mRNA_M-pyrifera_M_contig84368.19676.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig84368.19676.1
Unique NamemRNA_M-pyrifera_M_contig84368.19676.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig84368.19676.1 vs. uniprot
Match: A0A819YKZ9_9BILA (Hypothetical protein n=16 Tax=Rotaria socialis TaxID=392032 RepID=A0A819YKZ9_9BILA)

HSP 1 Score: 51.6 bits (122), Expect = 7.720e-5
Identity = 39/138 (28.26%), Postives = 63/138 (45.65%), Query Frame = 1 
Query:    7 GPAEASGMIEPGDRLVSADGRPLQGLPLAEVLAALQEVGNRARWVLEFQPG------RGEAQFRPSGSDFSVVLNALEPLGAVLDERLSGAESGFGAFAGSSGVPLGESRTKSQLA-RARVVSVGDRLVGIDGISLLG 399
            G AE SG+++PGDR++S +G+ L+G+ L +    ++E  NR  + +EF          G  Q +    +  + L+   P  A  DE                 VP+     +  +A R  ++  GDRL+ ID  SL G
Sbjct:  579 GVAERSGILQPGDRILSINGQQLEGMTLEDARTIIKESNNRMHFEIEFDVADSVMLSSGTCQVKILRKNLDLGLSVTYPRXARTDE-----------------VPIINDVKRGSIAYRCGMIQSGDRLLSIDTHSLRG 699
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig84368.19676.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A819YKZ9_9BILA7.720e-528.26Hypothetical protein n=16 Tax=Rotaria socialis Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig84368contigM-pyrifera_M_contig84368:44..508 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size420
Cds size393
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig84368.19676.1prot_M-pyrifera_M_contig84368.19676.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig84368 71..508 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816751.11489-UTR-M-pyrifera_M_contig84368:43..701622816751.11489-UTR-M-pyrifera_M_contig84368:43..70Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig84368 44..70 +
1692278156.7258055-UTR-M-pyrifera_M_contig84368:43..701692278156.7258055-UTR-M-pyrifera_M_contig84368:43..70Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig84368 44..70 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816751.129956-CDS-M-pyrifera_M_contig84368:70..2951622816751.129956-CDS-M-pyrifera_M_contig84368:70..295Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84368 71..295 +
1692278156.740726-CDS-M-pyrifera_M_contig84368:70..2951692278156.740726-CDS-M-pyrifera_M_contig84368:70..295Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84368 71..295 +
1622816751.1419063-CDS-M-pyrifera_M_contig84368:340..5081622816751.1419063-CDS-M-pyrifera_M_contig84368:340..508Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84368 341..508 +
1692278156.7560487-CDS-M-pyrifera_M_contig84368:340..5081692278156.7560487-CDS-M-pyrifera_M_contig84368:340..508Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84368 341..508 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig84368.19676.1

>prot_M-pyrifera_M_contig84368.19676.1 ID=prot_M-pyrifera_M_contig84368.19676.1|Name=mRNA_M-pyrifera_M_contig84368.19676.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=131bp
MIEPGDRLVSADGRPLQGLPLAEVLAALQEVGNRARWVLEFQPGRGEAQF
RPSGSDFSVVLNALEPLGAVLDERLSGAESGFGAFAGSSGVPLGESRTKS
QLARARVVSVGDRLVGIDGISLLGLPSETAL
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mRNA from alignment at M-pyrifera_M_contig84368:44..508+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig84368.19676.1 ID=mRNA_M-pyrifera_M_contig84368.19676.1|Name=mRNA_M-pyrifera_M_contig84368.19676.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=465bp|location=Sequence derived from alignment at M-pyrifera_M_contig84368:44..508+ (Macrocystis pyrifera P11B4 male)
TCGCACGGGCCCGCAGAGGCGAGTGGTATGATTGAGCCTGGCGATCGCCT
TGTTTCTGCGGACGGGAGGCCGCTACAGGGGTTGCCACTCGCAGAGGTGT
TGGCGGCGCTGCAGGAGGTCGGGAATCGCGCACGATGGGTGCTGGAATTC
CAGCCAGGCCGCGGGGAGGCGCAGTTTCGTCCGAGCGGTAGCGATTTCTC
GGTGGTGCTCAATGCGTTGGAGCCACTGGGCGCTGTGCTGGACGAACGGC
TCGTGGTGCGGGGCTTTCACGCCATGGACTCTGCCGCAGACCTCGAGAGC
GGCGCGGAAAGCGGGTTTGGCGCATTCGCCGGCAGTTCAGGCGTGCCTCT
GGGAGAGAGCCGGACCAAATCGCAGCTGGCGCGGGCCAGGGTGGTGTCGG
TCGGAGACCGGCTCGTTGGGATCGACGGAATCTCGCTATTGGGCCTCCCT
TCTGAAACGGCGCTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig84368:44..508+

>mRNA_M-pyrifera_M_contig84368.19676.1 ID=mRNA_M-pyrifera_M_contig84368.19676.1|Name=mRNA_M-pyrifera_M_contig84368.19676.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=786bp|location=Sequence derived from alignment at M-pyrifera_M_contig84368:44..508+ (Macrocystis pyrifera P11B4 male)
ATGATTGAGCCTGGCGATCGCCTTGTTTCTGCGGACGGGAGGCCGCTACA
GGGGTTGCCACTCGCAGAGGTGTTGGCGGCGCTGCAGGAGGTCGGGAATC
GCGCACGATGGGTGCTGGAATTCCAGCCAGGCCGCGGGGAGGCGCAGTTT
CGTCCGAGCGGTAGCGATTTCTCGGTGGTGCTCAATGCGTTGGAGCCACT
GGGCGCTGTGCTGGACGAACGGCTCATGATTGAGCCTGGCGATCGCCTTG
TTTCTGCGGACGGGAGGCCGCTACAGGGGTTGCCACTCGCAGAGGTGTTG
GCGGCGCTGCAGGAGGTCGGGAATCGCGCACGATGGGTGCTGGAATTCCA
GCCAGGCCGCGGGGAGGCGCAGTTTCGTCCGAGCGGTAGCGATTTCTCGG
TGGTGCTCAATGCGTTGGAGCCACTGGGCGCTGTGCTGGACGAACGGCTC
AGCGGCGCGGAAAGCGGGTTTGGCGCATTCGCCGGCAGTTCAGGCGTGCC
TCTGGGAGAGAGCCGGACCAAATCGCAGCTGGCGCGGGCCAGGGTGGTGT
CGGTCGGAGACCGGCTCGTTGGGATCGACGGAATCTCGCTATTGGGCCTC
CCTTCTGAAACGGCGCTTAGCGGCGCGGAAAGCGGGTTTGGCGCATTCGC
CGGCAGTTCAGGCGTGCCTCTGGGAGAGAGCCGGACCAAATCGCAGCTGG
CGCGGGCCAGGGTGGTGTCGGTCGGAGACCGGCTCGTTGGGATCGACGGA
ATCTCGCTATTGGGCCTCCCTTCTGAAACGGCGCTT
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