mRNA_M-pyrifera_M_contig84292.19666.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig84292.19666.1
Unique NamemRNA_M-pyrifera_M_contig84292.19666.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig84292.19666.1 vs. uniprot
Match: A0A517PHY8_9PLAN (Uncharacterized protein n=1 Tax=Gimesia chilikensis TaxID=2605989 RepID=A0A517PHY8_9PLAN)

HSP 1 Score: 108 bits (269), Expect = 1.780e-28
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 1 
Query:    1 LVRSADEDIQAASLIAVGQIKSPRVLALLEEVSRSPLTEEIRELVGNLIDDQRQADIS 174
            LVRSADEDIQAASLIAVGQIKSPRVLALLEEVSRSPLTEEIRELVGNLIDDQRQADIS
Sbjct:  114 LVRSADEDIQAASLIAVGQIKSPRVLALLEEVSRSPLTEEIRELVGNLIDDQRQADIS 171
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BLAST of mRNA_M-pyrifera_M_contig84292.19666.1 vs. uniprot
Match: A0A517W736_9PLAN (Uncharacterized protein n=1 Tax=Gimesia chilikensis TaxID=2605989 RepID=A0A517W736_9PLAN)

HSP 1 Score: 85.9 bits (211), Expect = 1.020e-19
Identity = 46/54 (85.19%), Postives = 49/54 (90.74%), Query Frame = 1 
Query:    1 LVRSADEDIQAASLIAVGQIKSPRVLALLEEVSRSPLTEEIRELVGNLIDDQRQ 162
            LVRSADEDIQAASLIA+GQI SPRVL LLE +S S LTEEIRELVGNL+DDQRQ
Sbjct:  114 LVRSADEDIQAASLIALGQIISPRVLTLLEALSLSTLTEEIRELVGNLLDDQRQ 167
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BLAST of mRNA_M-pyrifera_M_contig84292.19666.1 vs. uniprot
Match: A6C0Z9_9PLAN (Uncharacterized protein n=2 Tax=Gimesia maris TaxID=122 RepID=A6C0Z9_9PLAN)

HSP 1 Score: 68.6 bits (166), Expect = 3.380e-13
Identity = 40/57 (70.18%), Postives = 44/57 (77.19%), Query Frame = 1 
Query:    1 LVRSADEDIQAASLIAVGQIKSPRVLALLEEVSRSPLTEEIRELVGNLIDDQRQADI 171
            LVRSA+ED+ AASLIAV QIKSPRV ALLE +S  PLT+EIR  V N ID QRQ  I
Sbjct:   89 LVRSANEDLLAASLIAVRQIKSPRVPALLEALSCFPLTDEIRASVANHIDKQRQDQI 145
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig84292.19666.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A517PHY8_9PLAN1.780e-28100.00Uncharacterized protein n=1 Tax=Gimesia chilikensi... [more]
A0A517W736_9PLAN1.020e-1985.19Uncharacterized protein n=1 Tax=Gimesia chilikensi... [more]
A6C0Z9_9PLAN3.380e-1370.18Uncharacterized protein n=2 Tax=Gimesia maris TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig84292contigM-pyrifera_M_contig84292:2..178 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score69.7
Seed ortholog evalue5.2e-10
Seed eggNOG ortholog344747.PM8797T_05455
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG OGs2EVEC@1,33NUS@2
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size177
Cds size177
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816750.6328838-CDS-M-pyrifera_M_contig84292:1..1781622816750.6328838-CDS-M-pyrifera_M_contig84292:1..178Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84292 2..178 +
1692278156.379123-CDS-M-pyrifera_M_contig84292:1..1781692278156.379123-CDS-M-pyrifera_M_contig84292:1..178Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig84292 2..178 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig84292.19666.1prot_M-pyrifera_M_contig84292.19666.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig84292 2..178 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig84292.19666.1

>prot_M-pyrifera_M_contig84292.19666.1 ID=prot_M-pyrifera_M_contig84292.19666.1|Name=mRNA_M-pyrifera_M_contig84292.19666.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=59bp
LVRSADEDIQAASLIAVGQIKSPRVLALLEEVSRSPLTEEIRELVGNLID
DQRQADIS*
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mRNA from alignment at M-pyrifera_M_contig84292:2..178+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig84292.19666.1 ID=mRNA_M-pyrifera_M_contig84292.19666.1|Name=mRNA_M-pyrifera_M_contig84292.19666.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=177bp|location=Sequence derived from alignment at M-pyrifera_M_contig84292:2..178+ (Macrocystis pyrifera P11B4 male)
CTGGTGCGTTCTGCAGATGAAGATATCCAGGCGGCCAGCCTGATCGCTGT
AGGACAGATCAAATCACCGCGTGTGCTTGCGCTGCTGGAGGAGGTGTCCC
GTTCGCCACTGACGGAAGAGATTCGGGAATTAGTCGGAAATCTCATCGAC
GATCAGCGACAGGCTGATATTTCCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig84292:2..178+

>mRNA_M-pyrifera_M_contig84292.19666.1 ID=mRNA_M-pyrifera_M_contig84292.19666.1|Name=mRNA_M-pyrifera_M_contig84292.19666.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=354bp|location=Sequence derived from alignment at M-pyrifera_M_contig84292:2..178+ (Macrocystis pyrifera P11B4 male)
CTGGTGCGTTCTGCAGATGAAGATATCCAGGCGGCCAGCCTGATCGCTGT
AGGACAGATCAAATCACCGCGTGTGCTTGCGCTGCTGGAGGAGGTGTCCC
GTTCGCCACTGACGGAAGAGATTCGGGAATTAGTCGGAAATCTCATCGAC
GATCAGCGACAGGCTGATATTTCCTGACTGGTGCGTTCTGCAGATGAAGA
TATCCAGGCGGCCAGCCTGATCGCTGTAGGACAGATCAAATCACCGCGTG
TGCTTGCGCTGCTGGAGGAGGTGTCCCGTTCGCCACTGACGGAAGAGATT
CGGGAATTAGTCGGAAATCTCATCGACGATCAGCGACAGGCTGATATTTC
CTGA
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