mRNA_M-pyrifera_M_contig84292.19667.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig84292.19667.1
Unique NamemRNA_M-pyrifera_M_contig84292.19667.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig84292.19667.1 vs. uniprot
Match: A0A517PI04_9PLAN (Putative cardiolipin synthase YwiE n=5 Tax=Gimesia TaxID=1649453 RepID=A0A517PI04_9PLAN)

HSP 1 Score: 393 bits (1009), Expect = 2.020e-133
Identity = 185/185 (100.00%), Postives = 185/185 (100.00%), Query Frame = 1
Query:    1 VIPSFPRLADENQKTDEQPASGFGANPFECEQLHTTLHCKYFIIDGTTTLLGSPNLDPRSLYINTELLLRIEDEALSQYYLEHHNRLRYNTNSWIVARRPDETLWTRLTGLISFKQPRDDAIGAHRPGYCFTPGEGTVKEIPDPLAADFYERYQACGVYPGINDSDEKVELFLTENLSYLFRDSL 555
            VIPSFPRLADENQKTDEQPASGFGANPFECEQLHTTLHCKYFIIDGTTTLLGSPNLDPRSLYINTELLLRIEDEALSQYYLEHHNRLRYNTNSWIVARRPDETLWTRLTGLISFKQPRDDAIGAHRPGYCFTPGEGTVKEIPDPLAADFYERYQACGVYPGINDSDEKVELFLTENLSYLFRDSL
Sbjct:  358 VIPSFPRLADENQKTDEQPASGFGANPFECEQLHTTLHCKYFIIDGTTTLLGSPNLDPRSLYINTELLLRIEDEALSQYYLEHHNRLRYNTNSWIVARRPDETLWTRLTGLISFKQPRDDAIGAHRPGYCFTPGEGTVKEIPDPLAADFYERYQACGVYPGINDSDEKVELFLTENLSYLFRDSL 542          
BLAST of mRNA_M-pyrifera_M_contig84292.19667.1 vs. uniprot
Match: A0A518I6Z8_9PLAN (Cardiolipin synthase n=1 Tax=Gimesia fumaroli TaxID=2527976 RepID=A0A518I6Z8_9PLAN)

HSP 1 Score: 290 bits (742), Expect = 4.110e-93
Identity = 131/185 (70.81%), Postives = 155/185 (83.78%), Query Frame = 1
Query:    1 VIPSFPRLADENQKTDEQPASGFGANPFECEQLHTTLHCKYFIIDGTTTLLGSPNLDPRSLYINTELLLRIEDEALSQYYLEHHNRLRYNTNSWIVARRPDETLWTRLTGLISFKQPRDDAIGAHRPGYCFTPGEGTVKEIPDPLAADFYERYQACGVYPGINDSDEKVELFLTENLSYLFRDSL 555
            +IPS+PRL++EN K+D QP SGFG+NPFE ++LHTTLHCKYF+IDGT TLLGSPNLDPRSL++NTELLLRIEDE+LSQYYLEHHNR R N NSW+VAR   ET+W RL+ L++ +Q R D    +RPG CF P + T +EIPDP AADFYERY+ CGVYPGI DSDEKVELF TENLS++FRD L
Sbjct:  361 MIPSYPRLSEENDKSDAQPESGFGSNPFESDELHTTLHCKYFVIDGTMTLLGSPNLDPRSLFVNTELLLRIEDESLSQYYLEHHNRFRSNANSWVVARLQKETVWIRLSRLLASQQTRQDTDWPYRPGCCFVPRKETAQEIPDPFAADFYERYEPCGVYPGIKDSDEKVELFFTENLSHMFRDLL 545          
BLAST of mRNA_M-pyrifera_M_contig84292.19667.1 vs. uniprot
Match: A0A349GYF4_9BACT (Uncharacterized protein n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A349GYF4_9BACT)

