mRNA_M-pyrifera_M_contig84350.19671.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig84350.19671.1
Unique NamemRNA_M-pyrifera_M_contig84350.19671.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig84350.19671.1 vs. uniprot
Match: A0A7S4IQA3_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4IQA3_9EUKA)

HSP 1 Score: 106 bits (264), Expect = 5.300e-26
Identity = 61/149 (40.94%), Postives = 86/149 (57.72%), Query Frame = 1
Query:   31 EEDPLYDEQEDDETSEWAHGSLYSTGKHE-TDAVLTCPSCFTMVCSDCQRHAVYSSQYRAMFVHSCRVVMDEDAAELVLEDKEAARRGKEALSSSQQAFNNTEEKMRQLSLESPYHALRPVDCLECSCRLAVYDTVEEMYHFFNVNAGY 474
            EEDP YD Q D++  +WAH ++    +   TDAVL CPSCFT++C DCQRH ++S QYRAMFV +C+V      A++  + K+ A+R ++        +   E  +   S  +P     PV C  C   +AVYD   E+YHFFN  +GY
Sbjct:   41 EEDPYYDHQRDEKDEKWAHKNISGAQERSGTDAVLNCPSCFTLLCVDCQRHEIFSDQYRAMFVTNCKVNC---YAQVTFKAKKKAKRNQKT------KWERVE--VDDSSAHAPDELYFPVTCAYCETEVAVYDC-NEIYHFFNTVSGY 177          
BLAST of mRNA_M-pyrifera_M_contig84350.19671.1 vs. uniprot
Match: A0A1S8VZ79_9FUNG (Uncharacterized protein n=1 Tax=Batrachochytrium salamandrivorans TaxID=1357716 RepID=A0A1S8VZ79_9FUNG)

HSP 1 Score: 97.4 bits (241), Expect = 9.850e-23
Identity = 64/151 (42.38%), Postives = 83/151 (54.97%), Query Frame = 1
Query:   43 LYDEQEDDETSEWAHGSLYSTGKHETDAVLTCPSCFTMVCSDCQRHAVYSSQYRAMFVHSCRVVMDE-------DAAELVLEDKEAARRGK--EALSSSQQAFNNTEEKMRQLSLESPYHALRPVDCLECSCRLAVYDTVEEMYHFFNVNA 468
            L D++ DD    WA     S   H TD+VL CP CFT VC DCQRH VY+SQ+RAMFV +C VV +E            +   K+++ + +  EAL  + Q     EEK +   ++ P     PV C  C C +AVYD  EE+YHFFNV A
Sbjct:   17 LIDDRADDMDEIWAQRKHQSMDPH-TDSVLLCPLCFTPVCYDCQRHDVYASQFRAMFVENCHVVQNEILRYGNGKYVPGIATSKDSSTKAQLDEALKPNMQ-----EEKDKVQPVDRPQDIYHPVRCDSCECEVAVYDH-EEVYHFFNVIA 160          
BLAST of mRNA_M-pyrifera_M_contig84350.19671.1 vs. uniprot
Match: UPI000D15E60F (E2F-associated phosphoprotein-like isoform X1 n=1 Tax=Physcomitrium patens TaxID=3218 RepID=UPI000D15E60F)

HSP 1 Score: 95.1 bits (235), Expect = 2.590e-21
Identity = 60/160 (37.50%), Postives = 85/160 (53.12%), Query Frame = 1
Query:    1 LQRPEPFRDPEEDPLYDEQEDDETSEWAHGSLYSTGKHETDAVLTCPSCFTMVCSDCQRHAVYSSQYRAMFVHSCRVVMDEDAAELVLEDKEAARRGKEALSSSQQAFNNTEEKMRQLSLESPYHA------LRPVDCLECSCRLAVYDTVEEMYHFFNV 462
            L  P P  DPE  P YD  +D+   EWA   L      ++DAVL+CP+CFT++C DCQRH  Y +QYRAMFV +C +V  E      L   +  +R ++A   SQ +          +    P         L+PV C EC  ++AV D+ +E+YHFF++
Sbjct:   56 LDLPAPASDPEIAPFYDPVDDEHNEEWA---LMQRQGRKSDAVLSCPACFTILCIDCQRHEFYVNQYRAMFVRNCTIVETES-----LRYSDTRKRKRKAGRKSQLSVEECRVGRPGMVRVEPKDVGVDEDVLKPVKCAECGAQVAVLDS-DELYHFFDI 206          
BLAST of mRNA_M-pyrifera_M_contig84350.19671.1 vs. uniprot
Match: A0A2K1JN68_PHYPA (Uncharacterized protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JN68_PHYPA)

