mRNA_M-pyrifera_M_contig84356.19673.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig84356.19673.1
Unique NamemRNA_M-pyrifera_M_contig84356.19673.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig84356.19673.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig84356contigM-pyrifera_M_contig84356:132..698 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score68.2
Seed ortholog evalue4.8e-09
Seed eggNOG ortholog3055.EDO99314
Hectar predicted targeting categoryother localisation
EggNOG free text desc.phosphate acetyltransferase
EggNOG OGs2QW25@2759,34PA6@3041,37SWP@33090,COG0280@1
COG Functional cat.I
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size567
Cds size567
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816751.0009134-CDS-M-pyrifera_M_contig84356:131..6981622816751.0009134-CDS-M-pyrifera_M_contig84356:131..698Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84356 132..698 +
1692278156.6586065-CDS-M-pyrifera_M_contig84356:131..6981692278156.6586065-CDS-M-pyrifera_M_contig84356:131..698Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84356 132..698 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig84356.19673.1prot_M-pyrifera_M_contig84356.19673.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig84356 132..698 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig84356.19673.1

>prot_M-pyrifera_M_contig84356.19673.1 ID=prot_M-pyrifera_M_contig84356.19673.1|Name=mRNA_M-pyrifera_M_contig84356.19673.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=189bp
RLSVKGAHLVFRAAMVQFPDSALVTAMYAVFVYHNTPYVDLALTLLRHAA
MLNPAIDVRFLIFSTTVQWQRAAAGGGGKRMNTIRELELKQNRERALSNH
TRALALVRAFWASMARQYLKLPEEDATKQLRDINSAVQSARRGYVQLLAN
MPEPTPDIVRMYAAFVRDLENDPKKAVLLFRHADSLESM
back to top

mRNA from alignment at M-pyrifera_M_contig84356:132..698+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig84356.19673.1 ID=mRNA_M-pyrifera_M_contig84356.19673.1|Name=mRNA_M-pyrifera_M_contig84356.19673.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=567bp|location=Sequence derived from alignment at M-pyrifera_M_contig84356:132..698+ (Macrocystis pyrifera P11B4 male)
AGGTTGAGTGTGAAGGGAGCTCACCTGGTGTTCCGGGCGGCCATGGTGCA
GTTCCCTGACTCCGCCCTGGTCACCGCCATGTACGCAGTGTTTGTGTACC
ACAACACTCCGTACGTCGACCTGGCGCTGACACTGCTGCGCCACGCCGCC
ATGTTGAACCCAGCCATCGACGTGCGCTTCCTCATCTTCAGCACCACCGT
GCAGTGGCAGCGTGCGGCAGCAGGGGGCGGCGGCAAGCGCATGAACACGA
TCCGAGAGCTGGAGCTGAAGCAGAACCGTGAGAGAGCGCTCTCCAACCAC
ACCAGAGCGCTGGCGCTCGTCCGTGCATTCTGGGCTTCAATGGCACGACA
GTACCTGAAGCTGCCGGAGGAAGACGCGACGAAACAGCTACGAGACATCA
ACTCTGCGGTCCAGTCGGCACGGCGAGGGTACGTGCAGCTGCTGGCAAAC
ATGCCTGAGCCCACTCCCGACATTGTGCGCATGTACGCCGCCTTCGTGCG
AGACCTGGAGAACGACCCCAAGAAGGCTGTACTCTTGTTCAGACACGCCG
ACTCGTTGGAGTCCATG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig84356:132..698+

>mRNA_M-pyrifera_M_contig84356.19673.1 ID=mRNA_M-pyrifera_M_contig84356.19673.1|Name=mRNA_M-pyrifera_M_contig84356.19673.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1134bp|location=Sequence derived from alignment at M-pyrifera_M_contig84356:132..698+ (Macrocystis pyrifera P11B4 male)
AGGTTGAGTGTGAAGGGAGCTCACCTGGTGTTCCGGGCGGCCATGGTGCA
GTTCCCTGACTCCGCCCTGGTCACCGCCATGTACGCAGTGTTTGTGTACC
ACAACACTCCGTACGTCGACCTGGCGCTGACACTGCTGCGCCACGCCGCC
ATGTTGAACCCAGCCATCGACGTGCGCTTCCTCATCTTCAGCACCACCGT
GCAGTGGCAGCGTGCGGCAGCAGGGGGCGGCGGCAAGCGCATGAACACGA
TCCGAGAGCTGGAGCTGAAGCAGAACCGTGAGAGAGCGCTCTCCAACCAC
ACCAGAGCGCTGGCGCTCGTCCGTGCATTCTGGGCTTCAATGGCACGACA
GTACCTGAAGCTGCCGGAGGAAGACGCGACGAAACAGCTACGAGACATCA
ACTCTGCGGTCCAGTCGGCACGGCGAGGGTACGTGCAGCTGCTGGCAAAC
ATGCCTGAGCCCACTCCCGACATTGTGCGCATGTACGCCGCCTTCGTGCG
AGACCTGGAGAACGACCCCAAGAAGGCTGTACTCTTGTTCAGACACGCCG
ACTCGTTGGAGTCCATGAGGTTGAGTGTGAAGGGAGCTCACCTGGTGTTC
CGGGCGGCCATGGTGCAGTTCCCTGACTCCGCCCTGGTCACCGCCATGTA
CGCAGTGTTTGTGTACCACAACACTCCGTACGTCGACCTGGCGCTGACAC
TGCTGCGCCACGCCGCCATGTTGAACCCAGCCATCGACGTGCGCTTCCTC
ATCTTCAGCACCACCGTGCAGTGGCAGCGTGCGGCAGCAGGGGGCGGCGG
CAAGCGCATGAACACGATCCGAGAGCTGGAGCTGAAGCAGAACCGTGAGA
GAGCGCTCTCCAACCACACCAGAGCGCTGGCGCTCGTCCGTGCATTCTGG
GCTTCAATGGCACGACAGTACCTGAAGCTGCCGGAGGAAGACGCGACGAA
ACAGCTACGAGACATCAACTCTGCGGTCCAGTCGGCACGGCGAGGGTACG
TGCAGCTGCTGGCAAACATGCCTGAGCCCACTCCCGACATTGTGCGCATG
TACGCCGCCTTCGTGCGAGACCTGGAGAACGACCCCAAGAAGGCTGTACT
CTTGTTCAGACACGCCGACTCGTTGGAGTCCATG
back to top