HSP 1 Score: 64.3 bits (155), Expect = 1.010e-8
Identity = 44/168 (26.19%), Postives = 74/168 (44.05%), Query Frame = 1
Query:    4 IPSFPRLADENQKTDEQPASGFGANPFECEQLHTTLHCKYFIIDGTTTLLGSPNLDPRSLYINTELLLRIEDEALSQYYLEHHNRLRYNTNSWIVARRP-----DETLWTRLTGLISFKQPRDDAIGAHRPGYCFTPGEGTVKEIPDPLAADFYERYQACGVYPGIND 492
            IP    L               G +PF C      +H K  +ID T + +GS N DPRS+ +NTE+ L ++D   +   +++        NSW++ARR      ++   T    L + +   D     +  GY      G+  ++P   +A FY+ Y+  G +PG+ +
Sbjct:  577 IPDLEALRRRGAAVRSSGGGDAGRDPFLC------IHAKSMVIDETVSYVGSYNFDPRSISLNTEVGLLVQDPGFAAAVMKNILADIQPGNSWVIARRERPRSAEDVQRTMPEDLETTRAAIDLWPFRNTAGYALK--AGSAPQVPG--SASFYQHYEDIGPFPGVEE 734          
BLAST of mRNA_M-pyrifera_M_contig84292.19667.1 vs. uniprot
Match: A0A2N0WX79_9GAMM (Phospholipase n=2 Tax=Psychromonas sp. psych-6C06 TaxID=2058089 RepID=A0A2N0WX79_9GAMM)

HSP 1 Score: 60.5 bits (145), Expect = 1.980e-7
Identity = 41/129 (31.78%), Postives = 70/129 (54.26%), Query Frame = 1
Query:   40 KTDEQPASGFGANPFECEQLHTTLHCKYFIIDGTTTLLGSPNLDPRSLYINTELLLRIEDEALSQYYLEHHNRLRYNTNSWIVARRPDETLWTRLTG--LISF-KQPRDDAIGAHRPGYC-FTPGEGTV 414
            KTD + +S +G +         +LH KYF+ID  +T +GS NLDPRSLY NTE+ + +E EALS+   E  +    N  ++ ++   +  +W+++     I++ K+P        + G+  + PGE  +
Sbjct:  421 KTDNKKSSIWGKSK-------ASLHAKYFVIDRKSTFIGSLNLDPRSLYENTEIGVILETEALSEDVAEQFDN-HINQIAFELSLVDNNIIWSKIESGETITYDKEPYSSWWERFKVGFISYLPGESQL 541          
BLAST of mRNA_M-pyrifera_M_contig84292.19667.1 vs. uniprot
Match: UPI001BAD488B (phospholipase D family protein n=1 Tax=Roseomonas terrae TaxID=424799 RepID=UPI001BAD488B)

HSP 1 Score: 59.7 bits (143), Expect = 3.480e-7
Identity = 36/92 (39.13%), Postives = 52/92 (56.52%), Query Frame = 1
Query:  106 TLHCKYFIIDGTTTLLGSPNLDPRSLYINTELLLRIEDEALSQYYLEHHNRLRYNTNSWIVARRPDETL-WTRLTG---LISFKQPRDDAIG 369
            +LH K F+IDG  + +GS NLDPRS+ +NTE+   IEDE +++     H RL     SW V    D  L WT   G   +  +++P D ++G
Sbjct:  362 SLHTKAFVIDGRLSFVGSFNLDPRSVALNTEMGTFIEDERIARMLQAEHERLTRPGCSWSVQSGADGRLSWTAEEGGRPVTVYREP-DASLG 452          
BLAST of mRNA_M-pyrifera_M_contig84292.19667.1 vs. uniprot
Match: A0A858SVE9_9RHOB (Phospholipase D n=2 Tax=Roseobacter ponti TaxID=1891787 RepID=A0A858SVE9_9RHOB)