HSP 1 Score: 94.4 bits (233), Expect = 3.820e-21
Identity = 59/157 (37.58%), Postives = 84/157 (53.50%), Query Frame = 1
Query:   10 PEPFRDPEEDPLYDEQEDDETSEWAHGSLYSTGKHETDAVLTCPSCFTMVCSDCQRHAVYSSQYRAMFVHSCRVVMDEDAAELVLEDKEAARRGKEALSSSQQAFNNTEEKMRQLSLESPYHA------LRPVDCLECSCRLAVYDTVEEMYHFFNV 462
            P P  DPE  P YD  +D+   EWA   L      ++DAVL+CP+CFT++C DCQRH  Y +QYRAMFV +C +V  E      L   +  +R ++A   SQ +          +    P         L+PV C EC  ++AV D+ +E+YHFF++
Sbjct:   46 PAPASDPEIAPFYDPVDDEHNEEWA---LMQRQGRKSDAVLSCPACFTILCIDCQRHEFYVNQYRAMFVRNCTIVETES-----LRYSDTRKRKRKAGRKSQLSVEECRVGRPGMVRVEPKDVGVDEDVLKPVKCAECGAQVAVLDS-DELYHFFDI 193          
BLAST of mRNA_M-pyrifera_M_contig84350.19671.1 vs. uniprot
Match: UPI0006450953 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI0006450953)

HSP 1 Score: 92.4 bits (228), Expect = 1.640e-20
Identity = 57/143 (39.86%), Postives = 84/143 (58.74%), Query Frame = 1
Query:   34 EDPLYDEQEDDETSEWAHGSLYSTGKHETDAVLTCPSCFTMVCSDCQRHAVYSSQYRAMFVHSCRVVMDEDAAELVLEDKEAARRGKEALSSSQQAFNNTEEKMRQLSLESPYHALRPVDCLECSCRLAVYDTVEEMYHFFNV 462
            +D LYDE EDD+  +W    L     + ++A L+CP CFT++C+DCQRH  Y +QYRAMFV +C+V   +  + LV   KE  +   +A ++     +  EE+     +E  Y+   PV C  C  ++AVYD  +E+YHFFNV
Sbjct:   54 DDLLYDELEDDKNQQWVDTHL-----NRSNAYLSCPCCFTLLCADCQRHDRYKNQYRAMFVKNCKV---DFTSRLV--HKEEVKSHHDAKNNRSSDIHEQEEEEEVDVIEEHYN---PVRCAVCDTQVAVYDK-DEVYHFFNV 182          
BLAST of mRNA_M-pyrifera_M_contig84350.19671.1 vs. uniprot
Match: F4PVH8_CAVFA (Uncharacterized protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PVH8_CAVFA)

HSP 1 Score: 92.8 bits (229), Expect = 1.960e-20
Identity = 57/149 (38.26%), Postives = 89/149 (59.73%), Query Frame = 1
Query:   43 LYDEQEDDETSEWAHGSLYSTGKHETDAVLTCPSCFTMVCSDCQRHAVYSSQYRAMFVHSCRVVMDEDAAELVLEDKEAARR---------GKEALSSSQQAFNNTEEKMRQLSLESPYHALRPVDCLECSCRLAVYDTVEEMYHFFNV 462
            LYD++EDD   +W   +L ST K  TDA L+CP+CFT++C DCQRH +Y +QYRAMFV +C +  D  +  +  E+K+   +          KE  S +    ++ +++     +E  Y++   V+C  C+ ++AVYD  +E+YHFFNV
Sbjct:   69 LYDDKEDDLNQQWVDKNLKSTNK--TDAYLSCPACFTLLCVDCQRHDLYKNQYRAMFVKNCTI--DYQSKLVYKEEKKKHPKKSXXXXXXXXKEPTSIATTDDHDNDDQQ----IEEDYYS---VECSNCTTKVAVYDK-DEIYHFFNV 205          
BLAST of mRNA_M-pyrifera_M_contig84350.19671.1 vs. uniprot
Match: A9RZK0_PHYPA (Predicted protein (Fragment) n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9RZK0_PHYPA)

