCATCCCCACCACCCATCTCTCCTTGCA
ATCGCTGGAGAAGACAAGCATGTTCATCTCTTGGACACGACTACAAAATC
AGACATCCGTCTTCACGACGTCAACCATGGCCATCATTTCGCAGTCTCCA
CAGTTGCATGGAGCTCTGATGGACACTACCTTGCCTCCACAGACCGCATT
CGCCCCACAATCCTCCTCTGGTCCTACCCCAACCCCACCTCAACCCCTCC
AATCGTCCTCCATGCCCCACATGTTCGCATCTTCTCCTCTCTCTGCTGGC
ATCCAACCCAACCACGCCTTGCAGCT
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