HSP 1 Score: 58.5 bits (140), Expect = 8.870e-7
Identity = 30/66 (45.45%), Postives = 39/66 (59.09%), Query Frame = 1
Query:  109 LHCKYFIIDGTTTLLGSPNLDPRSLYINTELLLRIEDEALSQYYLEHHNRLRYNTNSWIVARRPDE 306
            LH KY IID     +GS NLDPRSL INTE+ L + D AL++   E  N     +N+W +   PD+
Sbjct:  403 LHAKYLIIDSDLVFIGSANLDPRSLRINTEIGLLVRDRALNRELRELTNPDFLRSNAWELDITPDQ 468          
BLAST of mRNA_M-pyrifera_M_contig84292.19667.1 vs. uniprot
Match: A0A353D708_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A353D708_9GAMM)

HSP 1 Score: 57.8 bits (138), Expect = 1.640e-6
Identity = 30/77 (38.96%), Postives = 38/77 (49.35%), Query Frame = 1
Query:  106 TLHCKYFIIDGTTTLLGSPNLDPRSLYINTELLLRIEDEALSQYYLEHHNRLRYNTNSWIVARRPDETLWTRLTGLI 336
            +LH KY I D     +GS NLDPRSLY+NTEL + +    L+         L    NSW V   P+   W    G+I
Sbjct:  411 SLHSKYIIFDDDVVFIGSMNLDPRSLYLNTELGVVLRSPKLADALRASFQILIQPENSWRVTNVPEGLRWESSAGVI 487          
BLAST of mRNA_M-pyrifera_M_contig84292.19667.1 vs. uniprot
Match: A0A0Q6XCU1_9BURK (Uncharacterized protein n=1 Tax=Rhizobacter sp. Root1221 TaxID=1736433 RepID=A0A0Q6XCU1_9BURK)

HSP 1 Score: 57.8 bits (138), Expect = 1.640e-6
Identity = 28/66 (42.42%), Postives = 44/66 (66.67%), Query Frame = 1
Query:   37 QKTDEQPASGFGANPFECEQLHTTLHCKYFIIDGTTTLLGSPNLDPRSLYINTELLLRIEDEALSQ 234
            ++ D  PA G G  PF+     T+LH K  ++DG T ++GS N DPRS+++NTE+ + I+ EAL++
Sbjct:  391 REPDAPPADGSG--PFKSR---TSLHAKTMVVDGHTVVIGSSNADPRSVWLNTEMAIVIQSEALAR 451          
BLAST of mRNA_M-pyrifera_M_contig84292.19667.1 vs. uniprot
Match: A0A0P6XIQ3_9SPHN (Phospholipase D n=1 Tax=Erythrobacter sp. SG61-1L TaxID=1603897 RepID=A0A0P6XIQ3_9SPHN)

HSP 1 Score: 57.4 bits (137), Expect = 2.030e-6
Identity = 33/82 (40.24%), Postives = 47/82 (57.32%), Query Frame = 1
Query:  109 LHCKYFIIDGTTTLLGSPNLDPRSLYINTELLLRIEDEALS----QYYLEHHNRLRYNTNSWIVARRPDETLWTRLTGLISF 342
            LH K F++D  T  +GS N D RSLY+N E++LRIED+AL+    Q+  +H   L Y+T           T WTR+   +S+
Sbjct:  299 LHAKIFVVDDVT-YIGSANFDMRSLYLNLEIMLRIEDKALAERMRQFITQH---LPYSTEVTPELHHRRRTWWTRIRWSLSW 376          
BLAST of mRNA_M-pyrifera_M_contig84292.19667.1 vs. uniprot
Match: UPI0010BF9048 (phospholipase D family protein n=1 Tax=Roseomonas sp. HF4 TaxID=2562313 RepID=UPI0010BF9048)