HSP 1 Score: 90.1 bits (222), Expect = 2.700e-20
Identity = 53/140 (37.86%), Postives = 79/140 (56.43%), Query Frame = 1
Query:   43 LYDEQEDDETSEWAHGSLYSTGKHETDAVLTCPSCFTMVCSDCQRHAVYSSQYRAMFVHSCRVVMDEDAAELVLEDKEAARRGKEALSSSQQAFNNTEEKMRQLSLESPYHALRPVDCLECSCRLAVYDTVEEMYHFFNV 462
             YD  +D+   EWA   L      ++DAVL+CP+CFT++C DCQRH  Y +QYRAMFV +C +V  E      L   +  +R ++A   SQ +    +E +           L+PV C EC  ++AV D+ +E+YHFF++
Sbjct:    1 FYDPVDDEHNEEWA---LMQRQGRKSDAVLSCPACFTILCIDCQRHEFYVNQYRAMFVRNCTIVETES-----LRYSDTRKRKRKAGRKSQLSDVGVDEDV-----------LKPVKCAECGAQVAVLDS-DELYHFFDI 120          
BLAST of mRNA_M-pyrifera_M_contig84350.19671.1 vs. uniprot
Match: D8S8T2_SELML (Uncharacterized protein (Fragment) n=3 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8S8T2_SELML)

HSP 1 Score: 86.7 bits (213), Expect = 6.920e-19
Identity = 57/148 (38.51%), Postives = 78/148 (52.70%), Query Frame = 1
Query:   43 LYDEQEDDETSEWAHGSLYSTGKHETDAVLTCPSCFTMVCSDCQRHAVYSSQYRAMFVHSCRVVMDEDAAELVLEDKEAARRGK-EALSSSQQAFNNTEEKMRQLSLESPYHA---LRPVDCLECSCRLAVYDTVEEMYHFFNVNAGY 474
            LYD   DD   +WA          ++DA+L+CP+CFT +C DCQRH +Y +QYRAMFV +CRV  DE   E   + +++ R+ K E LS                S+ +P  A   LR V C  CS  +   D+ +E+YHFFN    Y
Sbjct:    2 LYDPLIDDHDEKWATAQRQG---RKSDAILSCPACFTTLCLDCQRHEIYVTQYRAMFVRNCRVCEDEFVEESRGDRRKSQRKRKREPLS----------------SIATPAAAAPTLRRVRCAVCSVEVGAIDS-DEVYHFFNALPSY 129          
BLAST of mRNA_M-pyrifera_M_contig84350.19671.1 vs. uniprot
Match: A0A199VCB7_ANACO (E2F-associated phosphoprotein n=2 Tax=Ananas comosus TaxID=4615 RepID=A0A199VCB7_ANACO)

HSP 1 Score: 87.4 bits (215), Expect = 7.090e-19
Identity = 56/140 (40.00%), Postives = 74/140 (52.86%), Query Frame = 1
Query:   43 LYDEQEDDETSEWAHGSLYSTGKHETDAVLTCPSCFTMVCSDCQRHAVYSSQYRAMFVHSCRVVMDEDAAELVLEDKEAARRGKEALSSSQQAFNNTEEKMRQLSLESPYHALRPVDCLECSCRLAVYDTVEEMYHFFNV 462
             YD   DD   +WAH          +DA+L+CP+CFT +C DCQRH  Y +QYRAMFV +C+V  D+     +L  + A R+GK++             K R  S +      RPV C  CS  + V D  EE+YHFFNV
Sbjct:   38 FYDPNIDDIDEKWAHKQRKG---RSSDAILSCPACFTTLCLDCQRHEKYVTQYRAMFVRNCKVRTDQ-----IL--RPAKRKGKKS-------------KARSDSGKPEEEVFRPVCCSVCSTEVGVLDE-EEVYHFFNV 153          
BLAST of mRNA_M-pyrifera_M_contig84350.19671.1 vs. uniprot
Match: UPI000C875162 (E2F-associated phosphoprotein n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI000C875162)

