mRNA_M-pyrifera_M_contig84357.19674.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig84357.19674.1
Unique NamemRNA_M-pyrifera_M_contig84357.19674.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig84357.19674.1 vs. uniprot
Match: A0A2E3MHC8_9GAMM (Uncharacterized protein n=1 Tax=Legionellales bacterium TaxID=2026754 RepID=A0A2E3MHC8_9GAMM)

HSP 1 Score: 123 bits (309), Expect = 8.440e-33
Identity = 60/162 (37.04%), Postives = 94/162 (58.02%), Query Frame = 1 
Query:   13 IIAILLLSLITSNVAMAKKKVRVYPRGCSPENTQFEYDYLLLGATPKPEADPYSVFVFRNMTHQNILVGQAPEQNDMGAHFNSVIEPNRFSAMLIERPGFKLVCYDTMGSEPWPVPCNQVLKACQLRVSPIMASARGQYWIAQNARSQRSLFGELRGHGIYP 498
            I+ ++ LS      A A +K R YPRGC+ ++ Q+  D+++LGATP      Y VFVF+N+++  I +   P  N       S ++P  +SA+L+    F L C  +      P  C+ V++AC+L VSP+M S++G+YWI +N  S+ +LF  +R  GIYP
Sbjct:    6 ILGLVALSFSYLTTASAAQKERFYPRGCNDKSVQYSGDHVILGATPSDHK--YRVFVFKNISYDPISLHYTPPANKFSYSMVSTLQPELWSALLVNEQNFTLTCKSSNDYYGMPYNCSDVIRACELAVSPVMLSSQGEYWITENNHSKGALFRNIRSQGIYP 165
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig84357.19674.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2E3MHC8_9GAMM8.440e-3337.04Uncharacterized protein n=1 Tax=Legionellales bact... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig84357contigM-pyrifera_M_contig84357:248..748 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size501
Cds size501
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816751.033012-CDS-M-pyrifera_M_contig84357:247..7481622816751.033012-CDS-M-pyrifera_M_contig84357:247..748Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84357 248..748 -
1692278156.675131-CDS-M-pyrifera_M_contig84357:247..7481692278156.675131-CDS-M-pyrifera_M_contig84357:247..748Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84357 248..748 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig84357.19674.1prot_M-pyrifera_M_contig84357.19674.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig84357 248..748 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig84357.19674.1

>prot_M-pyrifera_M_contig84357.19674.1 ID=prot_M-pyrifera_M_contig84357.19674.1|Name=mRNA_M-pyrifera_M_contig84357.19674.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=167bp
MRKRIIAILLLSLITSNVAMAKKKVRVYPRGCSPENTQFEYDYLLLGATP
KPEADPYSVFVFRNMTHQNILVGQAPEQNDMGAHFNSVIEPNRFSAMLIE
RPGFKLVCYDTMGSEPWPVPCNQVLKACQLRVSPIMASARGQYWIAQNAR
SQRSLFGELRGHGIYP*
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mRNA from alignment at M-pyrifera_M_contig84357:248..748-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig84357.19674.1 ID=mRNA_M-pyrifera_M_contig84357.19674.1|Name=mRNA_M-pyrifera_M_contig84357.19674.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=501bp|location=Sequence derived from alignment at M-pyrifera_M_contig84357:248..748- (Macrocystis pyrifera P11B4 male)
ATGCGAAAGCGCATAATCGCTATTCTTTTACTCAGTTTGATAACTAGCAA
TGTAGCAATGGCCAAGAAAAAAGTTCGAGTCTACCCGCGTGGCTGTAGTC
CTGAAAATACCCAATTCGAATACGATTACCTTCTTCTAGGTGCTACACCA
AAGCCAGAAGCGGATCCCTACAGCGTGTTTGTTTTTAGAAACATGACTCA
CCAAAATATTTTAGTCGGCCAGGCGCCAGAGCAAAATGATATGGGTGCAC
ACTTTAATAGTGTCATTGAACCCAATCGATTTTCTGCGATGCTAATTGAA
AGGCCTGGTTTTAAATTAGTATGCTACGATACCATGGGAAGTGAACCCTG
GCCGGTACCTTGCAATCAAGTACTGAAGGCTTGTCAGCTTCGAGTATCAC
CGATTATGGCAAGTGCACGTGGACAATATTGGATAGCACAAAATGCTAGA
TCGCAGCGCTCTCTCTTTGGTGAATTGCGCGGCCATGGAATATATCCTTA
A
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig84357:248..748-

>mRNA_M-pyrifera_M_contig84357.19674.1 ID=mRNA_M-pyrifera_M_contig84357.19674.1|Name=mRNA_M-pyrifera_M_contig84357.19674.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1002bp|location=Sequence derived from alignment at M-pyrifera_M_contig84357:248..748- (Macrocystis pyrifera P11B4 male)
ATGCGAAAGCGCATAATCGCTATTCTTTTACTCAGTTTGATAACTAGCAA
TGTAGCAATGGCCAAGAAAAAAGTTCGAGTCTACCCGCGTGGCTGTAGTC
CTGAAAATACCCAATTCGAATACGATTACCTTCTTCTAGGTGCTACACCA
AAGCCAGAAGCGGATCCCTACAGCGTGTTTGTTTTTAGAAACATGACTCA
CCAAAATATTTTAGTCGGCCAGGCGCCAGAGCAAAATGATATGGGTGCAC
ACTTTAATAGTGTCATTGAACCCAATCGATTTTCTGCGATGCTAATTGAA
AGGCCTGGTTTTAAATTAGTATGCTACGATACCATGGGAAGTGAACCCTG
GCCGGTACCTTGCAATCAAGTACTGAAGGCTTGTCAGCTTCGAGTATCAC
CGATTATGGCAAGTGCACGTGGACAATATTGGATAGCACAAAATGCTAGA
TCGCAGCGCTCTCTCTTTGGTGAATTGCGCGGCCATGGAATATATCCTTA
AATGCGAAAGCGCATAATCGCTATTCTTTTACTCAGTTTGATAACTAGCA
ATGTAGCAATGGCCAAGAAAAAAGTTCGAGTCTACCCGCGTGGCTGTAGT
CCTGAAAATACCCAATTCGAATACGATTACCTTCTTCTAGGTGCTACACC
AAAGCCAGAAGCGGATCCCTACAGCGTGTTTGTTTTTAGAAACATGACTC
ACCAAAATATTTTAGTCGGCCAGGCGCCAGAGCAAAATGATATGGGTGCA
CACTTTAATAGTGTCATTGAACCCAATCGATTTTCTGCGATGCTAATTGA
AAGGCCTGGTTTTAAATTAGTATGCTACGATACCATGGGAAGTGAACCCT
GGCCGGTACCTTGCAATCAAGTACTGAAGGCTTGTCAGCTTCGAGTATCA
CCGATTATGGCAAGTGCACGTGGACAATATTGGATAGCACAAAATGCTAG
ATCGCAGCGCTCTCTCTTTGGTGAATTGCGCGGCCATGGAATATATCCTT
AA
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