HSP 1 Score: 57.4 bits (137), Expect = 2.170e-6
Identity = 34/97 (35.05%), Postives = 51/97 (52.58%), Query Frame = 1
Query:   31 ENQKTDEQPASGFGANPFECEQLHTTLHCKYFIIDGTTTLLGSPNLDPRSLYINTELLLRIEDEALSQYYLEHHNRLRYNTNSWIVARR-PDETLWT 318
            E + T ++ AS FG+          +LH K  ++DG    +GS NLDPRS+ +NTE+   + ++ +++   E H RL     SW V R  P   LWT
Sbjct:  349 EMKPTRDEGASVFGSRG-------ASLHTKALVLDGERGFVGSFNLDPRSVALNTEMGTFVRNDEVARQLREEHARLASPLRSWRVTRAGPGRLLWT 438          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig84292.19667.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A517PI04_9PLAN2.020e-133100.00Putative cardiolipin synthase YwiE n=5 Tax=Gimesia... [more]
A0A518I6Z8_9PLAN4.110e-9370.81Cardiolipin synthase n=1 Tax=Gimesia fumaroli TaxI... [more]
A0A349GYF4_9BACT1.010e-826.19Uncharacterized protein n=1 Tax=Verrucomicrobia ba... [more]
A0A2N0WX79_9GAMM1.980e-731.78Phospholipase n=2 Tax=Psychromonas sp. psych-6C06 ... [more]
UPI001BAD488B3.480e-739.13phospholipase D family protein n=1 Tax=Roseomonas ... [more]
A0A858SVE9_9RHOB8.870e-745.45Phospholipase D n=2 Tax=Roseobacter ponti TaxID=18... [more]
A0A353D708_9GAMM1.640e-638.96Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
A0A0Q6XCU1_9BURK1.640e-642.42Uncharacterized protein n=1 Tax=Rhizobacter sp. Ro... [more]
A0A0P6XIQ3_9SPHN2.030e-640.24Phospholipase D n=1 Tax=Erythrobacter sp. SG61-1L ... [more]
UPI0010BF90482.170e-635.05phospholipase D family protein n=1 Tax=Roseomonas ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig84292contigM-pyrifera_M_contig84292:324..881 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score61.6
Seed ortholog evalue4.4e-07
Seed eggNOG ortholog452637.Oter_1926
Preferred nameCP_0318
KEGG rclassRC00017
KEGG koko:K06131,ko:K06132
KEGG ReactionR07390,R11062
KEGG Pathwayko00564,ko01100,map00564,map01100
Hectar predicted targeting categoryother localisation
EggNOG free text desc.PFAM phospholipase D Transphosphatidylase
EggNOG OGs3K9QJ@414999,46TDH@74201,COG1502@1,COG1502@2
COG Functional cat.I
Best tax levelOpitutae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size558
Cds size558
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816750.67009-CDS-M-pyrifera_M_contig84292:323..8811622816750.67009-CDS-M-pyrifera_M_contig84292:323..881Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84292 324..881 -
1692278156.3983865-CDS-M-pyrifera_M_contig84292:323..8811692278156.3983865-CDS-M-pyrifera_M_contig84292:323..881Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84292 324..881 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig84292.19667.1prot_M-pyrifera_M_contig84292.19667.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig84292 324..881 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig84292.19667.1

>prot_M-pyrifera_M_contig84292.19667.1 ID=prot_M-pyrifera_M_contig84292.19667.1|Name=mRNA_M-pyrifera_M_contig84292.19667.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=186bp
VIPSFPRLADENQKTDEQPASGFGANPFECEQLHTTLHCKYFIIDGTTTL
LGSPNLDPRSLYINTELLLRIEDEALSQYYLEHHNRLRYNTNSWIVARRP
DETLWTRLTGLISFKQPRDDAIGAHRPGYCFTPGEGTVKEIPDPLAADFY
ERYQACGVYPGINDSDEKVELFLTENLSYLFRDSL*
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mRNA from alignment at M-pyrifera_M_contig84292:324..881-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig84292.19667.1 ID=mRNA_M-pyrifera_M_contig84292.19667.1|Name=mRNA_M-pyrifera_M_contig84292.19667.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=558bp|location=Sequence derived from alignment at M-pyrifera_M_contig84292:324..881- (Macrocystis pyrifera P11B4 male)
GTCATTCCCAGCTTTCCAAGGCTTGCTGATGAGAATCAGAAAACGGACGA ACAGCCGGCTTCCGGCTTTGGGGCGAATCCCTTTGAGTGTGAGCAACTCC ACACGACCCTGCACTGCAAGTATTTCATCATTGATGGCACAACGACACTA CTAGGCTCACCCAATCTGGATCCCCGTTCGCTGTACATCAACACGGAACT GCTGCTGCGGATCGAAGATGAAGCACTCAGCCAGTATTACCTGGAGCACC ACAATCGGTTGCGGTATAACACGAACAGCTGGATCGTCGCCCGTCGACCA GACGAAACACTCTGGACCCGCTTAACGGGCCTGATTTCGTTCAAGCAGCC ACGCGATGACGCCATCGGAGCGCATCGACCCGGCTACTGCTTCACACCCG GGGAAGGCACCGTCAAAGAAATCCCCGATCCCCTGGCCGCCGATTTCTAC GAACGCTACCAGGCCTGCGGCGTCTATCCGGGAATCAACGATTCCGACGA AAAAGTCGAACTCTTCCTGACCGAGAATCTGTCCTATCTGTTTCGCGATT CGCTCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig84292:324..881-