HSP 1 Score: 87.4 bits (215), Expect = 8.620e-19
Identity = 50/121 (41.32%), Postives = 70/121 (57.85%), Query Frame = 1
Query:  112 HETDAVLTCPSCFTMVCSDCQRHAVYSSQYRAMFVHSCRVVMDEDAAELVLEDKEAARRGKEALSSSQQAFNNTEEKMRQLSLESPYHALRPVDCLECSCRLAVYDTVEEMYHFFNVNAGY 474
            H +DAVL+CP+CFT +C DCQRH  Y +QYRAMFV +C++ MD+    ++ ++K   ++ K    S  +   NTE        +  YH   PV C  CS  + V+D   E+YHFFNV   Y
Sbjct:   60 HGSDAVLSCPACFTTLCLDCQRHEKYLTQYRAMFVMNCKIKMDK----MLPQEKRKPKKLKSDTKSGSKPRGNTE-------TDEIYH---PVCCSVCSTEVGVFDE-NEIYHFFNVLPSY 165          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig84350.19671.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4IQA3_9EUKA5.300e-2640.94Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A1S8VZ79_9FUNG9.850e-2342.38Uncharacterized protein n=1 Tax=Batrachochytrium s... [more]
UPI000D15E60F2.590e-2137.50E2F-associated phosphoprotein-like isoform X1 n=1 ... [more]
A0A2K1JN68_PHYPA3.820e-2137.58Uncharacterized protein n=1 Tax=Physcomitrium pate... [more]
UPI00064509531.640e-2039.86hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
F4PVH8_CAVFA1.960e-2038.26Uncharacterized protein n=1 Tax=Cavenderia fascicu... [more]
A9RZK0_PHYPA2.700e-2037.86Predicted protein (Fragment) n=1 Tax=Physcomitrium... [more]
D8S8T2_SELML6.920e-1938.51Uncharacterized protein (Fragment) n=3 Tax=Selagin... [more]
A0A199VCB7_ANACO7.090e-1940.00E2F-associated phosphoprotein n=2 Tax=Ananas comos... [more]
UPI000C8751628.620e-1941.32E2F-associated phosphoprotein n=1 Tax=Dioscorea ca... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig84350contigM-pyrifera_M_contig84350:260..736 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score99.0
Seed ortholog evalue2.1e-18
Seed eggNOG ortholog3218.PP1S37_354V6.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.E2F-associated phosphoprotein
EggNOG OGs37UVS@33090,3GIMD@35493,KOG3395@1,KOG3395@2759
Ec32 ortholog descriptionE2F-associated phosphoprotein
Ec32 orthologEc-10_005350.1
COG Functional cat.O
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size477
Cds size477
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816750.9319425-CDS-M-pyrifera_M_contig84350:259..7361622816750.9319425-CDS-M-pyrifera_M_contig84350:259..736Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84350 260..736 -
1692278156.6216152-CDS-M-pyrifera_M_contig84350:259..7361692278156.6216152-CDS-M-pyrifera_M_contig84350:259..736Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84350 260..736 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig84350.19671.1prot_M-pyrifera_M_contig84350.19671.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig84350 260..736 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig84350.19671.1