>mRNA_M-pyrifera_M_contig84292.19667.1 ID=mRNA_M-pyrifera_M_contig84292.19667.1|Name=mRNA_M-pyrifera_M_contig84292.19667.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1116bp|location=Sequence derived from alignment at M-pyrifera_M_contig84292:324..881- (Macrocystis pyrifera P11B4 male)
GTCATTCCCAGCTTTCCAAGGCTTGCTGATGAGAATCAGAAAACGGACGA
ACAGCCGGCTTCCGGCTTTGGGGCGAATCCCTTTGAGTGTGAGCAACTCC
ACACGACCCTGCACTGCAAGTATTTCATCATTGATGGCACAACGACACTA
CTAGGCTCACCCAATCTGGATCCCCGTTCGCTGTACATCAACACGGAACT
GCTGCTGCGGATCGAAGATGAAGCACTCAGCCAGTATTACCTGGAGCACC
ACAATCGGTTGCGGTATAACACGAACAGCTGGATCGTCGCCCGTCGACCA
GACGAAACACTCTGGACCCGCTTAACGGGCCTGATTTCGTTCAAGCAGCC
ACGCGATGACGCCATCGGAGCGCATCGACCCGGCTACTGCTTCACACCCG
GGGAAGGCACCGTCAAAGAAATCCCCGATCCCCTGGCCGCCGATTTCTAC
GAACGCTACCAGGCCTGCGGCGTCTATCCGGGAATCAACGATTCCGACGA
AAAAGTCGAACTCTTCCTGACCGAGAATCTGTCCTATCTGTTTCGCGATT
CGCTCTGAGTCATTCCCAGCTTTCCAAGGCTTGCTGATGAGAATCAGAAA
ACGGACGAACAGCCGGCTTCCGGCTTTGGGGCGAATCCCTTTGAGTGTGA
GCAACTCCACACGACCCTGCACTGCAAGTATTTCATCATTGATGGCACAA
CGACACTACTAGGCTCACCCAATCTGGATCCCCGTTCGCTGTACATCAAC
ACGGAACTGCTGCTGCGGATCGAAGATGAAGCACTCAGCCAGTATTACCT
GGAGCACCACAATCGGTTGCGGTATAACACGAACAGCTGGATCGTCGCCC
GTCGACCAGACGAAACACTCTGGACCCGCTTAACGGGCCTGATTTCGTTC
AAGCAGCCACGCGATGACGCCATCGGAGCGCATCGACCCGGCTACTGCTT
CACACCCGGGGAAGGCACCGTCAAAGAAATCCCCGATCCCCTGGCCGCCG
ATTTCTACGAACGCTACCAGGCCTGCGGCGTCTATCCGGGAATCAACGAT
TCCGACGAAAAAGTCGAACTCTTCCTGACCGAGAATCTGTCCTATCTGTT
TCGCGATTCGCTCTGA
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