>prot_M-pyrifera_M_contig84350.19671.1 ID=prot_M-pyrifera_M_contig84350.19671.1|Name=mRNA_M-pyrifera_M_contig84350.19671.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=159bp
LQRPEPFRDPEEDPLYDEQEDDETSEWAHGSLYSTGKHETDAVLTCPSCF
TMVCSDCQRHAVYSSQYRAMFVHSCRVVMDEDAAELVLEDKEAARRGKEA
LSSSQQAFNNTEEKMRQLSLESPYHALRPVDCLECSCRLAVYDTVEEMYH
FFNVNAGY*
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mRNA from alignment at M-pyrifera_M_contig84350:260..736-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig84350.19671.1 ID=mRNA_M-pyrifera_M_contig84350.19671.1|Name=mRNA_M-pyrifera_M_contig84350.19671.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=477bp|location=Sequence derived from alignment at M-pyrifera_M_contig84350:260..736- (Macrocystis pyrifera P11B4 male)
CTGCAGAGGCCGGAGCCGTTCAGGGATCCAGAGGAGGACCCCCTCTACGA CGAGCAGGAGGACGACGAGACGAGCGAGTGGGCGCACGGGAGCCTCTACT CGACGGGAAAGCATGAGACAGATGCGGTGCTGACATGTCCGAGCTGTTTC ACAATGGTGTGCTCCGACTGCCAGCGCCATGCAGTGTACTCCTCGCAGTA CCGTGCGATGTTCGTGCACAGCTGCAGGGTGGTCATGGACGAGGATGCGG CAGAGCTGGTGCTGGAGGACAAGGAGGCCGCCAGGAGGGGCAAGGAGGCG CTCTCCTCCAGTCAGCAGGCATTCAACAACACAGAGGAGAAGATGCGGCA GCTCAGCCTCGAGAGCCCTTACCACGCCTTGAGGCCCGTGGACTGCCTCG AGTGTAGCTGCAGATTGGCTGTCTATGATACTGTGGAGGAGATGTACCAC TTCTTCAACGTCAACGCCGGCTATTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig84350:260..736-

>mRNA_M-pyrifera_M_contig84350.19671.1 ID=mRNA_M-pyrifera_M_contig84350.19671.1|Name=mRNA_M-pyrifera_M_contig84350.19671.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=954bp|location=Sequence derived from alignment at M-pyrifera_M_contig84350:260..736- (Macrocystis pyrifera P11B4 male)
CTGCAGAGGCCGGAGCCGTTCAGGGATCCAGAGGAGGACCCCCTCTACGA
CGAGCAGGAGGACGACGAGACGAGCGAGTGGGCGCACGGGAGCCTCTACT
CGACGGGAAAGCATGAGACAGATGCGGTGCTGACATGTCCGAGCTGTTTC
ACAATGGTGTGCTCCGACTGCCAGCGCCATGCAGTGTACTCCTCGCAGTA
CCGTGCGATGTTCGTGCACAGCTGCAGGGTGGTCATGGACGAGGATGCGG
CAGAGCTGGTGCTGGAGGACAAGGAGGCCGCCAGGAGGGGCAAGGAGGCG
CTCTCCTCCAGTCAGCAGGCATTCAACAACACAGAGGAGAAGATGCGGCA
GCTCAGCCTCGAGAGCCCTTACCACGCCTTGAGGCCCGTGGACTGCCTCG
AGTGTAGCTGCAGATTGGCTGTCTATGATACTGTGGAGGAGATGTACCAC
TTCTTCAACGTCAACGCCGGCTATTGACTGCAGAGGCCGGAGCCGTTCAG
GGATCCAGAGGAGGACCCCCTCTACGACGAGCAGGAGGACGACGAGACGA
GCGAGTGGGCGCACGGGAGCCTCTACTCGACGGGAAAGCATGAGACAGAT
GCGGTGCTGACATGTCCGAGCTGTTTCACAATGGTGTGCTCCGACTGCCA
GCGCCATGCAGTGTACTCCTCGCAGTACCGTGCGATGTTCGTGCACAGCT
GCAGGGTGGTCATGGACGAGGATGCGGCAGAGCTGGTGCTGGAGGACAAG
GAGGCCGCCAGGAGGGGCAAGGAGGCGCTCTCCTCCAGTCAGCAGGCATT
CAACAACACAGAGGAGAAGATGCGGCAGCTCAGCCTCGAGAGCCCTTACC
ACGCCTTGAGGCCCGTGGACTGCCTCGAGTGTAGCTGCAGATTGGCTGTC
TATGATACTGTGGAGGAGATGTACCACTTCTTCAACGTCAACGCCGGCTA
TTGA
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